Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------AHL20(2)                                       <---------AHL20(1)                                       --------->AHL20(1)                                       --------->ARR11(3)                                    --------->AHL20(2)             --------->TOE2(3)                                 --------->YAB1        --------->TOE2(3)                              <---------bZIP60(1)     ----------->GT1            <---------ANAC46                              <---------TGA2(1)      <---------TOE2(3)           <---------ANAC58                              --------->bZIP60(1)    <---------TOE1(3)           <---------ANAC58                         --------->ANAC58           <---------DOF5.7(2)    <---------ANAC55(2)        --------->YAB1   --------->ANAC58         --------->DOF5.7(2) --------->YAB1        --------->AHL20(2)   --------->MYB59     <----------DOF2----------->RAV1(1)              <---   aaaaaaacaatgaaattttgcaattgcaagttatgtcataatatatagtagctttaacgtaaaaaacaacattaatcacgtttgcgtttacatgtttata  18004600                                 --------->YAB1                                <---------YAB1                              <--------HAHB4                              <---------ICU4                          <-------TEIL                                                             --                   <-----------GT1                                                                 <-            --------->ANAC58  --------->YAB1             --------->ATHB12      <-----------GT1     --            --------->ANAC58 --------->ICU4           <------MYB46(1)  <---------AHL20(2)         ---            --------->ANAC46 <---------YAB1           <------MYB83     --------->AHL20(2)         --- ------AHL20(2)  <---------MYB52(2)<---------YAB1    --------->MYB59  --------->AHL20(2)   --------->TOE2(3)   ttatttcgacataaacgcaaataacatgttcatcattataaaacattctaaaaatttggttattggtgactatttattttgtaactcgacaaaacttaaa  18004700                                      --------------->AtSPL3                                      <---------------AtSPL8                                    <---------MYB46(3)                       <---------O2                                   <---------WOX13(1)                        --------->O2        <---------ARR11(3)        <---------ANAC58       <---------ANAC58    <---------TGA1a       <---------CCA1(2)          <---------ANAC58       <---------ANAC58    --------->TGA1a ------->GLK1(2)                 --------->ATHB12   <---------ICU4         <---------ALFIN1 --------ARR11(3)            --------->MYB52(2)  --------->bZIP60(1)     <---------ALFIN1       <---- ------->ARR11(3)         --------->TOE2(3)      <---------bZIP60(1)    --------->MYB46(3)   -------- ------>RVE1(1)           <----------DOF2      --------->YAB1    --------->YAB1              -------- ------>CCA1(1)        <-----------GT1--------------->AtSPL8    <---------YAB1 ----------->HVH21-----   aaatcttatatatctaacctatttttaactttagttgattgttgtacaatcacatcatttcgtcttatcatggaaccacacttgacaacaaattcacata  18004800         <---------AtMYB61                                                  <---------ARR14(2)      <---------DEAR3(1)                                                    --------->ARR14(2)     --------->ZAT14                                                       <----------TaMYB80     <---------ZAT14                                                 --------->CCA1(2)     --------->SPL7                                                  --------->GLK1(1)   <------NtERF2 --------->MYB52(2)                                 <---------ARR11(3)   <---------SPL7<---------MYB46(3)                                 --------->ARR14(2)  <---------DEAR3(2)    <----------DOF2          --------->YAB1     <---------ARR14(2) -----ICU4<---------MYB46(3)  <------ZmHOX2a(1) <---------ATHB12    --------->ARR11(3) ->ANAC46--------->ALFIN1   <---------TOE2(3)   --------->ICU4      --------->ARR11(1) ->ANAC55(2) <---------MYB46(3)      <---------AHL20(2)           ----------->ARR10          <------- ---->MYB52(1) <---------MYB52(1)--------->AHL20(2)             ---------->DOF2         ----------->GT1   atggcggtacggtggtcgtttgttaactttgaggattatataaaaacccaatgatcaaataacccaaaaagatatgcatattcgaataaggggttataag  18004900                                                               <---------WOX13(1)                                                              <------------CBF                                    <---------At4g35610 <---------WOX13(1)                --------->ZAT18                                --------->ANAC58       <------------CBF                   <---------ZAT14                                --------->ANAC46  --------->DAG2                          --------->ZAT14                                --------->ANAC58 ---------->DOF2<-----------GT1     *TSS  <---------ZAT18                       --------->ZAT14 --------->At4g35610<------MYB46(1)       <------------CBF<----                       --------->ZAT18 <---------At4g35610<------MYB83     <---------ALFIN1  ------>NtERF2 --YAB1                <---------ZAT14 --------->ZAT2 --------->ATHB12   <---------ALFIN1--------->ALFIN1   tgtaatttcaagtagatagtatatgtgcacagacacgaagcagcttacatataaagtgattggtaattgccatccccacacttattgagaagtgcagcct  18005000                                                                                                  <--                                                                                                 ----                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                           <---------                                                                                           ------->TEIL                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                           --------->GLK1(2)                                                                                           <---------ARR11(1)                                                                                          <---------ARR14(1)                                                                                          <---------GLK1(2)                                                         <---------ARR11(3)               <---------CCA1(2)                                                         --------->ARR11(3)             <---------MYB59                                                     ---------->DOF2          <---------ALFIN1 <-----                                              <------ZmHOX2a(2)      <-----------GT1--------->ETT(2)         <----------ID1                      <---------ARR11(3)   <----------DOF2--------->DEAR3(1)<- ------DOF2                 <---------ICU4   --------->ARR11(3) <---------At4g35610 <---------ETT(2)   tttagccaaaaaaaacaaacaagaatacaaaaatggctgaacaacaagatcatcacaaagagcttcagcttttaccttctccaccgtctaccgaatctcc  18005100                                                                                  <---------WRKY18(1)                ------>MYB46(1)                                                ------>ZmHOX2a(2)               --------->MYB52(1)                                            --------->ARR14(3)               ----------->RAV1(1)                                           --------->ARR14(2)              --------->AtMYB61   --------->AtMYB61          =========================HOX2a_HOX2a             --------->MYB46(3) ------>MYB46(1)           ==================HOX2a_HOX2a   <------ZmHOX2a(1)      --------->MYB46(3)              ============================HOX2a_HOX2a  ----------->GT1       <-----------GT1                   ===========================HOX2a_HOX2a --------->ANAC58    --------->YAB1  --------->YAB1   --------->ARR14(2)     <---------ARR14(2) --------->ANAC58 ----------->GT1--------->MYB46(3)   <---------MYB52(1)     <---------ARR11(3) -------MYB52(1)------>MYB83    ------>MYB83 --------->MYB46(3)              --------->ARR11(3) ----->LBD16------>MYB83--------->YAB1     --------->YAB1 ------>ZmHOX2a(1)  <---------ARR14(3) -GLK1(1) --------->DREB2C(2)  --------->ORA47(1)<---------ALFIN1        <---------ALFIN1 >HSFB2a(1) ------>MYB46(1)   --------->DEAR3(1) --------->DEAR3(1)  --------->MYB46(3) -HSFB2a(1)--------->ORA47(1) ------->GAMYB--------->WOX13(1)------>ZmHOX2a(1)<------ZmHOX2a(2) >GLK1(1) --------->MYB46(3) --------->DEAR3(2)  --------->AtMYB61   ------>ZmHOX2a(2) --ARR10  --------->DEAR4(1) --------->MYB46(3) --------->MYB46(3) <---------ARR11(3)--------->TOE2(3) ----LBD16--------->DEAR3(1)--------->MYB52(1)--------->YAB1 ========================HOX2a_HOX2a -------P--------->DEAR3(2)------->GAMYB  --------->MYB46(3) ===============HOX2a_HOX2a   ggtaaggaaacaccgaccaacagttataacaaccgaccatcacaacaatcaccaccgttcctcctccatgatccaccacgatcttgacctcaaactctcc  18005200                                              <---------AtMYB61                             <---------HSFB2a(1)                             --------->HSFC1(2)                               <---------ARR14(2)                             <---------HSFC1(2)     <---------ANAC58      <---------At4g35610                             --------->At4g35610    <---------ANAC46      --------->At4g35610                             --------->HSFB2a(1)    <---------ANAC58    <------NtERF2                             --------->ZAT2 <---------ANAC58           --------->LBD16                         --------->ALFIN1   --------->ALFIN1          <------NtERF2                     <---------At4g35610    <---------ANAC46          <----------CDC5                    ------->GAMYB         <---------MYB46(3)         --------->At4g35610                   --------->MYB46(3)    --------->ALFIN1            <---------LBD16              ------>ZmHOX2a(2)          <---------DEAR3(1)          ------>NtERF2       --------->LBD16              ====================HOX2a_HOX2a --------->ALFIN1       --------->LBD16    <---------RAP2.6(2)       --------->At4g35610   <---------At4g35610   <------NtERF2    --------->DEAR3(1)  <---------ANAC46       <---------ZAT2--------->At4g35610 <---------AtMYB61        <---------ZAT2       <---------LBD16       <---------At4g35610 <------ZmHOX2a(1)<---------ANAC58     --------->ANAC58   <---------ANAC58       --------->ZAT2<---------LBD16--------->MYB52(1)           --------->ANAC58   <---------ANAC58   atcagcctcagctcgatctcaacagcggaggagcttccaaacggtggtgtggaggcgttgaagtggcaagccgcggagcagataaggcttgcggctatag  18005300                                                                              --------->MYB111(2)                                                                              --------->MYB46(2)  ---                                                                              ----------->GT1     ---                                                                     <-------MYC3                 <--                 <-------GAMYB          --------->At4g35610          ------->MYC2                 ---           ------>NtERF2             <---------MYB52(1)              <-------MYC2              <-----       --------->ANAC46             <-----------HVH21                ------->MYC3        <---------ZAT2      --------->SPL7                --------->LBD16                  ------->PIF5        <---------STY1(2)    <---------SPL7                 <---------ANAC46                  <-------PIF5        --------->STY1(2)   <---------ANAC58        --------->WRKY12                       <---------ANAC58       --------->ZAT2   <---------ANAC58        --------->WRKY38(1)                    <---------ANAC58---------->DOF2 ---   agaaggcttacgccgagagggttagagagttgactcgccgtgagatggagatggctcagtctgagtttgctcgtgcaaggtagttaaagctagctcgatc  18005400        <-----------------AGL2    <--------ATHB1    -------->HAHB4    <---------ICU4    --------->YAB1   <---------YAB1   <---------ATHB51      --------->MYB52(1)                <---------At4g35610   --------->ICU4        <---------DOF5.7(2)               --------->At4g35610 --------->YAB1         <---------WRKY38(1)           --------->ALFIN1 ------>ANAC58         --------->DOF5.7(2)          <---------TGA1a ------>ANAC55(2)    <------MYB83                   <-----------RAV1(1)             --------->ZAT2 <- -------ANAC55(2)    <------MYB46(1)                <---------O2                    --------->At4g35610 -------->GT1       --------->MYB59                 <---------bZIP60(2)             <---------At4g35610 -ZmHOX2a(2)        <---------AtMYB61               <---------ANAC46                <---------ZAT2 == ------>ANAC58 <---------AtMYB61      --------->YAB1<---------REM1(1)       --------->ALFIN1       ==   aagtaataattctggttttggtttggttaacggttttgaattgtaaccagggtgatgtggcagaaggcaagggaagaagtggagagagctgagagattga  18005500  Previous    Next  AGI:  At3g48550.1    Description:  similar to ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01940.1); similar to ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01940.2); similar to ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5) [Arabidopsis thaliana] (TAIR:AT2G01940.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN68393.1) Range:  from: 18004984    to: 18005719    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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