Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->ANAC58                                        --------->ANAC46                                     ------->GAMYB                         --------->ANAC58 --------->ANAC58               --------->ALFIN1    --------->ZAT14            --------->DAG2       --------->ANAC46           ---------->DOF2  <---------WRKY38(1)                                    <----------DOF2         <---------------AGL15 --------->ANAC46                                 --------->ARR11(3)       --------->At4g35610 >>>>>>>>>>WRKY63            --------->CCA1(2)        <---------ARR11(3)  <---------At4g35610    --------->ANAC58 --------->ANAC46            --------->ATHB12   cttaagctaagctaaaagtggaacaacaagtcaacacaacacacacgactaaacaagagacaagtctttcgatgatttagaagttctttagggacatcaa  17848900                                           ------>MYB83                                 ---------->DOF2                          ----------->GT1  -------->P   <---------TOE2(3)                         <---------------AtSPL8        ---------->DOF2                       <-------                   --------->At4g35610     ------>MYB46(1)                                   <-------                   <---------At4g35610    ----------->RAV1(1)                            ------->MYC3                <---------At4g35610     --------->MYB46(3)         <----------DOF2       <-------MYC3   taccagagttttgttttgtgctgctaaatggtactaaaagaaaccaacaagaagcattaaagtttcttccttttagttaacattcaatacacatgggacc  17849000                                                   <-----------GT1                                                  <---------YAB1                                               --------->ICU4                       <---------ICU4                                             ----------->GT1                   --------->ARR11(3)                                          --------->YAB1                 ----------->GT1                                         <---------YAB1               <---------ARR14(2)                <----------DOF2       <------ZmHOX2a(2)               --------->GLK1(2)<-----------GT1        <---------ICU4               <---------ARR11(3)               --------->ARR14(2)    <--------        --------->YAB1               --------->ARR11(3)           --------->ANAC58 <---------YAB1 --PCF5<---------ATHB12          ---------->DOF2<---------ICU4    --------->ANAC58 --------->ICU4 --PCF2--------->ICU4   ---------->DOF2--------->YAB1      ---------->DOF2     <---------ARR11(3)   atcgtatcaatgatgagactttcagtgaaagatgagaaagatcataatagttattacaaaacaaagagacccaatctgtaatatcatgtttacctctcac  17849100                                                                <---------ICU4                                                                --------->YAB1                                                       <---------ICU4                                                       --------->YAB1                                                      <---------ATHB12                                                    --------->WOX13(1)                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                         --------->REM1(2)    --------->GLK1(2)                                        XXXXXXXXXXXXXXXXXXXX>MIR861-5P                   <---------YAB1      ------>ZmHOX2a(1) <---------YAB1           <---------ANAC58                  >>>>>>>>>>>>>>>>>LFY <XXXXXXXXXXXXXXXXXXXXMIR861-3P             <---------ANAC58            --------->YAB1             <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->ANAC58 ---HVH21 <---------TOE2(3)  ---------->DOF2    --------->GLK1(1)       --------->ANAC58   atcccaagtattaagaatagtaccattgtttgaaagaagtccttgaagacatatccatcatgagaatcattctcactcaaaaatgcttctcaagaagacg  17849200                                                                  ------------>CBF             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <-----------GT1             ---------            <xxxxxxxxxxxxxxxxsmallRNA(i)           *TSS--------->ICU4               ---------->DOF2          XXXXXXXXXXXXXXXXXXXX>MIR861-3P   --------->YAB1   <---------ARR11(3)--------->ANAC46        <XXXXXXXXXXXXXXXXXXXXMIR861-5P    <---------YAB1--------->YAB1    <-----------GT1   ---------     ----------->HVH21        <---------SPL7  <-------TEIL  <-----------ARR10 --------->ANAC58      -     --------->WRKY12   <------ZmHOX2a(1) <---------ATHB12  --------->ARR11(3)--------->ANAC58     --   gactccattgacgcatatttctccaaggacatcgttcgaaaacaatgatacatggtaatgaagattttaccaatttatacactccataaatcagccttaa  17849300                                  --------->At5g28300      ---------->DOF2            ----------->GT1     --------->AtMYB61   <------------CBF                                           --------->YAB1  --------->REM1(1)   ------------>CBF                                         --------->TOE2(3) >TOE1(3)    <---------ALFIN1  <---------At4g35610              <---------AtLEC2   <---------YAB1 >TOE2(3)   ------------>CBF   --------->At4g35610    <---------WOX13(1)      <---------ICU4 ----->ZmHOX2a(1) <---------AHL20(2)                --------->ATHB12          --------->YAB1      <-- ------->TOE1(3) --------->AHL20(2)               <----------DOF2      ----------->GT1        ------>ZmHOX2a(1)   tccttcaccaaagccccaattttatgcaattgaagctgtaaaatcgacagagcttgattgaattttgcatcactcgttaaacattatcaaaatttcctag  17849400                                                                       ------->PIF5                                                                       <-------PIF5                                                                       ------->PIF4                                                                       <-------MYC2                                                                       ------->MYC3                                                                       <-------MYC3                                                                       ------->MYC2                                                                       ------->MYC4                                                                      --------->ANAC55(2)                                                                      --------->ANAC58                                                                      --------->TGA1a                                                                      <---------TGA1a                                                                      <---------ANAC55(2)                                                                --------->At4g35610                                                            <-------MYC3                                                            ------->MYC3                                                           =====================bZIP_bZIP                                                           <---------ANAC46                                                           <---------ANAC55(2)                                                           --------->O2<-------MYC4                                                           <---------O2<-------PIF4                                                           <---------TGA1a                                              ==================================bZIP_DOF                                              =======================bZIP_DOF                                              <----------DOF2   <---------At4g35610                                              <---------------AGL15   ===============================                                              --------------->AGL15   --------->ANAC58                                             <-----------------AGL3   ----------->GT1                                       <---------AHL20(2)  --------->TGA1a ------->TEIL            ==                                 --------->ANAC58          --------->ANAC55(2)                     <-                                 ----------->GT1--------->AHL20(2)  <---------ALFIN1               <-            --------->CCA1(2)    --------->ANAC55(2)       ==========================================          <---------At4g35610    --------->ANAC58       <------ZmHOX2a(2)  <-----------ARR10    <---- -------ZAT14    ----------->GT1 <---------ANAC55(2)   --------->ARR11(3) <---------CCA1(2)   <------   ttctctgttttcagataagaggtaaaacgaagacgacgtaatttatagctttaaatagatcacgtgagcagcacgtgaatcttatctaaatctctcacac  17849500               ------->MYC2               ------->MYC3               <-------MYC2               <-------MYC3              <---------ANAC58              --------->O2              <---------ANAC46              <---------ANAC55(1)              <---------ANAC58              --------->ANAC55(2)              <---------ANAC55(2)    <---------ZAT14    <---------At4g35610  <---------AHL20(2)    --------->ZAT14      --------->AHL20(2) =========bZIP_DOF       <---------AHL20(1) =======================bZIP_DOF --------DAG2 <---------TGA1a              <---------ZAT6       ---------->DOF2 ---------DOF2<---------O2<---------AHL20(2)      <----------DOF2 =========bZIP_DOF <-----------GT1    --------->ANAC46     --------->ATHB12 -----ALFIN1  ===============================================bZIP_DOF ---ALFIN1    --------->TGA1a       <-----------GT1       <---------YAB1   actttctgctctgatcacgtgttacaattttttttttttcacgaagtgtaagctttatatatcattgaaaggaaccatacattggaatgccaaactcttg  17849600                                           ----------->GT1                                        <---------AtLEC2     --------->TOE2(3)                            <---------ARR14(2)            <---------ICU4                            --------->ARR14(2)            --------->YAB1                           <---------CCA1(2)        --------->TOE2(3)                         --------->ANAC55(2)      --------->GLK1(2)                         <---------ANAC55(2)      --------->ICU4    ----------->RAV1(1)  --------->ZAT6   tttagccaaacacatagctactcgattacatatctgtgatttgcattgtgaaattcttaataatctcaaaccacataagagagtagttcaaacactacat  17849700                                                                                         <---------ZAT6                                                                                         <---------ANAC46                                                                                      --------->ALFIN1                                                                                      <---------DEAR3(1)                                                                                      <---------AtMYB61                                                       -------->P                    <---------MYB52(1)                                                   --------->GLK1(2)             -------->P                                                   <-----------ARR10             --------->MYB52(1)                                                   --------->ARR11(3)           --------->MYB55(1)                                                   <---------ARR14(2)           ------->GAMYB                                                   --------->ARR14(2)          <---------MYB55(2)                 <---------ZAT2              ------->MYC3      <---------ANAC58<---------MYB111(2)                 <---------At4g35610         <-------MYC3      <---------ANAC58--------->MYB46(3)          <---------ZAT6           ---------->DOF2 <---------ARR11(3)          <---------MYB52(2)   gagataccaatagtgtttcagcttgttgttcttacgagaaaggggcacatgaaaatctaccataggcttgaaaacatttcaacaaccggtggtgttcaag  17849800  Previous    Next  AGI:  At3g48201.1    Description:  MIR861a; miRNA Range:  from: 17849120    to: 17849251    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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