Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 --------------->AGL15               <---------------AGL15         --------->ZAT2                                                                             <         --------->At4g35610      <---------ARR14(2)                                               <-         <---------At4g35610      --------->ARR14(2)                                            <----  ------>ZmHOX2a(1)     <---------ZAT6                                           --------->AtLEC2  -- ---------GT1 ----------------->AGL3              <-----------GT1 --------->At4g35610         ------- ----GLK1(1)  ----------------->AGL2  ------>ZmHOX2a(1)           <---------At4g35610      <---------MYB52(1)   tctccttactaagctcaccataaatagtcttataagtatcctcgtctaaataaaaccctccttgtttcatctccctcagagtcatccaaaaccgtttcat  17882500                --------->ARR11(3)        --------->ZAT14        <---------ZAT14        --------->ZAT18        <---------ZAT18     <---------At4g35610     <---------ZAT2     --------->At4g35610     --------->ZAT2    <-----------RAV1(1) --------->YAB1 ==========================HOX2a_HOX2a ------>ZmHOX2a(2)    ----------->RAV1(1)                                             ----------->GT1 ---------GLK1(1)   ------>ZmHOX2a(1)   --------->ZAT14                   ----------------->AGL2 --------ARR11(3)  --------->TOE2(3)    <---------ZAT14                   ----------------->AGL1<---- -----WOX13(1)  --------->ARR14(2)      --------->ZAT18        ------->TEIL         ---------->DOF2 ------->ARR11(3)  --------->TOE1(3)   --------->ALFIN1       <---------CCA1(2)  <---------HSFB2a(2) -->ATHB12      <---------ARR14(2)   <---------ANAC46         <---------GLK1(2)<---------ATHB12 <----   tgatctctgctgcactaaaatcctcaacataatgctatagagtggagtacttggactaagccctgaatctctcaaaacccaatcgagaaagtaataagct  17882600                                           <---------ANAC58                                           --------->O2       <---------HSFC1(2)                  <---------ANAC46                                         -       --------->HSFC1(2)                  ===================bZIP_DOF                              -     --------->ARR14(2)                    <---------TGA1a                                          <     <---------ARR14(2)      --------->TOE2(3)                                                     <-     <---------ARR11(3)     --------->ANAC58       ---------->DOF2               ------>ZmHOX2a(1)---    <------ZmHOX2a(1)       --------->ANAC58    <-----------HVH21            ------>ZmHOX2a(1)    --- <---------LBD16            ----------->GT1--------->TGA1a            ------>ZmHOX2a(1)          ---- ------DOF2           ------>ZmHOX2a(1)    <---------O2              --------->TOE2(3)    ------>ZmHOX2a(1) -----DAG2           --------->TOE2(3)     <---------ANAC58      --------->GLK1(1)       --------->TOE2(3)   ttttcaggatacttctccaatttcctcagaacgtaaattgcagtctcgtgtgtcaaagacatatcaggtttcctcaatccttcctctacttccttagacc  17882700                                                      <---------HSFC1(2)        --------->ANAC58                              <---------HSFB2a(1)        --------->ANAC58                              --------->HSFB2a(1) -------->YAB1                                        --------->HSFC1(2) ------->ATHB1                                   <---------------------WRI1 ---------ICU4                             ---------->DOF2 --------ATHB12             --------->GLK1(2)--------->DAG2 ---------->DOF2 --->MYB46(1)               --------->ARR14(2)   <-------TEIL                              ------->TEIL --->MYB83   --------->ICU4 <---------ARR14(2)<---------HSFB2a(1)                       <---------ATHB12 ----->WOX13(1)            <---------GLK1(2) <---------------AtSPL8            --------->ATHB12   aatcattctcaagcactaattgaagcatagaatctggtttcgaagaaaaggttcgaaatttccaaagaaatcgactagggacgattgcaaatgaatcgag  17882800                                                           --------->CCA1(2)                                           --------->ARR14(1)                                           --------->CCA1(2)             <XXXXXXXXXXXXXXXXXXXXXXXMIR836                                <---------ARR14(2)         <------ZmHOX2a(2)                              ----------->ARR10           <---------ARR14(2)                           --------->TOE2(3)    <------ZmHOX2a(2)      <---------ANAC58                           --------->TOE1(3)<-------TEIL  <---------ARR11(3)                         ------>MYB83     --------->ARR14(2)           <---------ANAC58                         ------>MYB46(1)  <---------ARR14(2)------>ZmHOX2a(2)                        <---------ALFIN1  --------->ARR11(1)=====================================HOX2a_HOX2a                <------ZmHOX2a(1) ------>ZmHOX2a(2)       --------->ARR11(3)              ===========                =========================HOX2a_HOX2a      --------->ARR14(2)<---------ANAC46              <---------TOE2(3) --------->ARR14(2)        --------->AGP1 --------->ALFIN1 <------ZmHOX2a(1)      <XXXXXXXXXXXXXXXXXXXXMIR865-3P    ----------->ARR10<---------GLK1(1)--------->REM1(2) ---------   aggcgaagacaagtttgaggaaaaacccaccttagatcggcttagatacgatcgagtagagatctgtgagtacgcgtgtcgaagagaagacaggattgcc  17882900                                                                                    <--------ATHB1                                                                                   <---------YAB1                                                                                   <---------ATHB51        <---------AtLEC2                      <-----------------AGL1           ------------>CBF       <---------REM1(2)               <---------ANAC46                    ----------->GT1   ------>ZmHOX2a(2)                   <---------ANAC58            <------ZmHOX2a(1)--------->YAB1 =========HOX2a_HOX2a                  <---------ANAC58<------ZmHOX2a(1)  --------->DAG2       ------ >GLK1(1)         <---------At4g35610<---------ANAC46<---------TOE2(3)   ---------->DOF2       ------   attgatctgtacatggctacagatgctactactgtgattttgtgtgttttcgaataaggaagagggagaggaagagaaagtgacaataatagggtttaag  17883000                                                   --------->AHL20(2)   <-----------GT1                                                  <----------DOF2   <---------RVE1(1)                                               <---------ANAC58     <---------CCA1(1)                                               <---------ANAC58    --------->ARR11(3)                                               <---------ANAC46    <---------ARR11(3)       <--------              ------>ZmHOX2a(1)      --------->LBD16              --------->YAB1<------MYB46(1)    ------------>CBF                 ------>ZmHOX2a(1)           <---------YAB1 ----------->GT1    <- --->ANAC58   --------->LBD16      ----------->RAV1(2)    ----------->GT1     <--------P    <-------- --->ANAC58 <---------LBD16    <-----------GT1------>NtERF2    --------->CCA1(2)<------MYB83<--------   caaaaatgcaattttcctgaaaatttaggggtttaactcctgaaacgctgcgttttaatgctgtgatatgatattttcaagttggtttattctggcttgg  17883100                                                    ------>MYB46(1)                                     --------->ANAC58                                     --------->LBD16------>MYB83                                     --------->ANAC55(2)                                     --------->HSFB2a(2)                                     <---------HSFB2a(2)                                     --------->ANAC58                                     <---------ANAC55(2)                                    <---------LBD16 -------->P                     <---------CCA1(1)       <---------ANAC58                <----------DOF2  ---------->DOF2    <---------RVE1(1)       <---------ANAC58                <---------DAG2 -ANAC58            <---------ARR14(2)  --------->ARR14(2)            --------->AHL20(2) ---------DOF2      <---------ARR11(3)  <---------GLK1(2)          --------->TOE2(3) -ANAC58            --------->ARR11(3)  <---------ARR14(2)     --------->AHL20(2)                ---- -ANAC46            --------->ARR14(2)--------->LBD16     ------------>CBF<-----------GT1       <----   gcttttaagcccatttatgccagatatttgggtccagtcccggaatcgcttaccaacaagaacaatttaacttaaattacttttcgattttagttcttat  17883200                                                                                     ================                                                                                     <------ZmHOX2a(2)                                                                                    <---------ARR14(2)                      <---------ANAC46                                              --------->ARR14(2)                    <---------ZAT18                                             <---------LBD16 <------------CBF   ------>NtERF2 ------>ZmHOX2a(2)                           ----------->HVH21 ----->YAB1         --------->ZAT18----------->GT1        <------NtERF2<---------ANAC58             - -----YAB1<----------DOF2      --------->ATHB12    <---------AtLEC2    <---------ANAC58             -   gaaaattgagggcttttctcggtgccctagaattgatcggaaaaatgttttcttcatggcagagcaagggagtgcatgcttcgacggatcagaaaccaat  17883300                                                                           <------ZmHOX2a(2)        -                                                             ---------->ID1===================HOX2a_HOX2a                                                       <---------------AGL15------>ZmHOX2a(2)       <                                                --------->AHL20(2)        --------->ARR14(2)   ------                                                <---------AHL20(2)    <---------WOX13(1)    <--------           --------->YAB1                      <---------AHL20(2)   --------->ATHB12    ----------->HVH21 ======HOX2a_HOX2a                          --------->AHL20(2)     <---------YAB1      ------>ZmHOX2a(1) -------->LBD16--------->GLK1(2)           <---------YAB1<----------DOF2  <---------ARR14(2)--------- ----->ZmHOX2a(1)     <---------AHL20(2)<---------YAB1 --------------->AGL15==================HOX2a_HOX2a   tcctgaacaagtatgagaatttagtttatttcagtttttgttttgattatttatttgctctttgtagttttgattggatcccttgagtccttgacgctgc  17883400  Previous    Next  AGI:  At3g48250.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G02490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64240.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 17881049    to: 17882914    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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