Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         ------>ZmHOX2a(1)                                                      --------->TOE2(3)                                                      --------->TOE1(3) ---->TOE2(3)             ---------->DOF2 --------->GLK1(2) -->GAMYB    --------->ANAC58         --------->HSFB2a(2) --->MYB46(3)--------->ANAC46         <---------HSFC1(1)               --------->ZAT6 ->P         --------->ANAC58         <---------HSFB2a(2)     ------->TEIL                      -----   tccatagataagaaccagcaagagaacataaagactaattcgagaaactgatatatcctaaacgaatttgttctcactaattttcaaatgtgttttcaac  17738500                                                                        <---------YAB1               --------->ATHB12                                      <---------YAB1             <----              <---------YAB1                                         --------->ICU4           -------           <---------YAB1                                          --------->YAB1      <---------GLK1(2)         --------->YAB1              --------------->AtSPL8      -------->P          <---------TOE2(3) ---->ANAC46--------->YAB1 <-----------GT1                ------>NtERF2<---------GLK1(2)--------->GLK1(2)   tccacaaacatttataatgaatggagtttctacaatctgaaggtactctctatatagctctgccatctaccatgattcttgagaattgagattctgtaaa  17738600                                                                                   <--------HAHB4                                                                                   --------->ATHB12                                                                                   --------->YAB1                                                                                   <---------ICU4              <---------ETT(1)--------->MYB46(3)                                  <---------ATHB12 --     --------->YAB1      ----------->GT1                                     <-----------GT1      <--   <---------ARR11(3)    <---------REM1(1)                           <---------ANAC55(2)          --- ------ID1   --------->DEAR3(2)            --------->AHL20(2)        --------->ANAC55(2)    ------->TEIL --->DOF2   --------->MYB52(1)<---------MYB52(2)                   --------->AHL20(2)      <---------GLK1(2)   gacaaaatcatacataccgacacagagttgtaacaaacaaacaaaaaaaatccacaaattgaatttcaattacatattttcacaatcatttctgaatctc  17738700              --------->ANAC58              --------->ANAC55(1)              --------->ANAC55(2)                                         ---------->DOF2              <---------ANAC55(2)                                      ----------->GT1       --------->ANAC46                                                <------MYB46(1)       --------->ANAC58               ----------->GT1                  <------MYB83       --------->ANAC58              <--------P                 ----------------->AGL1     --------->MYB52(1)          ------>ZmHOX2a(2)             <-----------------AGL1 ------->ATHB12  --------->MYB52(1)----------->GT1             <-----------------AG              ---- -------YAB1  --------->ANAC46 <---------ARR14(2)             <-----------GT1                -------- ------>ICU4  --------->ANAC58 --------->ARR14(2) --------->LBD16     --------->MYB59   --------->YAB1   atgattcaaacggaacaagtaactgtgtttagggatcgggtagataaaaacccagaaactaaaatcaccaatttggtaaagagaagcctataaacatctg  17738800                                                                                                  ---                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                      --------->ANAC46                                                                                 ------>ZmHOX2a(1)===                                                                                 ====================                           ====================HOX2a_HOX2a                       ----------->HVH21<--               <---------ANAC58                                                  ====================               <---------ANAC46                                                ----------->RAV1(2)---               <---------ANAC55(2)         ------------------------>ANAC81   <---------GLK1(1)    ===           --------->ARR11(3)           <------ZmHOX2a(1)                   <---------ARR14(2)    ---     ---------->DOF2       <------ZmHOX2a(2)                                --------->ARR14(2)   <--- ------>DOF2   <---------ANAC58   ---------->DOF2                 <------ZmHOX2a(1)<<<<<<<GRF7  <---- ->At4g35610   ----------->GT1--------->At4g35610        --------->MYB52(1)<------ZmHOX2a(1)    -----   aaagtccaaaagagatttcgtgaaatgagatcagaagaaagaggaaatgaagaagacacaaaccgagaggaacgagaggattcctgacacgcttcttctc  17738900        ------>ZmHOX2a(2)       <------ZmHOX2a(2)      <---------ARR14(2)      <---------ARR14(3)      --------->ARR11(3)      <---------ARR11(3)      --------->AGP1      --------->ARR14(2)      --------->ARR14(3)      <-----------ARR10      <---------GLK1(2)    ----------->ARR10 --->ZmHOX2a(1) ==============HOX2a_HOX2a =============HOX2a_HOX2a -------HSFB2a(2) ==============HOX2a_HOX2a ------>HSFB2a(2)                                                                       ============= =============HOX2a_HOX2a    ------>MYB46(1)   ------------>CBF                         ============= ------>LBD16                ------>MYB83<---------LBD16                   ------------------------>ANAC81 ------LBD16               <---------MYB59<---------HSFB2a(2) ---------->DOF2<----------ID1         - -----LBD16                <---------MYB46(2)  --------->MYB46(3)   <------ZmHOX2a(1)   ---------->DOF2 ------>RAV1(2)           --------->ANAC46--------->HSFB2a(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    -   ctggaacagatcttccatgtctggttctaccgaactcatcttctccagaaccaatgtcaaaaaccaaagaggaacaagaagaacaaaaaaaaaagagaaa  17739000                        <---------ANAC58                        <---------ANAC46                    ------->MYC3                   --------->O2                   <---------O2                   <---------TGA1a                   --------->TGA1a                   <---------ANAC58                 <---------ANAC55(2)                 --------->O2                 --------->ANAC58                 <---------ANAC46                 --------->TGA1a                                                          <---------ANAC46                 <---------TGA1a               ----------->HVH21                     --------->HSFB2a(1)                 <---------O2                  ----------->TGA1                      <---------MYB46(3)        ------->TEIL<-------MYC3              <-----------HVH21           <-----------HVH21    <-----     <---------ANAC55(2)<---------ANAC58     --------->ALFIN1   <---------HSFB2a(2)  --------->HSFC1(2)     <---------YAB1<---------ANAC58        <---------ANAC58     ----------->GT1      <---------HSFC1(2) ==========================bZIP_DOF--------->At4g35610          --------->HSFB2a(2) <---------TOE1(2) ============================bZIP_DOF      <---------ANAC58  <---------ARR14(2)  <---------DEAR3(1) ----->MYB46(1)  --------->ANAC58  <---------At4g35610       --------->ARR14(2)  <---------MYB46(3) < ----->MYB83 <-----------HVH21 <-----------HVH21           <---------DEAR3(2)<---------DEAR3(2)------   ccaaattatgtatgtagtcacgcgtggcctgttcgtcaccagagaccgtgtgacgacgagccggttctgtaaaacgagtcgggtcgatggttctgtgaat  17739100                                                                          --------->TGA2(2)                                                                         <-----------HVH21                                                                         <-----------TGA1                                                                        --------->O2                                                                        <---------TGA1a                                                                        --------->ANAC55(2)                                                                        <---------O2                                                                        --------->ANAC55(1)                                                                        --------->bZIP60(1)                                                                        --------->TGA1a                                                                        --------->ANAC58                                                                        --------->ANAC58                                                                        =============================            <---------ZAT6                                              --------->ANAC46            --------->ALFIN1                                            --------->bZIP60(2)        <-----------------AGL1                                          =============================       >>>>>>>>>>>>>>>>>LFY                    <---------ZAT14          <---------bZIP60(1)      --------->GLK1(2)                        --------->ZAT14        <---------DOF5.7(2)     <---------GLK1(2)                         <---------ZAT18       <-------TEIL    --------->At4g35610                        --------->ZAT18      <-----------HVH21    <---------At4g35610                       <<<<<<<<<<<<<<<<<LFY --------->TOE1(3) ----ARR14(2)         ----------->GT1        --------->ANAC46    <---------TOE1(3)             <----- -----------HVH21    ----------->GT1      <-------TEIL  <-------TEIL--------->DOF5.7(2)   --------->ARR14(2) --->ARR14(2)      <------------CBF     <---------ARR14(2)       <---------TOE2(3)        <---------ARR14(2)   cgggtcagattccagtgttggaattggaaaaaataacatttggatacagtccactgggttcacttctaacgttcacgtcagaaacagcatcaaatccgtt  17739200               --------->ANAC55(2)              <---------TOE2(3)              <---------TOE1(3)           --------->DOF5.7(2)    <----------DOF2                       ---------->ID1    <---------DAG2                    <----------DOF2                                             <--   <----------DOF2------->TEIL       <---------ANAC58                                             <--  ----------------->AGL1             <---------ANAC58                                      <--------- =============bZIP_DOF      --------->AHL20(2)                                       --------->YAB1 =============bZIP_DOF      <---------AHL20(2)        <---------DAG2            <---------YAB1 <----- ----MYB52(1)<---------DOF5.7(2)<---------ICU4        <----------DOF2  ----------->GT1     <---------DAG2   ttgggcctttttggttaacgtatttctcgtttaatttttgctttgtcttactgaaacttttttttgttttatactgaaaattttcatttatagctttatg  17739300        --------->MYB46(3)                                                        <---------ARR14(2)        <---------ATHB12                                                      <---------AHL20(2)       ------>MYB83                                                          --------->AHL20(2)       ------>MYB46(1)                           <-------TEIL            <---------AHL20(2)  <-----------GT1                       <---------YAB1                  --------->AHL20(2) -------DAG2                         --------->AHL20(1)                 <---------AHL20(2) --------DOF2   <-----------RAV1(1)  <---------AHL20(1)            --------->LBD16--------->ARR11(3) -DOF2 -------->P                    --------->AHL20(2)          ----------->RAV1(2) ----YAB1      <---------LBD16       <---------AHL20(2)          <---------LBD16  --------->GLK1(2)   ctttttgccaaccattctctgggggtttgtctctgcgaatttattaatgcatacatttttcgattacccctgaataaaatttaaaatctggatgatgagc  17739400  Previous    Next  AGI:  At3g48030.1    Description:  hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL3I (ATL3I) [Arabidopsis Thaliana] (GB:Q7X843;GB:Q9SU66); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G23980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64368.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80445.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Hypoxia induced protein conserved region (InterPro:IPR007667); contains InterPro domain Zinc finger, RING-type; (InterP Range:  from: 17736395    to: 17738939    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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