Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->ANAC58                  --------------->AGL15             --------->ANAC46            --------->ATHB12        <---------ICU4                --------->GLK1(2)                        --------->ICU4 ------->ANAC58  ----------------->AGL2         --------->ANAC58            <------ZmHOX2a(1) ------->ANAC58  ----------------->AGL3         --------->ANAC58         <---------LBD16 >DOF2 <---------ATHB12     <---------------AtSPL8  --------->ANAC58     <-----------RAV1(2)     ----   caagaacccatcagtactatccatgtttagcaagtacaagaatcaagctcaagcacgaaacatgaagacagagactcaggaatgatttgtaaacaaatgt  17972800                            <---------------AtSPL8                                   --------->ARR11(3)               <---------------AtSPL8                                                <---------ARR11(3)              <-------GAMYB --------------->AtSPL8                      <---------ANAC58       ------      <-------TEIL     <---------YAB1  <-----------GT1                  <---------ANAC46       <-----  <---------TOE1(2)  <----------DOF2  --------->AHL20(2)                <---------ANAC58    --------- --->TEIL    <-----------RAV1(1)     --------->AHL20(2)  <------ZmHOX2a(1)     --------->YAB1 <------   atcccaagttcatgtgtgttgtactttgattatgtacaatttaactacattgttagtaaggagtctatatagatgcctgtatcaaaacatctctcaatca  17972900                                              --------->ALFIN1                                          ------>MYB83                                          ------>MYB46(1)                                  <----------DOF2                                 ------>ZmHOX2a(2)                               <---------ARR11(3)                               --------->ARR11(3)<---------YAB1      <-----------GT1        <---------YAB1 ------->GAMYB --->YAB1                <---------DAG2  --------->MYB52(1)                   --------->YAB1 ----ICU4<----------DOF2 <----------DOF2------->GAMYB                    <-------TEIL >WOX13(1)            --------->ANAC58 <---------MYB52(2)       <---------REM1(1)                ---- ---ATHB12            --------->ANAC58 --------->MYB46(3)   <-----------HVH21 --------->TOE2(3)  ----   tgtgtttattactttagcctaaacaagctttatgatctttaaccaacggtgttgatagtactggtcatgtaggggttcatccataactaaacgtctaaac  17973000                                                    --------->AHL20(2)                                                    <---------AHL20(1)     --------->AHL20(2)    --------->YAB1           --------->AHL20(1)     <---------AHL20(2)   <---------ATHB12          <---------ARR11(3) ----->TOE1(3)          --------->WOX13(1)          --------->ARR11(3)                            <<< ----->TOE2(3)  --------->MYB52(1)                  <---------AHL20(2)   <-------TEIL --------->TOE2(3)   cttatattaaaatgggtctaactgatcaatcaaaaacatttggggtcaaaacaatatattggataaatataagggttcatcaaaaaaaacttaacatttc  17973100                                                                                                 ----                                                                                                -----                                                                                           --------->AtLEC2                                                                                         --------->YAB1                                                                                         *TSS   <----      --------->At5g28300                                                               <---------ATHB12     ----------->GT1            --------->ANAC46                                       ------->TEIL --------->ZAT14                --------->ANAC58                               <--------------------- <---------ZAT14  ---------->DOF2         --------->ZAT14 --------->TOE1(3)  ----------->HVH21  <---- <<<<<<TBF1  --------->AHL20(2) --------->ANAC58          --------->TOE2(3)  ----------->TGA1 -------   ttcttcactgtaaaatgaaataaagcttatccatactcaacttcttcactctctcttaaaccttcaaaaaccctgaagagtgacgaatgaatcatgcaga  17973200                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                          <---------CCA1(2)                                                                                          <---------GLK1(1)                                                                                     ---------->ID1                                                                                    <-----------HVH21                                                                                   --------->O2                                                                                   <---------O2                                                                               ------>NtERF2                                                                               --------->ABI4(1)                                                                              --------->ANAC46                                                                              <---------ALFIN1                                                                              --------->DEAR3(1)                                                                             --------->ATERF1(1)                                                                             --------->DEAR4(2)         ------>MYB46(1)                                                    <---------ATERF1(1)         ------>MYB83                                                       <---------At5g28300  <--- ----->GLK1(1)                                                           <-----------HVH21--------->GLK1(1) ---->ARR14(2)                           --------->TOE2(3)              --------->YAB1   ---------->TaMYB80 -----ARR14(2)                           --------->TOE1(3)     <---------ARR11(3)  --------->TGA1a  - --TaNAC69(2)         <----------DOF2--------->AtMYB61         --------->ARR11(3)  --------->bZIP60(2) -----GLK1(2)         <---------DAG2--------->MYB46(3)     ==================================bZIP_DOF ---->ARR10        <-----------GT1  <---------MYB52(2)     ---------->DOF2 <---------WRKY38(1)   ----   tttgccaaaccaagctcaatttcactttccctaatcccacaaaccctaatttctgcaaacccaaagctcttcaatggtcaccgcctcgtcgcatatcctt  17973300                 <---------ZAT2                 --------->At4g35610                 --------->ZAT2            <---------ARR14(2)            >>>>>>>>>GATA-4            >>>>>>>>>GATA-1                         <---------HSFB2a(2)                             <            --------->ARR14(2)                    ------>ZmHOX2a(1)                                 -       <---------ANAC46                        ------>MYB83                                         -       <---------ANAC58                --------->ANAC58                                             -       <---------ANAC58                --------->ANAC58                                             -     <-----------HVH21                 --------->ANAC46                                             <  <---------ANAC58                  <---------WRKY38(1)                                             -  <---------ANAC58    --------->At4g35610      ------>MYB46(1)        <------ZmHOX2a(1)           --- ------ZAT2 >>>>>>>>>GATA-2--------->GLK1(1)--------->HSFB2a(1)      <----------ID1              ---- ----->NtERF2    <---------At4g35610<---------ETT(2)--------->HSFB2a(2)  ---------->DOF2  ------->TEIL ----->ZAT2 >>>>>>>>>GATA-3<---------GLK1(1)<---------HSFB2a(1)   ---------->DOF2      <---------REM1(1)   gctgccttgtcgtggattcagctccgatgaattcccagtcgacgaaaccttcctcgagaaattcggaccaaaggacaaagacacagaagatgaagctcga  17973400                  <---------MYB46(3)                 --------->ALFIN1   --------->MYB52(1)   --------->ARR14(2)   <---------ARR14(2)                                 <---------At4g35610 ---------ANAC55(2)   <------MYB46(1)                --------->GLK1(2) -------->ANAC55(2)   <------MYB83            --------->ANAC58                                    <-- -------->ANAC58<-------MYC3                  --------->ANAC46                                    --- -------->ANAC46------->MYC3                  --------->ANAC58                                <------ -------->ANAC58------->MYC2            --------->GLK1(2)         ----------->GT1             ------- ---------bZIP60(1) <--------P         <---------GLK1(2)          --------->ANAC58           -------- -------->bZIP60(1)<-------GAMYB       --------->ARR14(2)         --------->ANAC58           <------- --->NtERF2------>ZmHOX2a(2)         ----------->ARR10--------->At4g35610                    <------- ----->DEAR3(1) <-------MYC2       ----------->ARR10<---------GLK1(2) <---------CCA1(2)     ---------   cgacgtaactggatcgaacgtggttgggctccatgggaagagattctcacaccagaagctgatttcgctcgtaaatctctcaacgaaggtgaagaagttc  17973500        <---------LBD16      ------->GAMYB     --------->MYB46(3) -------At4g35610 ------>At4g35610 ---ARR14(2) -->ARR14(2) ->HSFC1(2)                                                         <------ZmHOX2a(1) --HSFC1(2)<------NtERF2          --------->At4g35610             <---------TOE2(3)                 - --HSFB2a(1)      <------ZmHOX2a(2)                     >>>>>>>>>TBF1          --------->MYB52(1)---- -->ARR10 --------->LBD16       --------->ARR11(3)  <------ZmHOX2a(1)   --------->ALFIN1         ----   cgcttcaatcgccggaagcgatcgaagcgtttaagatgctgagaccatcgtataggaagaagaagattaaggagatggggataacagaagacgaatggta  17973600                                                                                          <---------WOX13(1)                                                                                        --------->ATHB12                                                                                     <---------O2                                                                                     <---------ANAC46                                                                                     --------->bZIP60(2)                                                                                     --------->O2                                                                                    ------>NtERF2                                                                                    <------NtERF2                                                                                    --------->LBD16                                                                                   --------->DEAR3(1)                                                                                --------->ANAC46                                                               <---------HSFC1(2)<---------At4g35610                                                               <---------MYB46(3)--------->LBD16           <---------TOE2(3)    <---------ALFIN1             <---------MYB52(1)<---------LBD16  --------->ANAC58           --------->AtMYB61         <------MYB46(1)       --------->ARR14(2)  --------->ANAC58           <---------ALFIN1<---------ARR11(3)--------->HSFC1(2)------>NtERF2      - --------->DOF2             --------->MYB46(3)         <------MYB83         <---------ARR14(2)     -- ----->ANAC58             <-----------GT1    --------->ARR11(3)--------->HSFB2a(1)--------->ATERF1(1) ----->ANAC58      ----------->GT1  <----------DOF2   <---------MYB46(3)   <----------TaMYB80      <-   tgcaaagcaatttgagattagaggtgataaaccacctcctttagaaacatcttgggctggtccgatggttcttaggcaaattccgccgcgtgattggcct  17973700  Previous    Next  AGI:  At3g48490.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK93013.1) Range:  from: 17972274    to: 17972895    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g48500.1    Description:  PDE312/PTAC10 (PIGMENT DEFECTIVE 312); RNA binding / unfolded protein binding. similar to B1065G12.12 [Oryza sativa (japonica cultivar-group)] (GB:BAB90530.1); similar to CONSTANS interacting protein 5 [Lycopersicon esculentum] (GB:AAS67373.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68253.1); contains InterPro domain Tubulin binding cofactor A; (InterPro:IPR004226); contains InterPro domain S1, RNA binding; (InterPro:IPR003029); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 17973189    to: 17976598    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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