Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ARR11(3)                                               <---------ARR11(3)                                             <---------ARR11(3)                                             <---------AHL20(1)                                             --------->ARR11(3)                                             --------->AHL20(1)                                    <-   <---------ARR11(3)                <---------ZAT18                                   <---------TOE2(3)   --------->ARR11(3)           <---------AHL20(2)                    <---------AHL20(2)  --------->CCA1(2) -------->DOF2       --------->CCA1(2)      --------->AHL20(2)        --------->AHL20(2) --------->ARR14(2) -----ID1 --------->AtLEC2      <---------YAB1<---------CCA1(2) --------->AHL20(2)     ----------->ARR10 --DOF5.7(2)      <---------TOE2(3)  --------->ZAT18 --------->AHL20(2)       <-----------GT1      --   acaaagatgttcttgcaaataagataagcgtttttttattgcacaaatatatctataaattttagataaaatataaattcttacccattgagatttgcat  17601300                                                                              <-----------GT1                                                                             --------->AHL20(2)                               <---------DOF5.7(2)                          <---------AHL20(2)                               ---------->DOF2                           <---------AHL20(2)                             --------->DOF5.7(2)                        <---------AHL20(1)                            --------->TOE2(3)                           <---------AHL20(2)                            --------->TOE1(3)                           --------->AHL20(2)         --                        <----------DOF2                                <---------ATHB12         <----                    <-----------GT1                       ----------->GT1--------->AHL20(2)  <------- ----------GT1      ---------->ID1               ----------->GT1     --------->WOX13(1)     --------- ------->ZAT6      <-----------GT1               <---------ZAT6  <-----------GT1            <--------   aatactattcagagtgttttttttccctttcgttaaagactactagtcagagtgttaatctagtaattcaccaattaatttaactatacttaaaaatatt  17601400                                                <---------YAB1                                                <---------AHL20(2)                                             --------->AHL20(2)                                             --------->AHL20(1)                                             <---------AHL20(1)      <---------TOE2(3)                      <---------AHL20(2)                          <---------ARR11(3) ------------->AGL15                        --------->AHL20(2)                           --------->GLK1(2) -------GT1                                 --------->YAB1                               --------->ARR11(3) --ICU4 <------ZmHOX2a(1)              ------------>CBF          <-------MYC3    ----------->GT1 >AHL20(1)                      <---------AHL20(2)               ------->MYC3 --------->MYB52(1)   <- -AHL20(1)                      --------->AHL20(2)      --------->AtLEC2 ----------------->AGL1  ----   acagtttttaggaaacatgctagaaaaaacatatataattttgcaattatattattccatgcatacacatgtagagccaaaaacggagaaaaatcttcta  17601500                                                                                                -----                                             --------->ZAT14                                    -----                                             <---------ZAT18                                ---------                          <---------AHL20(2) <---------ZAT14                                ---------   --------->ANAC46 --------->YAB1         <---------At4g35610                             <---------YAB1 --------AHL20(2)  <---------ATHB12  --------->At4g35610         ------------>CBF        --------->YAB1 ------->TBP <-----------GT1  <---------AHL20(2)      <---------ALFIN1         <----------DOF2  <----   tataaacacaagttgaaaccattcatgtttattttaagcagttgcagtagactcttccacttctgtattcaattcttccttcttttttctcttataatat  17601600                                             <---------AHL20(2)                                          ----------->GT1                                         <---------TOE1(3) ---->AHL20(2)                           <---------TOE2(3)     <---------ARR11(3) ------>TBP                             ---------->DOF2        --------->ARR11(3) >AHL20(2)  --------->AHL20(2)      --------->ATHB12   ------->TEIL                                 < >YAB1  ---------->DOF2            --------->ICU4    --------->ZAT14                        <-------- -----AHL20(2)                     <---------YAB1    <---------ZAT18----------->TBP --------->ANAC46-   aaataacatacaaagaaaatacttgcactcacaaatattgattaaagttaattagtgaaccctaagatttataaatctctagctatactctaccatatca  17601700                                                                                             <-------TEIL                                                                                          --------->ZAT2                                                                                          <---------At4g35610                                                                                      ------>ZmHOX2a(1)                                                                                   ---------->ID1                                                           --------->ANAC58    ------>ZmHOX2a(2)                                                           --------->ANAC55(2) ==============HOX2a_HOX2a                                                           --------->ANAC58   <------ZmHOX2a(2)      --------->ANAC55(2)                                  <---------ANAC55(2)===============HOX2a_HOX2a      <---------ANAC55(2)                                 <---------LBD16    --------->ARR11(3)     <    <-----------GT1                                   --------->YAB1         <---------ARR11(3) <---- ---------AHL20(1)                                    <---------ICU4        ------->GAMYB --------->At4g35610 -CCA1(2)<---------ICU4                       <---------At4g35610        --------->MYB52(1) <-------- -------->AHL20(1)             <-------TEIL   --------->At4g35610      <---------ATHB12   <---------ZAT2   tatatattacataatgtctagcagaaaatcacgttcaagacaaactggagcttccatgatcacggatgaacaaatcaacgatcttgtcctccagcttcat  17601800                                                                                                <----                                                                                              ------>ZmHOX2a(1)                                                                                      --------->AHL20(2)                                     <---------------AtSPL8                           <---------AHL20(2)                                     --------------->AtSPL3                          <---------AHL20(1)        --------->LBD16            ---------->DOF2                 <---------YAB1    --------->AHL20(1)       --------->LBD16  ------->GAMYB--------->DAG2              --------->YAB1      --------->AHL20(2)       --------->HSFB2a(2)      <---------HSFB2a(2)              <---------ICU4      <---------AHL20(2)      <---------LBD16  --------->MYB46(3)                       --------->ICU4   <---------AHL20(2) ---------GLK1(2)    ----------->RAV1(1) <-------TEIL         --------->YAB1     <---------AHL20(1) -----At4g35610     --------->MYB46(3)----------->GT1       <-----------GT1      --------->AHL20(2) --DOF2<---------HSFB2a(2)      --------->HSFB2a(2)  <---------ATHB12     <----------DOF2 <----------   cggcttctccccgaacttgctaacaacagacgctctggaaaggtacaacgttctaatcaatttttcattatgattccttttaaaaaatttaatttcctct  17601900                                      <---------TOE1(2)                                    <---------ANAC58                                          -------                                    <---------ANAC46          <----------ID1                  <------                                    <---------ANAC58       ---------->DOF2                  ---------         <---------ARR11(3)   <---------ARR11(3)   <------MYB46(1)                          ---------         --------->ARR11(3)   --------->ARR11(3)   <------MYB83                            --------->YAB1    --------->TOE2(3)        <---------CCA1(2)    --------------->AtSPL8                --------->YAB1    --------->TOE1(3) --------->TOE2(3)           <---------------AtSPL8  --------->LBD16--------->AHL20(2) ------DOF2 <----------DOF2<---------AHL20(2)     <---------MYB46(3)    <---------LBD16--------->AHL20(2) -GT1   <---------CCA1(2)  --------->AHL20(2)    <---------ANAC46--------->MYB46(3)--------->AHL20(2)   ttcaaaccttaaatcttttctaaacctttttaaatcttccttggattagtagtgggtacttaaaagaacaaacctccggtttaaaaaaaataaaaataat  17602000                  ---------->DOF2        <---------ARR14(2)                                  --------->TOE1(2)    <---------AHL20(1)                                     --------->MYB46(3)    --------->AHL20(1)   <-----------GT1          <---------MYB46(3)                        --------- -->YAB1--------->ARR14(2)                        <-----------RAV1(1)                    --------->AHL20(2) ---ICU4--------->ARR11(3)       --------->ICU4<-----------RAV1(1)     <----------DOF2   <---------AHL20(2) >AHL20(2)  ------>ZmHOX2a(1)--------->At5g28300<-------GAMYB--------->MYB52(1)      <---------YAB1 >AHL20(1) --------->ANAC46--------->ZAT6  <----------DOF2 <---------MYB52(2)      --------->YAB1   aactaatatatatcctccatcaaagtttaacagtaattctttcatctttctgttgttgcaaacaaacgagagtctttagttagaattataaataaatatt  17602100                                                                        ----------->GT1                                                                   <---------O2 --------->AHL20(2)                          <---------ANAC46                         <---------ANAC58                          <---------ANAC58                         <---------ANAC58                          <---------ANAC58                         <---------bZIP60(2)                          <---------AtLEC2      >>>>>>>>>ARR2      <---------TGA1a            <---------ARR14(2)            --------->ATHB12         <---------ANAC46            <---------ARR11(3)           <-------TEIL           ----------->HVH21<---------AHL20(2)            --------->ARR14(2)       --------->ICU4       ------->TEIL <---------ZAT6<-----------GT1 >ICU4     <---------CCA1(2)   ------->TEIL   <---------YAB1    ----------->TGA1<---------AHL20(2)   aaactaatattccatatattccaatattgcatgtatgtattgattcatttgattgtgatgcattttgtgacgagtgctaaattttaatttccaaactaat  17602200  Previous    Next  AGI:  At3g47710.1    Description:  bHLH family protein. similar to bHLH family protein [Arabidopsis thaliana] (TAIR:AT1G74500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62531.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 17601714    to: 17602440    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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