Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->KAN4(2)                                                                         <---------ANAC46                                                                      <---------TOE1(1)            --                                                                      <---------TOE2(1)       -------                       --------->GLK1(1)                             --------->SPL7           -------                       --------->CCA1(2)                           --------->TOE1(2)  ---------->CDC5                       <---------GLK1(1)                           <---------SPL7    ================                      <---------ARR11(3)   <---------At4g35610     --------->ZAT18   ================          --------->ANAC58                 --------->ZAT2         <---------ANAC58   ------>ZmHOX2a(1)          --------->ANAC58                 <---------ZAT2         <---------ANAC58   ================   <---------ARR11(3) --------->ARR11(3)   --------->At4g35610   --------------->AtSPL3     --------- --ZmHOX2a(1) --------->GLK1(1) ------>ZmHOX2a(1)                <---------------AtSPL8  <---------ANAC46   aacaatatcaacaaggaaatcgaagatatcagtcctagtaatcgcagcagcgatatcgtttttctgaagcgtacgacgtttattctcctcagcgtgaagc  18020600             <---------At4g35610        ------>ZmHOX2a(2)    ----------->HVH21   ------>ZmHOX2a(2)  --------->CCA1(2)  <------ZmHOX2a(2)                                                     --------->TOE2(2) <-----------ARR10                                                      --------->TOE1(2) --------->ARR14(3)                                                   <------ZmHOX2a(2) <---------AGP1                                                  --------->LBD16 --------->ARR14(2)                                             <---------ANAC46 <---------ARR14(2)                                            <---------LBD16 <---------ARR14(3)                                         <---------At4g35610 <---------ARR11(3)                                        <----------DOF2 --------->ARR11(3)                                       <---------ANAC58      --------->ARR11(3) --------->AGP1  <---------HSFB2a(2)      --------->HSFB2a(2)  --------->At4g35610 --------->ARR10 --------->HSFB2a(2)      <---------HSFB2a(2)  <---------At4g35610 -->ANAC58   --------->At4g35610      <----------DOF2     <---------ANAC58      <---------ARR11(3) -->ANAC58   --------->ZAT2        --------->ANAC58--------->GLK1(2)--------->GLK1(1)              <- ========HOX2a_HOX2a               --------->ANAC58--------->ARR14(2)<---------ARR11(3)            -- =========HOX2a_HOX2a    ---------->DOF2 <---------ANAC46--------->ABI4(2)    ------->TEIL     ------ ==============HOX2a_HOX2a    --------->ZAT18      <---------ARR14(2)--------->ARR11(3)     <-------- >REM1(2)    <---------ZAT2 --------->At4g35610   <---------GLK1(2) <---------GLK1(1)  <---------At4g35610   caagatctgatcgtgagctcgagaatgaaaagctcacaagctttcgcgaagagaatcggtgcttctgcggagatcatacgaacatcttcatcggctttca  18020700                                                                             --------->HSFB2a(2)                                                                             <---------HSFB2a(2)                                                                         <------MYB46(1)                                                                         <------MYB83                                                                        --------->MYB46(2)                                                                        --------->MYB59                                                                        --------->MYB111(1)                                                                       <--------P                                                                     <---------MYB46(3)              --------->STY1(2)                                      <------MYB83              <---------STY1(2)                                      --------->MYB55(2)  <----------DOF2                                                    <------MYB46(1) ==================HOX2a_HOX2a                <---------DOF5.7(2)   <---------AtMYB61 ------>ZmHOX2a(2)      <---------ZAT2      --------->DOF5.7(2)   <-------GAMYB                <----- --------ARR11(3)       <---------At4g35610 <---------MYB52(1)   <---------ANAC58           <-------- ------->ARR11(3)  <---------ZAT6          --------->TOE2(3)     <---------ANAC58           <-------- --->YAB1   ------>ZmHOX2a(1)             ----------->GT1 ------>ZmHOX2a(2) <-------TEIL  --------->At4g35610 --DOF2  <---------YAB1 --------->At4g35610--------->TOE1(3)     <---------ANAC46         <---------At4g35610   tgatcttttttatcctagctagtggaagctgatggtttttgaaatcgttaacttgttcgatctcttggcgttggtaggtccagaatagttggagctgttg  18020800                                                                                             <-------                                                                                             <-------                                                                                       <---------SPL7                                                                                      <---------ANAC46                                                                                      --------->ALFIN1                                                                                      <---------DEAR3(1)                                                                                     --------->At4g35610                                                                                     <---------At4g35610                                                                                     --------->ATERF1(1)                                                                                     <------NtERF2                                                                                     <---------ABI4(1)                                                                                     <---------LBD16                                                                                    ------>NtERF2                                                                                    <---------ATERF1(1)                                                                                    <---------RAP2.3(1)                                                                                    <---------ORA47(2)                                                                                    <---------ERF1<--                                                                                    <---------DEAR4(2)                                             --------->LBD16                        <---------RAP2.6(1)                                            <---------DEAR3(1)                      <---------RRTF1(1)                                            <---------ANAC46                       <---------RRTF1(3)                                           <---------LBD16                         <---------RAP2.3(3)                                           ------>NtERF2                           <---------RAP2.3(2)                                           <------NtERF2                           --------->ATERF1(2)                                           <---------At4g35610                     <---------ATERF1(2)                                           --------->ATERF1(1)                     <---------DEAR3(1)                                          <---------RRTF1(1)                       --------->DEAR3(1)                                          ------>NtERF2                          --------->LBD16 ----                                          <---------RAP2.3(1)                    ------>NtERF2   ----                                         <---------RAP2.3(2)    <---------MYB46(3) <---------RRTF1(2)                                         <---------DEAR3(1)    <---------AtMYB61 <---------ATERF1(1)                                        <---------LBD16        --------->ALFIN1 <---------RAP2.3(2)                                       ================================RAV   <---------ARR14(2)  <---                                       ------>ZmHOX2a(1)       <---------DEAR3(1)<---------RAP2.3(1)<                                     ----------->RAV1(2)     <---------ZAT2  --------->ARR14(2) <----                    <---------MYB46(3) <-----------RAV1(1) --------->HSFB2a(2)  <---------LBD16 -----                 <---------MYB46(3) ------>ZmHOX2a(1)      <-----------RAV1(2)  <---------RAP2.6(2) -                --------->ALFIN1<---------ALFIN1        <---------ARR14(2)   --------->GLK1(2)<------MYB83         <---------HSFB2a(2)<---------HSFB2a(1)       <---------MYB46(3)    --------->GLK1(1)--------    <-----------RAV1(1)     <---------HSFC1(2)    <---------AtMYB61    <------ZmHOX2a(1)<------NtERF2    <---------MYB46(3)      --------->HSFC1(2)<------NtERF2<---------HSFB2a(2) <---------LBD16<------MYB46(1) ----MYB46(3)   <---------AtMYB61------>ZmHOX2a(1)--------->ALFIN1--------->ALFIN1<---------ABI4(1)<- ---RAV1(1)     <---------DEAR3(1) <---------ALFIN1   --------->MYB55(2)    <---------GLK1(1)-------- -MYB46(3)   --------->DAG2 --------->HSFB2a(1)<---------ARR14(2) <---------ANAC46--------->ATERF1(1)   ttgttgttgttggagaaggtggtggtaagaagctcctcctcctgcggcggagatggtggttccaggtggtggaggagggattccggcggcggagggaggt  18020900        <-------GAMYB       --------->MYB111(2)       --------->MYB55(2)       <---------MYB46(3)       --------->MYB111(1)      <--------P     <-------GAMYB    <---------MYB46(3)  <---------ANAC58  <---------ANAC58  <---------ANAC46 <---------At4g35610 --DEAR3(1) --AtMYB61 -----GAMYB<------MYB83 ----->MYB55(2)          <------MYB46(1) ----->MYB111(2)         <---------DEAR3(2) ------MYB46(3)         <---------DEAR3(1)                  ----------->HVH21 ---------MYB46(3)     <---------ORA47(1)                 <---------ANAC58 -----AtMYB61        <---------MYB46(3)                   ----------->GT1 ---->ALFIN1        <---------AtMYB61                     <---------ANAC58 -------->MYB111(2)<---------MYB52(1)                 --------->DAG2                     <-------TEIL ->MYB111(2)     --------->ATHB12                    --------->DAG2              <------------CBF -------P  <------MYB46(1)                      <------ZmHOX2a(2)           --------->MYB52(1)      - ->ALFIN1<---------ANAC46<------MYB83<---------YAB1 ---------->DOF2*TSS    ---------->DOF2          <   ggttgctggttgttggtatccattggtcggttttggattttgatttttggatcaaaaaggtcgtgacaagtttttgccaaagggattggggtacaagtgg  18021000                                                               <-----------GT1                                                            <---------AHL20(2)                                                           --------->AHL20(2)                                                           <---------AHL20(2)                                                           <---------AHL20(1)                                                        <---------AHL20(2)                                                       <---------AHL20(2)                 <---------At4g35610                   --------->AHL20(1)             <---------REM1(1)                         --------->AHL20(2)    --------->ETT(2)              <----------DOF2     --------->AHL20(2)    --------->ZAT18        <-----------GT1            <---------AHL20(2)        ----------->GT1   --------->ALFIN1   <---------YAB1              ------>ZmHOX2a(1)      --------------->AGL15 -------->DAG2  ------->TEIL <-----------GT1     --------->TOE2(3)    <-----------GT1       --------- ---------TOE2(3)--------->At4g35610    <-----------GT1<---------AHL20(1)<---------------AGL15   ataaggtggacagcgatgtagctgatgattttctctcttttttttctatttcctaaattaatttttttctattttctatttcaagttaaattttgttttt  18021100           ---------->DOF2     --------->ANAC55(1)                                              >>>>>>>GRF7     --------->ANAC46                                              <-----------HVH21     <---------ANAC55(2)                                        --------->ZAT2     --------->ANAC55(2)                                        <---------ZAT2     --------->ANAC58                                           --------->At4g35610         ---------     --------->ANAC58      --------->ANAC46                     <---------At4g35610     XXXXXXXXXXXXX <-----------GT1<-------TEIL       ------->TEIL          --------->ZAT14     <-----------RAV1(1) ->ID1  ------->TEIL    ------->TEIL   ---------->DOF2   <---------ZAT14<------ZmHOX2a(1)   <--------   tttttacacgtaccaaagttcatatgcatccgaaatgaaccaaaagaaaacatcaagagtgaagagagctgtcaggaaaatgttgcatcaagagtgaaga  18021200                                                                            <---------ALFIN1                                                                           --------->ZAT14                                                                           <---------ZAT18                                                                           <---------ZAT14                                                                       <-----------GT1                                                                 ------>NtERF2                                                                 --------->LBD16                                                                --------->ANAC58                                                  --------->YAB1--------->ANAC46                                                 <---------YAB1 --------->ANAC58   <----------DOF2                          <---------TOE2(3)  --------->MYB46(3) >ZAT14        <----------DOF2    <---------ARR14(2)         <---------ARR14(2) XXXXXXX>MIR159B     <----------DOF2     <---------REM1(2)   --------->ARR14(2) -ZAT14 <-----------GT1           --------->ARR14(2)        <---------CCA1(2)   gagctctttatttccgactttgtctttgccatcgagtatcgtcttcaaggtatcatcgcatcgtatccgccatttactacacttcgtaatctacaaatga  18021300                                                                  --------->ANAC58                                                                  --------->ANAC58                                                                ---------->DOF2                                                          ------>MYB83--------->ANAC58                                                          ------>MYB46(1)                                                          --------->MYB52(1)                                                        <---------MYB111(1)                        --                                                        <---------MYB46(2)                  ---------                      <---------ICU4                    <---------MYB55(2)                --------->AtMYB61                  <---------ATHB12                      --------->MYB46(3)          --------->ANAC58      <---------At4g35610                               <---------MYB111(2)         --------->ANAC58      --------->At4g35610                               --------->AtMYB61           --------->ANAC46    <---------ZAT18   <---------GLK1(2)                --------->ANAC46           ---------->DOF2  --    --------->ZAT18--------->YAB1                   --------->MYB46(3)--------->ANAC58  ------>NtERF2   aacaagtgagctctaaacaaatcataatctctaaacatgaaaatgcaatctatgaccaccaaacagagaagcaagcacaaggtccaaagccacctaaaga  18021400           <---------ARR14(2)           --------->ARR14(2)                                                 ---------->DOF2        --------->YAB1      ----------->RAV1(2)                           --------->YAB1 ------->ANAC58             <---------At4g35610                  --------->ARR14(2) ->DOF2 --------->ANAC46    --------->At4g35610   --------->ANAC58       <---------ATHB12 ------->ANAC58----------->GT1----------->HVH21   --------->ANAC58     --------->WOX13(1)   cactctatattcgtaactggtgaattcttcatctgacagtgtatgaattgacaagctaagttttcaaaatatgcaatcagaaaagaccatttccacaaac  18021500  Previous    Next  AGI:  At3g48590.1    Description:  HAP5A (Heme activator protein (yeast) homolog 5A); DNA binding / transcription factor. Identical to Nuclear transcription factor Y subunit C-1 (NFYC1) [Arabidopsis Thaliana] (GB:Q9SMP0;GB:O23635); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT5G63470.1); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT5G63470.2); similar to unknown [Populus trichocarpa] (GB:ABK95059.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 18019642    to: 18020967    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g48600.1    Description:  SWIB complex BAF60b domain-containing protein. similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G31760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63736.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) Range:  from: 18021106    to: 18022361    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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