Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  <--                                                                                                 <--- -------->AHL20(2)  <---------TOE1(2)                                                            ---- --------AHL20(2) --------->TOE1(2)                                                              <--- ---->ATHB51     ------>ZmHOX2a(2)                                                               ---- ----ATHB1      <------ZmHOX2a(2)               ---------->DOF2                                  <--- -----AHL20(2) --------->ARR11(3)       <-----------GT1                                          <--- ---->AHL20(2) --------->ARR14(2)   <---------AHL20(2)                   <---------YAB1          ---- -----ICU4     <---------ARR11(3)   <---------ARR11(3)              <---------AHL20(2)           ---- --->ICU4      <---------ARR14(2)   <---------AHL20(1)             <---------AHL20(2)            <--- ----YAB1      --------->AGP1       --------->AHL20(1)             --------->AHL20(2)           <---- ->YAB1       --------->GLK1(1)     --------->ARR11(3)    ---------->DOF2<---------AHL20(2)  <------- >ICU4        <---------GLK1(1)     --------->AHL20(2)---------->DOF2  <---------ICU4        <------- -YAB1<---------TOE2(3)    <---------YAB1<---------AHL20(2) ----------->GT1               <---------At4g35610   atttaactaaggtctgagatccttggattatcaaacaatatatttcatttcaaagtgaaagaaagaaaattaaatattattcaatatagttgtgctcagg  17962300 ---->ZmHOX2a(2) ----ZmHOX2a(2) ------ARR14(3) ----->ARR14(3) ------AGP1<---------ARR11(3) ----->ARR14(2) ------ARR14(2) ------ARR11(3) ----->ARR11(3) ----->GLK1(2)     ------>NtERF2                           ------>ZmHOX2a(1) --------ARR10    --------->LBD16                  --------->YAB1 --ZmHOX2a(1)   <---------LBD16              --------->ANAC58 ----RAV1(2) ---------->DOF2                 --------->ANAC58 --LBD16   --------->ARR11(3)       ------>ZmHOX2a(1)    ----------->RAV1(2)   atcttgttttcaagataatgcggacatagctacagttcctatatagctcgcattgatactcctggccaaggccaagtttgcagagccagtatggtatagg  17962400                                <---------DAG2                                <----------DOF2                           ------>ZmHOX2a(1)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       --------->ARR14(2)                       --------->ARR11(3)                       <---------ARR14(2)                       <---------ARR11(3)                              --------->WRKY18(1)                      --------->RVE1(1)                       --------->YAB1                 --------->AHL20(2)                   <----------DOF2----------->GT1     <-----------                 <---------AHL20(2)     ----------->GT1    --------->YAB1       ---------->DOF2  <---   cttcccatcccaaaaacatttaaaaaatcctcgactttttttttgtaaaataggctctttgtaataacaaatggtcaaactacaaagagcctattggacc  17962500                                                                                 ---------->DOF2                                                                               --------------->AGL15                                       <------------CBF                        <---------------AGL15                                      --------->ATHB12                        ------>ZmHOX2a(2)                                     <---------YAB1                         --------->ARR11(3)                                     <---------AHL20(2)                     <---------AGP1             <---------YAB1 -------->HAHB4                                  <---------ARR11(3)           <---------AHL20(2)       <-----------TBP                         <---------ARR14(2)          --------->AHL20(2)<---------ICU4                                  --------->ARR14(2)  -----          <---------AHL20(2)--------->ATHB12                             --------->ALFIN1      ------ -CBF <-------TEIL         --------->ICU4                              <---------ANAC46  <---------WRKY12 ------HSFB2a(2)           <---------YAB1       ---------->DOF2        <---------bZIP60(2)<---------DOF5.7(2)   tagaaagattcatttattagaggcccaaaatgattagtttttattgggcctaaagaatttagaaatatgtatgaagtggatctaaaagaggtaaacgacg  17962600                                                                            <------NtERF2                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                         <---------LBD16   <-----------GT1                                                   <---------AtLEC2 ->NtERF2                 --------->ETT(2)      <-----------GT1 <----------DOF2       --------->ANAC58 --->DEAR3(1)      <---------ICU4   <---------GLK1(2)           <---------DAG2        --------->ANAC58   acgttttactcttcttcttaaaaattagtctacagacaaattcttctaattttcgctctctccaaacttttccatggcggaagggactaagcaagagaga  17962700                                                                                            <--------                                                                                            <--------                                                                                       <---------ICU4                                                                                --------->ANAC46    <                                      --------->ARR14(2)                     ------>ZmHOX2a(2)      <                                    <---------RAP2.6(3)                     --------->GLK1(1)    <---                                   --------->RAP2.6(2)                      <---------GLK1(1)  ------                                --------->GLK1(2)                          --------->ARR11(3)  <-----                              ---------->DOF2                    --------->ETT(2) <---------MYB52(1)-                            <------NtERF2                        <---------ETT(2)--------->LBD16-----                          <---------DEAR3(1)                    --------->DDF1 <---------LBD16-------                        <-----------HVH21               ---------->DOF2    <---------ARR11(3)<-------   acgcttgaaaacaatttgctccacaaggtcggagaagccgtctctgctatttctgatgcaaagcatgtcgaccaagtgatctccgctattcattccgtcg  17962800 -ANAC58 -ANAC58 ---------ARR14(2) ---------MYB52(1) ---NtERF2         <------ZmHOX2a(2) --->DEAR3(1)   <---------ETT(2)   --------->LBD16 ----DEAR3(1) <-----------HVH21   <---------HSFB2a(2)                      --------->TOE2(3) -------->ARR14(2)<---------ARR14(2)<---------MYB52(1)                    --------->ANAC46 ->NtERF2   --------->LBD16       --------->HSFB2a(2)                     <---------At4g35610 -->ATERF1(1)--------->LBD16     <---------LBD16<---------ATHB12        <-----------GT1 ----HVH21 <---------LBD16<---------MYB52(1)  --------->WOX13(1)  <---------YAB1               ------   ccgttcttctcttcccggtcgatccatcgttgttttccggtaatcaaacaatcacttgttcatctattcttatttcacctcagtcccttctcaattcaaa  17962900                                                                             <-------TEIL                                                                             --------->ZAT14                                                                             <---------ZAT14                          --------->ANAC55(2)                             --------->ANAC58                          <---------ANAC55(2)                             --------->ANAC58                          --------->ANAC58                           <----------ARF1                          --------->ANAC58              <---------AtLEC2 <---------------AtSPL8                       <---------MYB52(1)  <-----------GT1           <----------ID1 ---->DOF2         <-----------GT1        <-----------GT1       <---------ARR14(2) ---------->DOF2   agttcagtttttgggctgttttttcgttacgaaatttgttgatatttccaattcaattgcagggagtattggggacaagtacagagaaagggtttgtatt  17963000                                                                              <---------ALFIN1                                                                             --------->ZAT14                                           <----------DOF2                   --------->LBD16                                        <---------ARR11(3)                 <------NtERF2                                       <------ZmHOX2a(1)      <-----------------AGL2                                <---------MYB46(3)            <-----------------AGL3                             <---------ANAC58              <---------GLK1(2) <---------ZAT14   <------ZmHOX2a(1)         --------->MYB52(2)  <---------ANAC58         <---------ATERF1(1)  <----- <---------TOE1(3)           <---------ANAC58    <---------ANAC58        <---------DEAR3(1)    ------ <---------TOE2(3)  <---------ALFIN1<-----------RAV1(2)  <---------YAB1  --------->ARR14(2)<---------AGP1   tttaaggaaattttgaaatgctccacattgttcgtggttcaggaacttttggcttacttatgattctctatttgggctccgcacaggtctgtagctctgt  17963100                                                             <---------TOE1(2)              <--------                                                        <---------ARR14(2)           <------MYB83                            <--------P               <---------ANAC46                <------MYB46(1)                          <---------MYB46(3)         <---------ANAC58             <---------AtLEC2                      --------->ATHB12               <---------ANAC58             <---------ANAC58       <---------At4g35610--------->ATHB12      <---------REM1(1)                 <---------ANAC46 ----ZAT14--------->At4g35610 <------MYB46(1)   --------->ALFIN1<---------MYB52(1)<---------ANAC58 --->ZAT14<---------At4g35610 <------MYB83      <-----------RAV1(1)          <-----------RAV1(1)   agttccttctgcagatgagagaaatgaatggttggagacgttctatcgaggtgttgcgtttccaacgtttgctcgagttttgttgcttggtaagcttttg  17963200  Previous    Next  AGI:  At3g48470.1    Description:  EMB2423 (EMBRYO DEFECTIVE 2423). similar to Os02g0599100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047336.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17205.1); similar to hypothetical protein OsI_007794 [Oryza sativa (indica cultivar-group)] (GB:EAY86561.1); contains domain PTHR15830 (PTHR15830); contains domain PTHR15830:SF5 (PTHR15830:SF5) Range:  from: 17962674    to: 17967797    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version