Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                              -------                                                                                           --------->YAB1                                                                                          <---------YAB1                                                                                          --------->ICU4                                                                                         <---------AHL20(2)                                                                                         --------->AHL20(1)                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(1)                                                                                        --------->YAB1                                                                                        <---------ICU4                                                                                       <---------YAB1                                                                              <---------AHL20(2)                                                                              --------->AHL20(1)                                                <---------YAB1                <---------ARR11(3)       <---------ATHB12                     --------->ARR11(3)                --------->ARR11(3)     --------->MYB52(1)                   <---------ATHB12      <-----------GT1        --------->ICU4 ---AHL20(2)                     ------>ZmHOX2a(1)            <---------AHL20(2)    <---------YAB1 -->AHL20(2)                    --------->TOE1(3)            --------->YAB1   <---------AHL20(1) -AHL20(2)      --------->YAB1  --------->TOE2(3)      <-----------GT1        --------->AHL20(2)<----   ttaaaaccaatggagaaataaaaatttagtatttccttaaacaaatgattttgatattaactattttaactataaactaatatattctaattataattaa  17985200                                         <---------WOX13(1)                                         <-----------------AGL1                                   <---------AHL20(2)                                  --------->AHL20(2)                                           ------                               --------->AHL20(2)                                              <-----                              --------->AHL20(2)                                              <------         --------->ANAC46 <---------AHL20(2)                                                  <------ZmHOX2a(2)     <-----------GT1      --------->AHL20(2)                                                 <-------  <---------ICU4         --------->AHL20(2)                                            <---------YAB1 ---AHL20(2)             --------->YAB1  <-----------------AGL2                      ---------->DOF2< -->AHL20(2)       --------->YAB1 <---------AHL20(2)                            --------->AHL20(2)  < -------GT1     <---------ICU4<---------AHL20(2)                         <----------DOF2     --------   acaatttttacccataactaatgacaattaaaataaataaatgactgattttggacaatgttcaaatgttcttctcttttaaaaatataaagatagatca  17985300                                                               <-------TEIL   --------->At4g35610                           <----------DOF2 --->ATHB12                                <---------ANAC58 <------MYB46(1)                         < ----ICU4                                  <---------ANAC58 <------MYB83                           <- ---YAB1                                   --------->ALFIN1--------->MYB59                         <- --ARR11(3)                              --------->ALFIN1  --------->MYB46(2)              --------->ZAT14 ---------ANAC58                         <---------ANAC46  --------->MYB111(1)             <---------ZAT18 ---------ANAC58                      ------>ZmHOX2a(2)  <---------MYB52(1)                <---------ZAT14 ->ARR11(3)                          <------ZmHOX2a(2)   <<<<<<<<<MYB98            <-----------GT1 --   ttgctcgctgaaaattgttgacaacttgacatctaagcgatcggtgtgtgcctttgtaagttaggttgattctacagagtgagattaactctgtgaacta  17985400                                                           --------->ZAT6                                                     <---------ICU4                                                     --------->ATHB51                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                    <---------YAB1                                                    --------->ICU4                                             ----------->GT1                                             <---------ANAC58                                             <---------ANAC46                                             <---------ANAC58                                <-------                                             <---------ANAC55(2)                           --------->YAB1      <---------ANAC46                   <---------At4g35610                            <---------ICU4 ---------AHL20(2)                       --------->At4g35610            ----------->GT1 --------->YAB1 --------AHL20(2)           <---------ARR11(3)    --------->YAB1 <XXXXXXXXXXXXXXXXXXXXMIR829.2 --------AHL20(1)           --------->ARR11(3)   <---------YAB1  --------->TOE2(3)     --------->ICU4 ------->AHL20(2)         ----------->ARR10 <-------TEIL   <-----------GT1             <---------YAB1   ataaaattgtggagaatgagagagtgatgagatttttgaagtaagatgcgtataattatttatactaccttgaagggtttatttgggttataattagaat  17985500                                                                                       <xxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     <---------ARR14(2)                                                                                     <xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                     --------->ARR14(2)                                                                                    <------NtERF2                                                                                   --------->LBD16                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <---------RAP2.6(3)                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                  --------->LBD16                                                                                  --------->HSFB2a(2)                                                                                  --------->RAP2.6(2)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 <---------LBD16                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                ------>MYB46(1) -----                                                                                ------>MYB83   <xxxxx                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                --------->MYB52(1)  <                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                             --------->ZAT2  --------                                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <---------ZAT2 <xxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                       <---------ARR14(2)   ---------                                                                       --------->GLK1(2)    <xxxxxxxx                          <----------DOF2       --------->TOE2(3)      --------->ARR14(2)  <xxxxxxxxx              <---------ZAT14                  ----------->GT1        --------->RVE1(1)<xxxxxxxxxxxxx --YAB1       --------->ZAT14   <-----------RAV1(1)     ----------->RAV1(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   tgtattgtggtctctgtatagtcttgggctttatatgttgggctaaatattgttaatcccacaaaaaacaaaaaatccgacctgccggaatcgaaccagc  17985600                                                         <-------GAMYB                                                     <-----------HVH21                                                   <---------TOE2(3)                                                   <---------TOE1(3)                                               --------->At4g35610                                               <---------At4g35610                                              <xxxxxxxxxxxxxxxsmallRNA(fl3)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                            <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          ----------->RAV1(2)                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          ------>MYB46(1)<---------At4g35610                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          ------>MYB83  <---------DEAR3(2)                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         --------->MYB52(1)    ------------>CBF                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        --------->MYB46(3)  <---------At4g35610                                        <---------MYB111(1) --------->At4g35610                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->ARR14(1)               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       --------->CCA1(2)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      --------->ARR11(1)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      --------->ARR11(3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------GLK1(2)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <---------ARR11(3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ARR14(2)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ARR14(2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------->DOF2                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xsmallRNA(s)<-----------HVH21       <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(si3)               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxsmallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---->DEAR3(1)----------->HVH21      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ---------MYB59                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xsmallRNA(se3)                      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxsmallRNA(fl3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->TOE1(2) *TSS                    <----------DOF2 <---------AtMYB61 xxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >MYB46(3)--------->At4g35610 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <---------DAG2 xxxxxxxxsmallRNA(i)   --------->ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <----------DOF2 xxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(s) <---------MYB46(3)        <-----------GT1 xxxsmallRNA(s)        <---------ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <----------DOF2<---------   gacctaaagatttgctgtcacagactacagtcttccgctctaccaactgagctaaggtcggatgctgcaatacattcgctttgtttactttattaacaaa  17985700                    --------->REM1(1)                   <-------TEIL                                         <------MYB46(1)                --------->At4g35610                                     <------MYB83               --------->ANAC58                                        --------->MYB59               --------->ANAC58       ---------->DOF2                  <---------AtMYB61            <---------KAN4(2)     --------->AtLEC2             --------->ATHB12           --------->YAB1<---------ETT(2)                     <---------YAB1      --------->ZAT14 --GT1   <---------TOE2(3)  --------->REM1(1)     <---------YAB1   <---------MYB46(3)   tgtttacaactaagaataagctacatgtctacaacaatgcaaaagaattgacattatagacattctcattggtttggttctcactgttcacatttcattt  17985800                                                                                                   <-                                                                                                   --                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                 --------->ATHB12                                                <---                                <---------YAB1                                            <---------MYB52(1)                       <---------MYB59                       <-----------GT1            <---------ANAC46                    <---------ARR14(2)                ----------->GT1              <------MYB46(1) <-           <---------AtLEC2    <---------GLK1(2)      <------MYB83                 <------MYB83<-----      <---------ARR11(3)------>ZmHOX2a(1)             <------MYB46(1)--------->At4g35610<---------ANAC58  --------->REM1(1) --------->ARR14(2)          <----------DOF2   <---------MYB52(1)    <---------ANAC58   agcttcaacatctacatggccagttcctaactagattattgatttttgggcttatttggttattttcggtttgctcaatccaatttggtttcgtttgggt  17985900  <------NtERF2 --------At4g35610 ------->At4g35610 ------WRKY38(1)                                                              --------->AHL20(1) ------>CDC5                                       --------->ANAC58           <---------AHL20(2) ------WRKY12                                      --------->ANAC58           <---------AHL20(1) --------RAV1(2)                            <---------YAB1                   --------->AHL20(2) ------DEAR3(1)<---------ARR11(3)     <---------AHL20(2)                <---------MYB59 -----NtERF2 --------->ANAC58         --------->AHL20(2)               --------->ANAC55(2) ------HVH21 --------->ANAC58   --------->AtLEC2   --------->ANAC46   -------->P                   <-   cagcggcaagactacaagctctatttctaactcgatgcaaaaaattatgtttcaaggaattgaaccaaaacttacctgattatattcggttttggtatgt  17986000                               <------ZmHOX2a(1)                            <-----------RAV1(2)                             --------->ANAC55(2)     <                          --------->ANAC58                 <---------AHL20(2)                       =                 --------->ATHB12                 --------->GLK1(2)       <-----------GT1         <--     --------->AHL20(2)   --------->ANAC58    --------->YAB1    <-----------GT1                   <-- ----------GT1 <---------WOX13(1)         <---------ALFIN1 --------->AHL20(2)            <---------TOE2(3)   tttacaaatttatacagattgatttcgcaggcaggagtattgccacactgatattctatatataaataactcgtttttacatattctattaaacgttgtt  17986100  Previous    Next  AGI:  At3g48515.1    Description:  pre-tRNA. tRNA-Tyr (anticodon: GTA) Range:  from: 17985576    to: 17985611    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g48520.1    Description:  CYP94B3 (cytochrome P450, family 94, subfamily B, polypeptide 3); oxygen binding. similar to CYP94B1 (cytochrome P450, family 94, subfamily B, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G63450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68289.1); contains InterPro domain Cytochrome P450, E-class, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) Range:  from: 17985962    to: 17987655    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version