Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->HSFB2a(2)                 <---------HSFB2a(2)             <---------ANAC58             <---------ANAC58                                                              <------ZmHOX2a(2)             <---------ANAC46                                                       --------->ATHB12        --------->HSFB2a(1)                                                        <---------YAB1       <---------TOE1(2)                             <------ZmHOX2a(2)             <---------AHL20(2)       <---------TOE2(2)                          <---------ANAC58              <---------ARR11(3)    ------>ZmHOX2a(2)     <---------YAB1---------->DOF2        <---------WOX13(1)--------->CCA1(2) ---------YAB1  --------->REM1(2) --------->ALFIN1<---------ANAC58              --------->ARR11(3)   ttttgatcgtatgttccttgtagaaattttgatgaagtgtttgaaagtgtttgcgatccatatagattgcccatcgatggaagatataattggatcatgt  17785700                    <---------------AtSPL8              <---------AHL20(2)                    --------------->AtSPL8          --------->CCA1(2)                <---------AHL20(2)                 --------->ARR11(3)        <---------ARR14(2)                         <---------ARR11(3)   ------>ZmHOX2a(2)        --------->ARR14(2)                 ===================================HOX2a_HOX2a        --------->ARR11(3)              <---------HSFB2a(2)            <------ZmHOX2a(2)        <---------ARR11(3)<---------MYB59  <------ZmHOX2a(1)          <---------ARR11(3)      --------->LBD16     --------->TOE2(3)====================================HOX2a_HOX2a         --  <-----------GT1  <---------YAB1       --------->HSFB2a(2)           --------->ARR11(3)        <----   tttttatccagatattagtttattagtacctaaaattttcttcgaggaagtaagatatatatatgtgattacgatcttatttccaaaaatccaagtattt  17785800                                                                      <------ZmHOX2a(2)                                                  <-----------GT1    --------->ARR11(3)                                                  --------->MYB52(1) <---------ARR11(3)                      --------->ANAC58    ----------->GT1      <---------ANAC55(2)                ---               <---------TOE2(3)         <---------TOE1(3)    <-------TEIL                      -----             ---------->DOF2       --------->ARR11(3)       --------->ARR14(2)                ------- ------->TOE2(3)      --------->ANAC58   <---------TOE2(3)  <---------ARR14(2)            <---------TOE2(3) -------GT1<------ZmHOX2a(2)       <---------ARR11(3)    <---------ANAC46                ---------->DOF2   tccataaaaacagatcaaaggtagaagcaaaatccaagatttcaaggttaaataacgagtcggatacataagatcaaatcccaaaccatgttaaagataa  17785900       <---------------AGL15       ------>ZmHOX2a(1)                                                              <---------AtLEC2       --------------->AGL15                                                       ------->PIF5 ------>ANAC46                                                                     <-------PIF5 ----- ----->DOF2               --------->DEAR3(2)              ----------->RAV1(2)     ----------->RAV1(2) -->CCA1(2) ---------->DOF2                               --------->At4g35610     --------->At4g35610   aagtcactcctacataaagaagaattgaaacgacgctcacttcttctcttcgttctcagcctctgaagccctcttcgctctagcacctgcatgtctcttc  17786000                          --------->ANAC58                      --------->ZAT2                          --------->ANAC58                      --------->At4g35610                          --------->ANAC46       <---------DEAR3(1)          --------->REM1(1)           <---------GLK1(1)  <----------DOF2    --------->ZAT18     <-----------GT1         --------->At4g35610   <---------ANAC58----------->GT1    --------->GLK1(1)  <---------DAG2             --------->ANAC58   <---------ANAC58<---------ZAT6   <------ZmHOX2a(1)  --------->At4g35610          --------->ANAC58 ---->ATHB12--------->ANAC46    ---------->DOF2 <---------At4g35610    <-----------RAV1(1)   attgtgcgtgctacacgaagagtgttatacgcctcaaaggatttcatttcagcggtgagctttacgagctccattgttggagtctcacgaacaataggca  17786100                                                                                                   <-                                                                                           <---------AHL20(2)                                                       ------------>CBF         --------->ANAC58   --                                                      --------->TOE2(3)         --------->ANAC46  <--                                                    --------->ARR11(3)          --------->ANAC58  ---                <-----------GT1                     <---------ARR11(3)        --------->MYB46(3)-----             *TSS  <---------DAG2  --------->YAB1  --------->RVE1(1)          ---------->DOF2  <-----           <----------DOF2      --------->GLK1(1)  --------->CCA1(1)      --------->MYB46(3)---------       --------->REM1(1)   ----------->GT1     --------->MYB46(3)--------->ANAC58          --------->AHL20(2)     <----------DOF2     ---------->DOF2     ----------->RAV1(1) --------->ANAC58      --------->AHL20(2)   tgtagtgcttcatctttttcacctttggaaagagaaatcatatgaggcaacaaatatctcaatgctcaagctaacatccaacaagcaaactaaataaata  17786200                                                                 <---------TOE2(3) --------ICU4        <------ZmHOX2a(2)                --------->MYB46(3) ------->YAB1      --------->At4g35610            <---------MYB52(2) -------YAB1  --------->YAB1                     <---------At4g35610             <---------HSFB2a(2) ------>ICU4  <---------ICU4                     --------->STY1(2)<---------REM1(1) ---->YAB1 --------->YAB1           --------->At4g35610------->GAMYB             --------->HSFB2a(2) ----AHL20(2)<---------YAB1       --------->MYB46(3)<---------DOF5.7(2)   <---------ZAT14      <----- >AHL20(2)<---------YAB1        ----------->RAV1(1) --------->MYB52(1) <---------ZAT6     --------->TOE2(3)   ataataactagtatcatcatcagatcaaacgaggcaacagcttaatgctctagctaacgaccaatttgatgtagagtttacttctacaaaaacctttgtt  17786300                               ------>MYB83                             ------->GAMYB                             --------->AtMYB61                            --------->MYB46(3)                            <---------MYB55(2)                           --------->ANAC58                           --------->ANAC58                           -------->P                          --------->WOX13(1)                             <---------GLK1(1)                   --------->ANAC46                             ------->TEIL                   --------->ANAC58                       --------->TOE2(2)    ---------->DOF2--------->ANAC58        <---------LBD16--------->TOE1(2)   ------>ZmHOX2a(1) ----MYB52(1)--------->MYB46(3)------>MYB46(1)  <---------KAN4(2)        --------->GLK1(1) --------->At4g35610   agtctctaaagcagaacaaacaaggaatcaaccaactcagaaaaactcggaatgaacaaaactacgaacttagagaattcctatccaagagctagcagaa  17786400                                                           --------->YAB1                                                           --------->AHL20(2)         ----------->RAV1(1)                                 <---------ANAC55(2)       <---------AHL20(2)      --------->ANAC58                                 --------->ANAC55(2)    ------>MYB46(1)            --------->ANAC58                                <-------TEIL            ------>MYB83             --------->CCA1(2)                       <----------DOF2                <---------MYB59           --------->ARR14(2) ---------->DOF2     ----------------->AGL1         ------->TEIL<-----------GT1 <---------ARR14(2)   cacaaaagaatgaactaatacatgcctttatcgatacgtcttaacaaaaaactgaacctaataatataacatacttactcaagataggcaacaagaagta  17786500                                         --------->At4g35610                                     --------->At4g35610                                     --------->ZAT2                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                              ------>ZmHOX2a(2)                             <------ZmHOX2a(2)                             =============HOX2a_HOX2a                             <---------GLK1(1)                            <---------ARR14(2)                            --------->ARR14(2)                            <---------ARR11(3)                                                     <-                            --------->ARR11(3)                                                     --                            --------->ARR14(3)                                                   xxxx                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                        ---------                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <--------                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <--------                    ------->TEIL<-----------RAV1(2)                                        xxxxxxxxxx                  ------->GAMYB <---------LBD16                                           --------->CCA1(2)                 <---------MYB52(2)<------ZmHOX2a(1)                           ------------>CBF  xxxx                 --------->MYB46(3)====================================HOX2a_HOX2a  <---------AHL20(2)         ------>ZmHOX2a(2)  <-----------ARR10   ----------->GT1       <---------AHL20(2)--------->YAB1         =================================HOX2a_HOX2a                --------->AHL20(2)<---------YAB1       <---------ARR11(3)   <---------AGP1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->AHL20(2)       --------->ARR11(3)   <---------ARR14(3)---------->DOF2   ------>ZmHOX2a(2)  xxxxxxxxxxxxxxxxxx   gagcaaatcgatcttcacaacgaacttcaagatctcaggagctagcagaaaagagaaaacacatgatcgcattaaatataaaacaatttatgatacgaga  17786600  Previous    Next  AGI:  At3g48120.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO64408.1) Range:  from: 17783042    to: 17785724    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g48130.1    Description:  60S ribosomal protein L13 (RPL13A), pseudogene, ribosomal protein L13 - Arabidopsis thaliana,PIR2:S37271; blastp match of 72% identity and 1.9e-15 P-value to SP|P41129|R132_BRANA 60S ribosomal protein L13-2 (Cold induced protein C24B). (Rape) {Brassica napus} Range:  from: 17785937    to: 17786113    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g48131.1    Description:  unknown protein Range:  from: 17786441    to: 17786572    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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