Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            ===========================RAV          ==================RAV          ----------->RAV1(1)       ------>NtERF2     --------->ATERF1(1)     <------NtERF2     --------->At4g35610     <---------At4g35610    <---------RAP2.3(1)    <---------DEAR3(2)    <---------ATERF1(1)   <---------RAP2.6(2)   <---------DEAR3(1)   <---------DREB2C(2)   <---------RAP2.3(3)                                                                          -----   <---------RAP2.3(2)              --------->ANAC58                                 --------->GLK1(1)   --------->ETT(1)      ----------->RAV1(2)                                         <---------GLK1(1)  --------->RAP2.6(3)<---------ANAC58                                      ---------->DOF2     ------  --------->DDF1----------->RAV1(2) --------->ANAC58    --------->LBD16  ------>ZmHOX2a(1)     <----- <-----------HVH21   <---------ANAC58        --------->At4g35610        --------->TOE2(3)---------->DOF2   caatgtcggctccaacatacctggcctgcctgagagagaagcaaaatagctgcaaaccctgaaacaaaacacttcctcaaagcctggatttcaaagagat  17668900                                                                                         --------->ICU4                                                                                       --------->YAB1                                                                                     <-----------HVH21                                                                                    ------>ZmHOX2a(1)                                                                                  ----------->RAV1(2)                                                                               <------ZmHOX2a(2)                                                                               --------->GLK1(1)                                                                              <---------ARR14(2)                                                               ----------->HVH21------>ZmHOX2a(2)                                       <---------HSFC1(1)--------->ZAT14      <---------ARR11(3)                                ------->GAMYB            ----------->HVH21    --------->ARR11(3)                               --------->MYB46(3)    <---------ALFIN1         --------->ARR14(3)   --------->ANAC58            <---------MYB111(2) ----------->RAV1(1) ===============HOX2a_HOX2a   --------->ANAC46   <---------GLK1(2)--------->HSFB2a(2)    <-----------HVH21<---------GLK1(1)   --------->ANAC58   --------->ARR14(2)         <---------At4g35610   ================HOX2a_HOX2a ---->GLK1(2)         <---------ARR14(2)         --------->At4g35610   <------ZmHOX2a(1) <---------YAB1 --->ARR14(2)        <------ZmHOX2a(1) <---------HSFB2a(2)<---------WRKY18(1) <---------ARR14(3) ----GLK1(2)      <---------LBD16      --------->HSFC1(1)<---------ZAT14      --------->ARR14(2)   tctccaaggaacattttaactcaggattcttcaacaaccttctggaagaacagcagcacttgactgtgacagaggaatgagatctcctgtcataagtgaa  17669000                                                                          <---------GLK1(2)                                                                       ------>ZmHOX2a(2)                                                                      <------ZmHOX2a(2)                                                                      =============================HOX2a_HOX2a                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                     <-----------ARR10                                                                     <---------ARR11(3)                                                                     --------->GLK1(2)                                                                     <---------AGP1                                                                     --------->ARR11(3)                                                                    <------ZmHOX2a(1)                                                                    <---------GLK1(2)                                                                  --------->LBD16           =========                                                                 --------->HSFB2a(2)        ------>ZmHOX2a(1)                                     --------->GLK1(2)           <---------HSFB2a(2)    ---------->ID1                       <------ZmHOX2a(2)                         <---------LBD16    <----------DOF2            <---------GLK1(2)       <---------GLK1(2)<---------ARR11(3)============================HOX2a_HOX2a   accaagagaaaacagaatttctgagatcagtaaaccaagaatctctataatccaagatagttccattccaggatctgattctgtaactttgttcctaaac  17669100                     ----------->GT1                                                    --------->ALFIN1                    <---------TOE2(3)                                                  ------->PIF5                    <---------TOE1(3)                                                  <-------PIF5                ------>ZmHOX2a(2)                                                     --------->ZAT2              <---------ARR11(3)                                                      --------->At4g35610              --------->ARR11(3)                                                    <-----------RAV1(2)             --------->YAB1                                                        --------->At4g35610           <---------TOE2(3)                                                       <---------At4g35610         <---------AHL20(2)                                                        <---------ZAT2  <-         --------->AHL20(2)                                                        --------->ZAT2----        <---------AHL20(2)                   <---------YAB1                        <------NtERF2 <---        --------->AHL20(2)      <---------At4g35610            --------->AtMYB61 <-----------RAV1(2) ======================HOX2a_HOX2a   <---------ATHB12       <-----------GT1   --------->ALFIN1  -----   ctataactaaattaatgatcttgaggttaatcggagctaatgaagttgtgattcaaaacataaaaccataccttgttgaagtggcagcaggtggagagaa  17669200                                                   <---------ARR11(3)                                                   --------->ARR11(3)                                                  <---------CCA1(2)         --------->GLK1(2)                      --------->YAB1  <---------HSFB2a(2)                          <---------YAB1  --------->HSFB2a(2)                         --------->ARR11(3) ---------DOF2                                <---------ARR11(3)                     ----------->RAV1(1) ----->HSFC1(2)                            --------->YAB1                           <------NtERF2 ------HSFC1(2)              --------->ZAT6<---------ICU4   <----------DOF2   <---------AtMYB61 ---->GLK1(2)            <---------ANAC46  --------->AHL20(2)              <----------DOF2  <--------   gctttgagaagaaactggtcttgagaggcttatactactacttaataatatcatatctctctctttctctctcacttcttttggtcgccacagactttta  17669300                             <---------CCA1(1)                             <---------RVE1(1)                            --------->ARR11(3)                            <---------ARR11(3)                       <------MYB46(1)                                                            <--                       <------MYB83              <-----------HVH21                          <-------- *TSS                <--------P            <-----------GT1                           <---------ZAT6 <----------DOF2     --------->ALFIN1    <----------DOF2                ----------->GT1 <---------ZAT14 --DOF2       ----------->HVH21    <----------DOF2             <<<<<<<<<TAC1   --------->GLK1(2) <---   tgtctttttttaagtgttgacaggttgggagatatttctttctctttaccttgtcacagaaaaacactgtcgttttgaaaaattctagtgtatagtatta  17669400                                                    --------->DOF5.7(2)                                                   --------->TOE2(3)                                                   --------->TOE1(3)                                                  --------->ANAC46                           <---------YAB1     <-----------HVH21                        <---------YAB1       <----------DOF2   ----------->GT1            <---------ARR14(2)              <---------DAG2   --------->O2            --------->ARR14(2)           <---------ALFIN1    <---------ANAC58              ------>MYB46(1)   <---------ZAT6 <---------TOE2(3)      --------->REM1(1)   <---------O2                  ------>MYB83 ----ZmHOX2a(1)  <-----------GT1      <---------ANAC58       <---------ANAC58             <---------CCA1(2) -ZAT6      <---------ARR11(3)        <---------ANAC58       --------->ANAC55(2)   ----------->HVH21 ------YAB1 --------->ARR11(3)   <---------AtLEC2<---------TOE1(3)         --------->AHL20(2)--------   ggatagtattaggggatattaacgatgtgattagtgcatggcttcacctttcacgttaactagacgtgttattcgaataaaacatttgacacctatctca  17669500          --------->ARR11(3)          <---------ARR11(3)          --------->AHL20(1)          <---------AHL20(1)          <---------AHL20(2)                                                          <---------AHL20(2)         --------->AHL20(2)                                                           --------->AHL20(2)     --------->AHL20(2)                                                          --------->AHL20(2)     <---------AHL20(2)                            <---------ANAC46              <---------AHL20(1)     --------->AHL20(1)                          <---------YAB1           ----------->HVH21      ---- ->TOE2(3)--------->AHL20(2)                 ------->TEIL      --------->AHL20(2)<---------AHL20(2) -   aaacaaataaaatatattgaatagtttcagtgttttttttttctatgaattttgagtgaatttcataaattttgttctgacattttattttaatatcaag  17669600                                                    --------->AHL20(2)                                                    <---------AHL20(2)                                                --------->AHL20(2)                                                <---------AHL20(2)             <---------ARR11(3)                 --------->AHL20(1)         ---------->DOF2                       <---------AHL20(2)     --------->At4g35610    <----------DOF2    --------->AHL20(2)           ----------->GT1 ---------  <---------YAB1  <---------TOE2(3)           --------->AHL20(2)            <---------ZAT6  <xxxxxxxx ----->YAB1  --------->ARR11(3)         <-----------GT1                   ----------->GT1--------->TOE2(3) -------->YAB1--------->CCA1(2)<---------YAB1 <---------AHL20(1)  ---------->DOF2      <---------YAB1   aattatcatctaaaagatttaagtttttgacttttgattttttaacaaaataatttaaatgcaaaattcaaagaaatagtgtaaatgttttcattaacag  17669700                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     --------->ANAC58                                                     --------->ANAC58                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                 <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 xxxxxxxxxxxxxxx>smallRNA(le3)                                                 ------>NtERF2                                                 <---------RAP2.6(3)                                                <---------ETT(1)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                --------->RAP2.3(3)                                                --------->DEAR3(1)                                               --------->DEAR3(2)                                               <------NtERF2                                               --------->RAP2.3(1)                                               --------->ATERF1(1)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              ------>NtERF2                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                           <------MYB46(1)xxxxxxxxxxxxxxxx>smallRNA(i)                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                           <------MYB83------->GAMYB                                          <---------MYB46(3)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                         <---------WOX13(1)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                       --------->ATHB12<xxxxxxxxxxxxxxxxsmallRNA(i)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      <---------YAB1<xxxxxxxxxxxxxxxxsmallRNA(s)                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <xxxxxx                                     <xxxxxxxxxxxxxxxxsmallRNA(s)                            xxxxxxxx                                    xxxxxxxxxxxxxxxx>smallRNA(i)                             xxxxxxxx                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxx                                   xxxxxxxxxxxxxxxx>smallRNA(i)                             xxxxxxxxx                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      xxxxxxxxx                                 xxxxxxxxxxxxxxxx>smallRNA(i)                               ---------                                 xxxxxxxxxxxxxxxx>smallRNA(s)                              xxxxxxxxxx                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------ATHB12                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                       <xxxxxxxxxx                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      xxxxxxxxxxx                                <---------ANAC46--------->ATERF1(2)                       xxxxxxxxxxx                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                            ------>MYB83                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          ------>MYB46(1)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxx                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxx                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <------MYB83            xxxxxxxxxxxxx                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------MYB46(1)        xxxxxxxxxxxxxx                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->MYB59         xxxxxxxxxxxxxx                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxx                      <---------HSFB2a(2)xxxxxxxxxxxxxxxx>smallRNA(i)            --------->ZAT14                      --------->HSFB2a(2)<xxxxxxxxxxxxxxxxsmallRNA(s)          <---------ZAT14xxxxxxx                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i)     <---------MYB59                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->MYB46(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxx               <---------DAG2  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(i)               <----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) >MYB52(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->MYB46(3)  <-----------GT1 xxxxxxxxxxxxxx xxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(i)  <xxx   ataatttgaagtcgacgctttattctggacaatgaagtgtatgattggtgccgacaaccaagaagtaggtttttcacagactgttcagacctaatgaaga  17669800  Previous    Next  AGI:  At3g47860.1    Description:  apolipoprotein D-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO38997.1); contains InterPro domain Lipocalin; (InterPro:IPR002345); contains InterPro domain Lipocalin-related protein and Bos/Can/Equ allergen; (InterPro:IPR000566); contains InterPro domain Calycin-like (InterPro:IPR011038); contains InterPro domain Calycin; (InterPro:IPR012674) Range:  from: 17667655    to: 17669301    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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