Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------ANAC46                            <-----------HVH21        <---------ZAT6                             --------->LBD16    <-------GAMYB                                 <---------ATERF1(2)    <---------MYB52(1)                            --------->ATERF1(2)   --------->LBD16                                <---------DEAR3(1)  <---------ANAC46                              ------>MYB46(1)               --------->LBD16 <---------LBD16                                --------->MYB52(1)           <---------LBD16 --------ARR14(2)                               ------>MYB83              <---------ARR14(2) ------->ARR14(2)                              ----------->HVH21       ----------------->AGL1 ---MYB46(1)                                   --------->MYB55(1)      <-----------------AGL1 ---MYB83                                    ----------->RAV1(2)      ------>NtERF2 --------->MYB46(3) ------DEAR3(2)                              <---------ANAC58      <---------ATERF1(1)       <------- ------MYB46(3)                              <---------ANAC58 <-----------RAV1(2)   <---------ATHB12- ---P   ----------->GT1                 <---------ICU4 ----------->ARR10<---------------AGL15--------   ggttccggttgtgttaaaccgaaattgaatgtagtttgcaaaacattacctgccggtgagataatcaggcgatgccaaaccgggcaaccattctcctttc  17505600                                                                                --------->MYB52(1)                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                             ----------->ARR10                                                                         --------->HSFB2a(2)                                                                        <---------LBD16                                                                       -------->P                                                                       ------>MYB83  --------->ALFIN1                                                                       ------>MYB46(1)                                                                       --------->MYB52(1)                                                                      --------->MYB55(1)                  ------>NtERF2                                      <---------MYB46(2)                 --------->DEAR3(1)                                  <---------MYB59<-----------HVH21        --------->TOE1(3)               <------ZmHOX2a(2)   <------NtERF2<---------HSFB2a(2)       XXXXXXXXXXXXXXXXXXXX>MIR4228 --------->DEAR3(2)     <---------LBD16--------->LBD16 ---DOF2--------->TOE2(3)          ------->TEIL        --------->O2  <---------MYB55(2)            <- -------->At4g35610           <---------At4g35610 <----------ID1     --------->AtMYB61     --------->GLK1(2) ------------->WRI1           --------->At4g35610 --------->ANAC46   <---------MYB111(1) <------ZmHOX2a(1)   ttagcttcaaccttgaacgacgacgttttggccgatgaaccgatcgatgtaaacgacaagtcgcggttcaacctaccggaagaaccggtgaggaatcttg  17505700                                                                                              <------                                                                                              -------                                                                                             --------                                                                                             --------                                                                                          --------->GLK1(2)                                                                               ------>ZmHOX2a(2)                                                                              --------->CCA1(2)                                                                              --------->ARR14(1)                                                                              <------ZmHOX2a(2)                                                                             --------->ARR14(2)                                                                             <---------ARR11(3)                                                                             --------->ARR11(1)                                                                             <---------ARR14(2)                                                                            <---------HSFB2a(1)                                                                            <---------GLK1(1)--------                                                                           ----------->ARR10<--------                                           <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ARR14(2)                             <------NtERF2<---------ZAT6       <---------STY1(2)<---------ETT(1)<----               ----------->GT1            ----------->HVH21    --------->STY1(2)----------->HVH21   <---------------AtSPL8 ------>NtERF2  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ARR11(3)<----- ---------DOF2--------->ETT(1)     --------->ICU4     --------->ICU4<---------ZAT6    --------->LBD16   gctttgaagtacaaggtcggaaaatcgaggccgaggcatgagtagtgacagtagccattatccctagctagacttagaagatccgacccgagaacccggc  17505800     >>>>>>>>>TBF1 -----HVH21 -->LBD16 ->ANAC46 ->ANAC58                                           <-------GAMYB ->ANAC58                                          <---------MYB46(3)                               < -LBD16                                    --------->ZAT14                     <---------ARR14(2)   < -----ALFIN1                               <---------ZAT14 ----------->GT1     --------->ARR14(2)   < -NtERF2                         ---------->DOF2  <---------AtMYB61       <---------ANAC46       <---   acttgaagaagaatggattggaatcaagagagattgaaagatgagttcagagatggttgtgaagaaataagacttggaggggattttgtaagtttattcg  17505900                                                                       ----------->HVH21                                                                   --------->ATHB12                                                                 <---------WOX13(1)                                                                <-------GAMYB                                                               <---------MYB46(3)                                                            <---------ANAC46                                                            <---------ANAC58                                                            <---------bZIP60(1)                                                            <---------ANAC55(2)                                                            ============MYC_MYB                                                            <---------ANAC55(1)                                                            --------->ANAC55(2)                                                            <---------ANAC58                                                            <---------TGA1a                                                            <---------O2                                               <---------MYB52(1)<--------P                                              <-------GAMYB --------->O2                                           -------->P  --------->At4g35610                                           <---------At5g28300--------->ALFIN1                                       --------->ARR14(2)   --------->bZIP60(1)                                       <-----------ARR10    <---------bZIP60(2)                                       --------->ARR11(3)  ----------->STF1              <-----------RAV1(1)      <---------ARR11(3) <---------TGA2(2)                        -- ---------ANAC58              <---------YAB1  ========================MYC_MYB        <------MYB46(1)< ---------ANAC46       <---------MYB46(3)  ===========================MYC_MYB        <------MYB83 --- ---------ANAC58      <---------AtMYB61<---------ARR14(2)----------->HVH21     <------ZmHOX2a(1)  <-- ------MYB52(1) <---------RAP2.6(2)    --------->GLK1(2) ----------->TGA1<---------LBD16       <-----   tttcttgaaacgagttttgtggctgtggtttgatgactgagtatctaccgttggattagatgacgtggttgatttgacggaggagattggtttgagagga  17506000                                                                                                    <                                                                                                    <                                        --------->ARR14(2)                                          -                                        <---------ARR11(3)                             <------------CBF                                        <---------ARR14(2)                       <---------DEAR3(2) -                                       <------ZmHOX2a(1)                         <---------MYB46(3) -                             ------->TEIL                                       <---------ANAC58    -                             <-----------ARR10                         <---------YAB1<-------TEIL   <     <---------ANAC58        --------->ARR14(2)             <---------AtMYB61   <---------ANAC58   --     <---------ANAC58        <---------ARR14(2)           <------------CBF      <---------ANAC46   -- ------->CCA1(2)             <---------ARR11(1)         <---------TOE2(3)     <-----------HVH21    <- -------TEIL                <---------ARR14(1) <-----------RAV1(1)     <---------TOE2(3)           <- ------>ARR14(2)            <---------CCA1(2) <---------TOE2(3) --------->ETT(1)--------->ETT(1)   -- -------ARR14(2)          <---------ANAC58 --------->AHL20(2)<------MYB46(1) <-----------RAV1(1)   <- -ZmHOX2a(1)      *TSS    <---------ANAC58 <---------AHL20(2)<------MYB83--------->ARR11(3)        --   gatacaggcttatcggtttatcttcgaagcgtatcttaagaggattttaatgttgtttgagattggtcggaataagatagtgtcgggtccattgttgtta  17506100         <---------AHL20(2)        --------->AHL20(2)        <---------AHL20(2)     --------->WOX13(1)   ------------>CBF  <-----------HVH21 -------MYC2 -------MYC4                                             <---------ATHB12 ------->ABF1                             --------->ARR14(2) ------>MYC4                       <---------ANAC46     ------>MYB46(1) ------>MYC2                       <---------ANAC58     ------>MYB83 ------>MYC3                       <---------ANAC58    --------->WOX13(1) -------MYC3                     --------->ZAT18    --------->ANAC58 ------->ANAC46                  --------->ZAT14    --------->ANAC58 ------->ANAC55(2)               <---------ZAT14   --------->WOX13(1) --------ANAC55(2)              --------->ALFIN1<-----------HVH21                                ---- --------TGA1a         <---------AHL20(1) <---------GLK1(2)                                  <------- ------->O2            --------->AHL20(1) <---------ARR14(2)                   ------->MYC3  -------- --------O2       <---------AHL20(2)     <------ZmHOX2a(1)--------->YAB1       <-------MYC3  -------- ------->TGA1a    --------->AHL20(2) --------->ALFIN1--------->MYB46(3)    <XXXXXXXXXXXXXXXXXXXXMIR774   cacgtgtcaattaaatggatttaaaaatattagagtggagtgaggattctcgtcaaccaatcaaatggaactgaattggcatatgggaaaccaaaaatct  17506200                        --------->CCA1(2)                       <---------ARR14(2)                     <---------YAB1                --------->YAB1                <---------ICU4             ----------->GT1                                      <----        <-----------GT1--------->ARR14(2)<---------ANAC46                                       <---- ------>DOF2   --------->ICU4          ------->TEIL                                       <----------DOF2 --ARR11(3)    <---------ATHB12    ------->TEIL                                     --------->YAB1 ->GLK1(2)  ------>ZmHOX2a(1)   --------->ALFIN1                                  --------->ARR11(3) ->ARR11(3)<---------MYB59    <---------ANAC46                                    <---------ARR11(3)   aaagtctgattttcctaatcatcaagataggggagtgtatgtaacttgtaaaacataaaaccaatttggatttatctaaaaaactatcttcactttgggc  17506300                <---------LBD16            <-----------ARR10                 <---------MYB46(3)            --------->ARR14(2)               <--------P           <---------GLK1(2)                <-------GAMYB   <---------TOE2(3)                  --------->CCA1(2)   <---------TOE1(3)                 <---------ARR11(3)                                 --------->ARR11(3) -----ANAC58--------->GLK1(2)        --------->ARR11(3)                 ---------->DOF2 <---------ARR11(3) -----ANAC58<---------ARR14(2)     ----------->ARR10             ---------->DOF2--------->ALFIN1   ttgtcaaggttgagaatctcgggctcgtttgaagagtgagatattgggttgttttaggcccaagaagaaaagaagaaagagagtgttgaagaacttaaat  17506400                                           --------->YAB1                             <------ZmHOX2a(2)              <---------At5g28300 <---------DAG2        <----------DOF2     --------->ARR11(3) --------->ARR11(3)            <-----------GT1        --------->TOE2(3)   <---------ARR11(3) --------->GLK1(2)----------->HVH21<----------DOF2   <-  <----------DOF2  <----------DOF2 <-------TEIL<---------ARR11(3)        <---------TOE2(3) <---------MYB52(1)   ccatctttttctttaatctctctttttcaagatcatgttcatctttcaaaatcttacagagttacagtgacatttgagattaccttttaaactgttaact  17506500  Previous    Next  AGI:  At3g47470.1    Description:  LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding. Identical to Chlorophyll a-b binding protein 4, chloroplast precursor (CAB4) [Arabidopsis Thaliana] (GB:P27521); similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G61470.1); similar to chlorophyll a/b binding protein [Solanum tuberosum] (GB:CAK24966.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) Range:  from: 17504357    to: 17506018    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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