Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->LBD16                                                                                      --------->DEAR3(1)     --------->bZIP60(1)                                                           <---------ALFIN1     <---------bZIP60(1)                   ---------->ID1                          --------->ANAC46   --------->YAB1          <---------AHL20(2)                               --------->ARR11(3)    <-- ----------DOF2            --------->AHL20(2)                  <-----------GT1    --------->MYB46(3)- -->DOF2                  --------->ICU4  <-----------HVH21 --------->YAB1  <---------ARR11(3)------- -AHL20(2)                <---------AHL20(2)        <---------AHL20(2)     <---------CCA1(2)  <------   cgctatgatgtcaatttcaaatactgaaattattttcaaaactttgtcacttatattatcacttataaccattctatatatcttcccaccgcgaaattta  17523900      <----------DOF2      <---------DAG2   <---------ALFIN1 ------->GAMYB                                                          ----------->GT1   <---------AHL20(1) ---------GT1                                                          <---------TOE2(3)  <---------AHL20(2) -------->MYB46(3)                            <---------YAB1        --------->AHL20(1)    --------->AHL20(2) -->AHL20(2)                                ----------->GT1        --------->YAB1         --------->AHL20(1) ---AHL20(2)                                --------->YAB1 ----------->GT1     <-----------GT1  -----   taaccacacttttacaaactaaatttcatacattttccaaatagtattgtaataaacaaaatagtttaaaaataatgtaatttacaaaacaataaatttt  17524000                                <---------MYB46(3)                               <---------WOX13(1)                           --------->ANAC58                               <--------P                                   --------->ANAC46                              <-------GAMYB                                 --------->ANAC58        <        --------->ARR11(3)   <---------MYB46(3)                        <---------At4g35610 <---------ARR11(3) ---->AHL20(2)    --------->At4g35610      ---------->DOF2             --------->At4g35610 --------->ARR11(3)   taatataaaacatattgatcagcaaaaatgctggttgatgcataaaaaagactcaactacagaagaaatattcagcacacgatatcacaagaagaactcg  17524100                                                          --------->ANAC58                                                          --------->ANAC58                                                         --------->SPL7                                                         --------->SPL1(2)                                                        --------->SPL1(1)                                                        <---------SPL1(1)                          ==                                                     --------------->AtSPL3                        ==                                                     <---------------AtSPL3                        --                                                    <------------------SPL14                      ---                                                   <---------MYB46(3)                             ---                                                 <---------ANAC58                                ----                                                 <---------ANAC58                               <----                                                <---------MYB46(3)                             <-----                                             <---------MYB52(1)                                ------                                         ------->TEIL<---------------AtSPL8                    <-----                                      --------->ANAC46 <---------SPL7                        <-------                                      --------->ANAC58<---------ANAC58                      <--------                                      --------->ANAC58<---------ANAC58                      <--------               ------->PIF5    ----------->GT1  <------MYB83                                <--------               --------->LBD16<---------TOE1(3) <------MYB46(1)             <---------HSFC1(2)-------      ---------->DOF2<------NtERF2---------->DOF2<-------GAMYB--------->ZAT6--------->HSFC1(2)<------NtERF2 ----------ID1 <-------PIF5   <---------TOE2(3)<---------AtMYB61      ---------->DOF2      <---------LBD16   atgagacaaaaagagcccgtggcatcgatattaaggtaaaacgcatcgtttggttgtcgtacggacactactaaaagacgcttctcacctcttggcggat  17524200                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                    --------->CCA1(2)          ------->GAMYB--------->At4g35610          --------->AtMYB61          <---------MYB59 --------->ANAC46  <---------ARR11(3) ==========================HOX2a_HOX2a ===========================HOX2a_HOX2a ---->ZmHOX2a(1)   <-----------ARR10 ------>TOE1(2)    <---------AGP1 ------>TOE2(2)    --------->ARR14(2) -->ZmHOX2a(2)     <---------ARR14(2) --ZmHOX2a(2)      --------->AGP1 ----ARR14(2)      --------->ARR11(3)                                                     <---------ARR11(3) --->ARR14(2)     <---------CCA1(2)                                                <---------AHL20(2) ------ARR10------>MYB46(1)                                                       --------->AHL20(2) --MYB46(3) ------>MYB83                                                          <---------AHL20(2) -ANAC46 --------->MYB46(3)                                                   <---------AHL20(2) -ANAC58--------->ANAC58              <----------DOF2                  <----------DOF2    --------->ARR11(3) -ANAC58--------->ANAC58             <---------DAG2        --------->ICU4     <---------YAB1       -- -->ATERF1(1)    ----------->ARR10<-----------GT1          *TSS        <---------DAG2   <---------TOE2(3)   cctacgagacaaccaaacacagatctgcttccttcttcacctttttttttttttttttgtaattttggtttccctttttttttattaaataagatttatt  17524300            ------>MYB83            ------>MYB46(1)          <---------MYB46(2)          <---------MYB59         <---------ANAC55(2)         --------->ANAC55(2)      --------->DOF5.7(2)            <----------DOF2      <---------MYB52(1)           --------->At4g35610                                      <--------    <---------ICU4                 <---------At4g35610                          ------>ZmHOX2a(1) ---->ZmHOX2a(1)          ---------->ID1              ------->TEIL              --------->LBD16   cctccatcgttacctaatccccttcttcgtcttcttcagcttcactgagtcttacgaacatagcaaaatccaaatcaaattcctgaagaaacctctttcg  17524400                                                                               --------->At4g35610                                                                               <---------At4g35610                            ----------->ARR10                                  ----------->RAV1(2)                       <---------TOE2(3)                                     <-----------GT1                 <------ZmHOX2a(2)                       <<<<<<<<<TBF1    <---------GLK1(1)                --------->AGP1<---------GLK1(2)      <-----------GT1      --------->GLK1(1)               --------->At4g35610               <----------DOF2        <------ZmHOX2a(1)           - --DOF2        <---------At4g35610           <---------CCA1(2)        <---------TOE2(3)             -   ctctcgtcttcgttttcagatcaacaaggttagattctcaacttctcgtttcttttttcttcttcatagatttaggatttcacctgagtctcgtttgaaa  17524500                         <---------ANAC58                         --------->ANAC46                         <---------ANAC58                                                        ----                         <---------ANAC55(2)                                                    <----              ------>ZmHOX2a(2)                                             <---------GLK1(1)   -----            <---------ARR14(2)                                       <---------MYB52(1)       <------            <---------AGP1                                         <---------ANAC58          <-------            --------->ARR14(2)           <---------TOE1(3)         <---------ANAC58          ------>ZmHOX2a(1) -------->TOE2(2)        --------->ANAC55(2)                    <---------ARR14(2)       ------->TEIL -------->TOE1(2)      <-----------GT1   <---------TOE2(3)      --------->ARR14(2)    <---------YAB1   aacctatgaaattcgatctggttttttacgtctctcgtcgattagggtttctaatttgtttcatcgtttccgttttcgatttctgaatatgaatccttta  17524600                                                         <---------GLK1(2)                                                        --------->At4g35610       ---------->DOF2                                  <---------At4g35610 ----->ANAC55(2)                                   --------->REM1(1)                               -- -----TOE2(3)                                    ----------->RAV1(1)                               <- ---->MYB59              ----------->GT1      ------->GAMYB                        --------->At4g35610 ---MYB52(1)             <---------ANAC55(2)--------->At4g35610                    <---------At4g35610 ---DOF2                 <---------ANAC46  ----------->RAV1(1)         <---------At4g35610  ---------   ggtatctaataaagttttatatatgttatgtgaaaacagaaatggcaacagcaacatcagcttctctgttttcaactgtttcttcatcttactccaaagc  17524700                                                                                                 ----                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                                         ============                                                                                        =============                                                                                        <---------At4g35610                                                                                        <------ZmHOX2a(2)                                                                                        =============                                                                                       --------->GLK1(2)                                                                                       <---------ARR11(3)                                                                                       <-----------ARR10                                                                                       <---------AGP1                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                                                                      <---------CCA1(2)                                                                                --------->At4g35610      --------->SPL7                                                  -------->P<---------At4g35610 ------->At4g35610                                                    ------->TEIL    <---------ARR14(1) --------ZAT2                                                        <-----------GT1 --------->LBD16 ->DOF2                    ----------->GT1                         <---------ATHB12<---------LBD16   tagctccataccacattcaagactccaatctgtgaaattcaactcagtccctagcttcaccggtctcaaatcaacctctctcatctccggatctgattcc  17524800  Previous    Next  AGI:  At3g47520.1    Description:  MDH (MALATE DEHYDROGENASE); malate dehydrogenase. Identical to Malate dehydrogenase, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SN86;GB:O81844); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G09660.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to NAD-malate dehydrogenase [Nicotiana tabacum] (GB:CAB45387.1); contains InterPro domain Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; (InterPro:IPR015955); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains I Range:  from: 17524259    to: 17526026    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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