Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                  ---        ----------->GT1               <---------At4g35610                                     <------  <---------ANAC58                ----------->RAV1(1)                                         ------>ZmHOX2a(1)  <---------ANAC46               ----------->HVH21                                        --------->ARR14(2)  <---------ANAC58             ------>ZmHOX2a(1)                        --------->ATHB12  <---------ARR14(2) >ARR14(2)                    --------->TOE1(2)                       <----------DOF2 --------->At5g28300 -ARR14(2)               <---------TOE1(2)                <-----------HVH21      ----------->HVH21<--   catttcttggaggtgaaacaatactctcaggtcctgcgacagcggttttcatcgtcttcttgtcatcgcgagctttattgaaaatgacagtgaatccttc  17955500                                                                         ------>MYB46(1)                                                                         ------>MYB83                                                                       <---------MYB111(2)                                                                       <---------MYB46(2)                                                                       <---------MYB55(2)                                                                       --------->AtMYB61                                                                       <---------MYB111(1)                                                                       --------->MYB46(3)        <------ZmHOX2a(1)                                             --------->ANAC46       --------->ICU4                                               --------->AtMYB61     <-----------RAV1(2)                                         --------->ANAC46  --------->ANAC58                                               --------->ANAC58  --------->ANAC58                                               --------->ANAC58 -------->DEAR3(1)                                             <---------ALFIN1 ------>At4g35610                                             <---------REM1(2) -----HVH21                                                   --------->ZAT14                 <------ -------At4g35610           --------->LBD16        <----------DOF2 --------->MYB46(3)    --------->MYB52(1)   agccgagccaggattagtcgcatcccattccccaaattttggcaatggtctcgctctatttccctacacaccaccaaacaaacaaaacaaaaaacagaat  17955600        --------->AHL20(2)       --------->AHL20(2)      <---------YAB1     --------->TOE2(3)    --------->ATHB12    <---------ICU4    <--------HAHB4    --------->GLK1(1)   <---------YAB1    <---------ARR14(2)                --------->CCA1(2)      ---------->DOF2   --------->ICU4    --------->ARR14(2)         <-----------GT1  ----------->GT1 ---GLK1(2) --------->AHL20(2)             <----------DOF2    --------->CCA1(2)                    --   tgttcatcattaaaaaaaatgcagatttctagccaaagtttgagactttttttcaagataagagatttggaaaattgtatgaaaggagggaagttttgaa  17955700                                                                   --------------->AGL15                                                                   <---------------AGL15                                    --------->CCA1(2)             <-----------------AGL1          ---                     ------->TEIL<---------TOE2(2)                <-----------------AGL2          ---                <---------At4g35610<---------ARR11(3)             ----------------->AGL1          <--           ----------->GT1       <---------TOE1(2)             <---------MYB52(1)           ---------      --------->ANAC58     --------->ARR14(2) <-------TEIL <---------At5g28300             <---------ARR14(2)      --------->ANAC58 --------->YAB1      --------->CCA1(2)  <-------GAMYB                --------->ARR14(2) ------->YAB1   --------->At4g35610--------->ARR11(3)     <-----------GT1                 <------ZmHOX2a(1)   atcatatcaagaaatgtaagatgaatcagaattcgtagatataagagatgcatattgttcttaccgttgccattgttggaattagaaacagaggatttcg  17955800                                                      ----------->GT1                                                      --------->LBD16                                                    ------>ZmHOX2a(2)              --------->CCA1(1)                   --------->ARR11(3)      <---------TOE1(1)                           <---------ARR11(3)      <---------TOE2(1)                           <---------ARR14(2)    --------->CCA1(2)                           <---------YAB1   <---------ARR14(2)                         --------->YAB1   --------->ARR14(2)                        <---------YAB1 ------>GLK1(2)       --------->ARR11(3)   --------->YAB1                 ----------->GT1         <-- ------>ARR14(2)      --------->GLK1(2) ===================HOX2a_HOX2a   *TSS                  <----- -------ARR14(2)      <---------ARR11(3)<------ZmHOX2a(1)         ----------->GT1            -------- >GLK1(1) <------ZmHOX2a(1)   ---------->DOF2--------->ICU4---------->DOF2--------->YAB1    <------ZmHOX2a(1)   aatccgatacgaggaaatatccaaaatctagagaaagagagaggatgatgatgatctgggaaaaagagaggtgaaattgtaatatagaagaagaggagga  17955900                                                                                   --------->MYB52(1)                                                                                   ----------->RAV1(1)                                                                             <----------DOF2                                                                             <---------GLK1(1)      <                                                                             --------->GLK1(1)      <                                                           <----------DOF2 <------NtERF2        -----                                                  <---------GLK1(2)       ------>NtERF2         -----                   <-------GAMYB                  --------->ARR14(2)     <---------DEAR3(1)   <------     <------ZmHOX2a(1)      ----------->RAV1(1)--------->YAB1           --------->LBD16       <------ ----ZmHOX2a(1)   <---------MYB46(3)     <---------DAG2<-----------GT1 --------->ANAC46      -------- -ZmHOX2a(1)     <------NtERF2  --------->ANAC46  <---------ARR14(2)  <---------LBD16 ------->GAMYB<- ->ALFIN1      <---------DEAR3(1)        <----------DOF2  <---------DAG2<---------LBD16      <-------   ggagagaggagaagaggtcgtcgttgaaaacaacacaaaactccttttttcatattctcacctttcttccttcccgcggctttcccaacagaaataccta  17956000                                                                                               <-----                                                                                               ------                                                                                               ======                                                                                              -------                                                                                            ---------                                                                                           <---------MYB111(2)                                                                                           <---------MYB111(1)                                                                                           --------->DEAR3(1)       ----------->GT1                                                                     --------->AtMYB61   <---------YAB1                                                                          <---------MYB46(2)  <---------AHL20(2)                                                                       <---------MYB59 ---------AHL20(2)                                                --------->AtLEC2         <---------MYB55(2) ---------YAB1                                                 <------ZmHOX2a(2)   <----------DOF2 ->MYB46(1)                                                   --------->ARR11(3)  <---------DAG2 ->MYB83                                                   --------->ALFIN1  <---------ANAC58------>MYB46(1) ---MYB111(1)                --------->DAG2               ------->MYC3       <---------ANAC58------>MYB83 ---MYB59                   ---------->DOF2  ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->ANAC55(2)    <---------------AGL15   ------------------------>ANAC81    --------->ARR11(3)-------- --------AHL20(1)      ----------->GT1  ----------->GT1   <-------MYC3  <---------ATHB12   --------->MYB46(3) --ANAC55(2)    =====================================================================================   atattattttagtaaattcaaaatgaagaaaaaagtcatagagagcaaaaagactaaaaacgtggatcatgccaatagttcttgccttttccacctaccc  17956100                                                                                                 <---                                                                                                 ----                        <---------ANAC46                                                         <---                        <---------ANAC58                                                     --------                  <---------AHL20(2)                                                         <------- ----------AGL15  <---------YAB1      <---------DAG2                                        <-------- --------->AGL15  --------->AHL20(1)  <----------DOF2                   <----------ID1      --------- ====================================================================MADS_MADS              --------- ---------->AGL2 --------->YAB1--------->ICU4                      --------->MYB52(1)      --------->YAB1 >MYB55(1)       --------->AHL20(2)<-----------GT1   ================================================ >P             <---------ATHB12<---------ICU4       <---------------AGL15          <---------YAB1<-- ==========MADS_MADS    <---------ANAC58     <---------TOE2(3)<---------ZAT6   --------->YAB1<-------   tattcagtatttctatcaataatattgcttctaatttttacttttctaatgtaatctctaattagtgacaaacagagacaaaaattattctaaatataat  17956200   <---------AHL20(2)   <---------YAB1 ------AHL20(1) ----->AHL20(2) ------AHL20(2)            --------->AHL20(2) ->AHL20(2)    <---------------AGL15 --AHL20(2)   <-----------------AGL3 -AHL20(1)    ----------------->AG                               --------->ANAC58                 <-- >AHL20(1)    ----------------->AGL2                             --------->AtLEC2                 --- >AHL20(2)    <-----------------AGL2                <----------DOF2                            ------ ==============================MADS_MADS----------->GT1     <-----------GT1                 <-------- -------AHL20(2)           <---------AHL20(2)  ---------->DOF2   --------->ANAC58     --------->ZAT6 --YAB1       ----------------->AGL3 <---------ANAC46   --------->WOX13(1)          <-----------GT1 -   ttttttttattgtctatccaaatgtggatttatatagttatgtggaaaaaaaagctttcaattaaccatgccaaaatttttgagtttaacagttctttaa  17956300                                                                         <---------LBD16                                                                        <---------ALFIN1                                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                -------->HAHB4                                                                xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                --------->ATHB12                                                               <---------ATHB12     --------->ALFIN1                        <---------YAB1    <---------YAB1 <---------ICU4                           <---------YAB1       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->YAB1                          --------->AHL20(1)    --------->ICU4 -------ICU4                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-------PIF5      <------- ------>YAB1                     <---------ZAT14          --------->TOE2(3)------->PIF5xxxxxxxxxxxxxx --->YAB1                       ----------->GT1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------ --DOF2    <---------YAB1  <---------HSFB2a(2)           <---------ANAC55(2)    --------->GLK1(1)<--- -------->ICU4             --------->HSFB2a(2)--------->YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---   taataatgtgggcataatagaaaatacttctagactgtagaaatattatgacaactgttacataaatgattgtaccacgggcaattccttccgaccttta  17956400  Previous    Next  AGI:  At3g48450.1    Description:  nitrate-responsive NOI protein, putative. similar to nitrate-responsive NOI protein, putative [Arabidopsis thaliana] (TAIR:AT5G63270.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14640.1); contains InterPro domain Nitrate-induced NOI (InterPro:IPR008700) Range:  from: 17955014    to: 17955873    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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