Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <------MYB46(1)                                                        <------MYB83                                                    <------NtERF2                                                   <<<<<<<<<AtERF-4                                                   <<<<<<<<<AtERF-3                                                   <<<<<<<<<AtERF-5                                                   ------>NtERF2                                                   <---------MYB46(3)                                                   <---------ERF1                                                   <<<<<<<<<AtERF-1                                                   <<<<<<<<<AtERF-2                                                   <---------RAP2.3(1)                                                  <---------RAP2.3(3)                                                  <---------RAP2.6(2)                                                  --------->ATERF1(2)                                                  <---------ATERF1(2)                                                  <---------RAP2.3(2)                                                  <---------ANAC46                                                  <---------DEAR3(1)                    <---------ARR14(2)                                                 <------NtERF2                       <---------ANAC46                                                 --------->RAP2.6(3)               --------->MYB52(1)                  <---------At4g35610            --------->ATERF1(1)               <---------DOF5.7(2)                  --------->At4g35610          <---------DEAR3(1)                 ----------->HVH21             --------->YAB1                    --------->ALFIN1                <---------TOE1(3)         --------->AHL20(2)                  --------->ALFIN1                  <---------TOE2(3)    -    <------ZmHOX2a(1)              <------ZmHOX2a(1)--------->ATERF1(1)    --------->CCA1(2)       <- --->AGL15 --------->AHL20(2)----------->RAV1(2)<---------ATERF1(1)       --------->ARR14(2)       <- ---->AGL1--------->YAB1    ------->TEIL <------ZmHOX2a(1)                <---------ARR14(2)    <----   gccctaggaaaataaaaataagctgaattgaacctgaggaagaggaagggtggcggctaggtcgatgacgaactcagatttgaggtaacggatagcgatt  17734600                                                                                                    -                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                             ========       <-------TEIL                                                                          ========    <---------DEAR3(2)                                                                   <------ZmHOX2a(1)    <---------MYB46(3)      --------->AtMYB61                                 --------->GLK1(2) -----   <---------DEAR3(1)   --------->ANAC46              ---------->DOF2     <------ZmHOX2a(1)  <------ZmHOX2a(1) -------->ANAC46 <---------ARR11(3)               --------->CCA1(2)       =========================== --------LBD16 --------->ANAC58            <---------ARR14(2)             =========================== --------At5g28300      --------->MYB46(3) --------->ARR14(2)<---------ARR14(2)          ============ -------HVH21  --------->ANAC58           <------ZmHOX2a(1)  --------->ARR14(2)          ============   tcacggcggtccataacaagctctccacgaccaaagactctagaggatttggatacaaaagcggttttgaatttgaggagaatgtggatgaggaaggaga  17734700               --------->ANAC58           <---------HSFB2a(2)           --------->HSFB2a(2)           <---------ANAC46          <---------LBD16      <------MYB83      <------MYB46(1)   <---------MYB52(1) ----->ZmHOX2a(2)                         --------->TGA1a -----ZmHOX2a(2)                          <---------TGA1a ------>ARR14(2)                         --------->SPL7 -------ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(i) ======HOX2a_HOX2a                  --------->MYB52(1)               <---------ANAC46 =====HOX2a_HOX2a           ---------->DOF2                        ------>NtERF2 ------>ARR10  --------->ANAC58    --------->ARR14(2)             <---------RAP2.6(2) ======HOX2a_HOX2a          ========================bZIP_DOF     <---------LBD16                    - =====HOX2a_HOX2a    ----------->HVH21   ------->TEIL          <---------ARR14(2)                   < =====HOX2a_HOX2a   ------->MYC3   <---------ARR14(2)          --------->ARR14(2)                  <- ======HOX2a_HOX2a  <-------MYC3  <---------RAP2.6(3)  <-------TEIL--------->LBD16    --------->CCA1(2)   gatcggctaggtttcggaagcatgtgacgaaaatgccgaaacggacgtcgatggacatacatgcggttccggcttggacaatggggagatagaagtagag  17734800                                                                  --------->ABI4(1)                                                                  ------>NtERF2                                                                 --------->ANAC46                                                                 --------->DREB2C(2)                                                                 --------->DEAR3(1)              <---                                                                --------->MYB46(3)               ----                                                               <---------ATERF1(1)           <-------                                                               <---------At5g28300           <-------                                                              <---------WRKY38(1)           ---------                                                              <---------WRKY12          --------->ANAC46                                 <------ZmHOX2a(1)          <-----------HVH21           --------->ANAC58                             --------->ICU4                <------MYB83                 --------->ANAC58      <------ZmHOX2a(1)   ----------->HVH21           --------->ATHB12                  --------->ANAC55(2)  ------>ZmHOX2a(2)      ------->MYC3                <---------YAB1 <-----------RAV1(2) <---------ANAC55(2)  =======================HOX2a_HOX2a               <---------ANAC55(2)                 <---------LBD16 -------->ARR14(2)       <-------MYC3              --------->ANAC55(2)              <-----------HVH21 ---------ARR14(2)   <------NtERF2       <---------MYB46(3)<------MYB46(1) ----------------------->TaNAC69(2) -----ZmHOX2a(1)  <------ZmHOX2a(1)     --------->ALFIN1  --------->MYB59 --------->ETT(2)  <--------   aggatcgaggaagagagcgaggaggcatgtgatgaggaaaatgtggttccatctcgtgattaggtcaccgccagggtcgagagttttgtcacggagcttg  17734900                       <-------GAMYB                      --------->MYB111(1)                      <---------MYB46(3)                      --------->MYB111(2)                      --------->MYB55(2)                    <---------ANAC58                    <-------GAMYB                    <---------ANAC58                    <---------ANAC46                   <---------MYB46(3)                   --------->MYB52(2)                   --------->MYB55(2)                   <------MYB83                                                         --------->ALFIN1                   <------MYB46(1)                                                      <---------ANAC46                  <---------AtMYB61       ----------->TGA1                              <---------REM1(1)               <---------DEAR3(1)         ----------->HVH21                          <---------DEAR3(1)               <---------ANAC46         <---------MYB46(3)                       --------->SPL7              <------NtERF2            <---------ANAC46                          <---------LBD16             ------>NtERF2             --------->ALFIN1                    --------->ARR14(2)            --------->ANAC46           <---------AtMYB61                   <---------ARR14(2) ------HSFB2a(2) <---------MYB52(1) <-----------RAV1(1)         <------NtERF2   --------->ALFIN1 ----->HSFB2a(2)<-------GAMYB       <---------AtMYB61          <---------HSFB2a(2)   <---------AtMYB61 --ANAC58   <---------DEAR3(1)      --------->ALFIN1           --------->HSFB2a(2) --------->LBD16  < --ANAC58------>ZmHOX2a(2)      <-------GAMYB<---------ANAC46 --------->ETT(1) <---------SPL7<------- >ZAT2   ----------->HVH21     <---------MYB46(3)             <---------LBD16 <---------ANAC58     <- -ZAT2 --------->ARR14(2)      --------->MYB52(2)             <---------ANAC46<---------ANAC58  -----   gagaagatggatcgacggcgttggttgttggggtcgttgtggtggtgacggagggagaatgttgtcgggaaattgcgaaaccgtgcggaggtgtagaggt  17735000                    <---------ANAC58                    <---------ANAC58<---------TOE2(3)                    --------->ANAC55(2)                    <---------ANAC46--------->HSFB2a(2)  <--------P        <---------ANAC55(1) <-------GAMYB   <--------P   --------------->AGL15 ---------MYB46(3)  <---------ANAC55(2)       ----------->ARR10                                  <--- --AtMYB61     <---------MYB46(3)   <---------HSFB2a(2)                                   <---------TOE2(3) --------AtMYB61<-------GAMYB <---------------AGL15                                ------------>CBF ---->ALFIN1<---------LBD16  <-----------------AGL1<-----------RAV1(1)      <------------CBF<------ZmHOX2a(1)   ggaggttgctcatttgggggttgcgtgtgtttcaagttatggaagggagagatttgtgggagtagaagaatgagaccatattggagacaattaaggagag  17735100                            <-------GAMYB                           <---------ANAC46                                                         -                      <---------ICU4                                                                <                      --------->AHL20(2)                                                            -                      <---------AHL20(2)  <---------AHL20(2)             --------->At4g35610        <                      --------->ATHB51--------->DAG2                     <---------At4g35610       --                     <---------AHL20(2)----------->GT1          --------->TOE2(3)         <---------ANAC46 ---ZmHOX2a(1) --------->YAB1        ---------->DOF2           <---------ICU4            ---------->ID1   gagagagcctgtgtctatgaaaaattatttcgttgatagaaaagttaattactgacaaatattaaacattagtttagctgattttgtttttgtcgtctaa  17735200          ---------->DOF2        <---------YAB1                                                         <------------CBF     --------->AHL20(1)                                                       <---------AHL20(2)     --------->AHL20(2)                                                       --------->ATHB12     <---------AHL20(2)                                                      --------->AHL20(2)    --------->AHL20(2)                                                       <---------AHL20(2)    <---------AHL20(2)                        --------->ANAC58               --------->AHL20(1) <---------AHL20(2)                           --------->ANAC46          <---------ATHB12 -------->AHL20(2)                       <---------YAB1                 ------------>CBF        <---- ---------AHL20(1)               ------->GAMYB--------->ANAC58    ------>ZmHOX2a(2)        <--------- -------->AHL20(1)            ----------->RAV1(1)                 ----------->GT1 <-----------GT1 ---------AHL20(2)            --------->MYB52(1)              <---------YAB1 <---------AHL20(1) <---- ------->AHL20(2)     ---------->DOF2----------->GT1  ---------->DOF2 --------->WOX13(1)  <---------TOE2(3)   aattaattttattaaagacacatacaaagaaacaacagagagtattatacgaaaacaaaagatgatgatcgtaaatcaatttattgactatttatgttgc  17735300                                                          <------MYB46(1)                                                          ----------->GT1                                                          <------MYB83                 <---------ARR11(3)                                                         <---------TOE2(3)   --------->YAB1                                                         --------->MYB59    <-------TEIL----------->GT1                                             <---------AHL20(2)         <---------AHL20(2)                                            --------->AHL20(2)         <---------AHL20(2)  ----------->GT1                           <---------AHL20(1)   --------->YAB1    ------>ZmHOX2a(2) -----ANAC58                   ------>ZmHOX2a(2)    <---------AHL20(2) --------->AHL20(2)       ----- --RAV1(1) --------->TOE2(3) --------->ARR11(3)     --------->AHL20(2) <---------AHL20(1)----------->GT1 -----ANAC58        ---------->DOF2         <---------AHL20(2)--------->KAN4(2)<---------YAB1 -------   tcgatggtcaaaaacttaatgaaaaagatgtgatctaggtatacaattttttttttaattaggttattcgtaataaaattcatgatcgagatgtttaaaa  17735400                                                               <---------WOX13(1)                                                              >>>>>>>>>ARR2                                                              >>>>>>>>>ARR1                                                             --------->YAB1                                                             --------->ATHB12             <---------ATHB12                                                   <---------bZIP60(2)                ------------>CBF                                                   <---------ANAC46                  ------>NtERF2                 <---------ANAC46                  <---------ANAC58                  <---------At4g35610               --------->REM1(2)                ----------->HVH21              <------------CBF ------>GT1   --------->ALFIN1          <---------ANAC46    <---------YAB1   <---------AHL20(2) --->DOF2   <---------ANAC46     <---------AHL20(2)<---------ANAC58         --------->AHL20(2)   gtaatttgaatattatgtgtaggggacaatacaatttttatgacttatatgtgacttggtctatgattgtttaaaatataaaattgcagccaatggtttg  17735500  Previous    Next  AGI:  At3g48010.1    Description:  ATCNGC16 (cyclic nucleotide gated channel 16); calmodulin binding / cyclic nucleotide binding / ion channel. Identical to Putative cyclic nucleotide-gated ion channel 16 (CNGC16) [Arabidopsis Thaliana] (GB:Q9SU64); similar to ATCNGC14 (cyclic nucleotide gated channel 14), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G24610.1); similar to ATCNGC17 (cyclic nucleotide gated channel 17), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G30360.1); similar to ATCNGC18/CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18), calmodulin binding / cyclic nucleotide bindin Range:  from: 17732320    to: 17735013    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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