Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                          <-----------HVH21     <----                                                                         =========================MYC_MYB                                                                         <---------TGA1a      -------                                                                         --------->TGA1a      <------                                                                         --------->O2        --------                                                                         <---------O2        <-------                                                 ------>MYB46(1)    --------->ARR14(2)       --------           --------->GLK1(2)                     ------>MYB83       --------->GLK1(2)        <-------          <---------GLK1(2)                 <-----------GT1    --------->LBD16               <-------        ----------->ARR10                --------->ANAC55(2)  --------->LBD16                -------- ->GAMYB<---------TOE2(3)                --------->ANAC46    <---------LBD16                <-------- ------MYB.PH3(2)                        --------->ANAC58 --------->ARR14(2)                --------- ---MYB46(2)                             --------->ANAC58 <---------ARR14(2)              ------->GAMYB ---MYB52(2)                         --------->YAB1 <----------ID1  <---------ARR14(2) --------->MYB52(1)   actcaaaattgagattctcaagctcgaattcataccaattcataagtaaccaaatcgacaaatcccggagaatcgacgtcggaagtttgtaacggagctc  17496900    <---------RAP2.6(3)    --------->At5g28300   --------->ANAC46   ----------->GT1   --------->RAP2.6(2) ------>NtERF2 --------->At4g35610 <---------At4g35610 -------->DEAR3(1) ------->ERF1 -------At4g35610 ------>At4g35610 ------>LBD16 ----->ANAC46 -----LBD16                                   <---------ICU4 -->ARR14(2)                                  --------->YAB1 ---ARR14(2)                                 <---------ATHB12 ->GLK1(1)                                   --------->ICU4 --At4g35610                            --------->AtLEC2                             <----------DOF2 ->At4g35610                           --------->LBD16            <<<<<<<<<TBF1   ------>ZmHOX2a(2) --GLK1(1)                            <---------ANAC58     <----------DOF2      --------->ARR11(3) --ZAT2                               <---------ANAC46    <------------------------ANAC81 ->ZAT2                           <----------DOF2    ------>ZmHOX2a(1)    <----------DOF2        <--- ---ARR10                     --------->MYB46(3)     ====================================HOX2a_HOX2a -->ARR10            <---------TOE2(3)<---------ANAC58 <----------DOF2    <---------DAG2         <---   cgcagccgtaacaacatgagactgaggtatcaacaactttccgtgcaataatctcctctttctttttcttcttctcctttttgatctctttcttcactac  17497000                                                             --------->LBD16                                                             <------NtERF2                                                            --------->RRTF1(3)                                                            --------->RAP2.3(3)                                                            --------->RRTF1(2)                                                            --------->RAP2.6(2)                                                            --------->DEAR3(1)                                                           --------->RRTF1(1)                                                           --------->RAP2.3(1)                                                           --------->ATERF1(1)                                                           --------->ERF1                                                           <------NtERF2                                                          --------->At4g35610                                                          <---------ATERF1(1)                                                          ------>NtERF2                                                         --------->RAP2.3(2)                                                         --------->RAP2.6(2)                                                         --------->ANAC46                                                         <---------ATERF1(2)                                                         --------->ATERF1(2)                                                         --------->RAP2.3(3)                                                        --------->RAP2.6(1)                                                        --------->ERF1                                                        --------->RAP2.3(1)                                                        --------->ATERF1(1)                                                        --------->DEAR3(2)                                                        --------->MYB46(3)                                                       --------->ZAT2                                                       <---------At4g35610                                                       --------->At4g35610                                                       <---------ATERF1(1)                                 <---------HSFB2a(1)  --------->DEAR3(1)                               <---------ARR14(2)    --------->ATERF1(1)                               --------->ARR14(2)   --------->At4g35610                    <---------MYB46(3)              --------->ZAT2                    <---------DEAR3(2)           <------MYB46(1) <---------ARR14(2)                    <------MYB83 --------->HSFB2a(1)<---------At4g35610                    <------MYB46(1)              <------MYB83------>NtERF2                   <---------TOE1(2)            --------->ALFIN1 --------->ARR14(2)             -----       <-------TEIL<---------TOE2(2)     <---------LBD16--------->RRTF1(1)                      <----    <---------At4g35610     --------->LBD16  <---------MYB46(3) --------->GLK1(1)            <-------    --------->At4g35610    <---------LBD16--------->LBD16--------->DEAR3(1)                 <-------- ------DAG2       <---------MYB52(1)     <-----------RAV1(2)--------->RAP2.3(2)   ----------->GT1 -------DOF2     <-------GAMYB<------ZmHOX2a(1)<--------P------->GAMYB         --------->LBD16<------   tttctgagcttcatgagctcgttggttctccaggaacctttctccaggggttggagcagccgccgcaaatccatctcgttccgagagtgaaactggtggt  17497100                                                                     --------->ANAC58                                                                     <---------O2         <---------ANAC46                                                                     --------->O2 <---------ANAC58                                                                     --------->TGA1a      <---------O2                                                                     =================MYC_MYB                                                                     --------->ANAC58    <------NtERF2                                                                     <---------TGA1a--------->ALFIN1                                                         ----------->ARR10        <---------ANAC58                                          <---------TOE2(3)    <---------ANAC58   <---------ANAC46                                   <---------TOE1(2)  --------->At5g28300         <-----------RAV1(1)                                  <------NtERF2     <---------DEAR3(1)            --------->ALFIN1 ---->ARR14(2)                  <---------ANAC46    <---------ANAC46 --------->ANAC55(2)------>NtERF2 -----ARR14(2)                  --------->ETT(2)  --------->MYB52(1) --------->ANAC46  <---------ANAC46 --AtMYB61               <---------WOX13(1) --------->At5g28300<---------ANAC58<---------MYB52(1) -MYB52(1)    <---------WOX13(1)<---------ANAC58 ----------->TGA1  <---------DOF5.7(2) ----------->HVH21 ---MYB46(3)--------->ATHB12    <---------ANAC58 ----------->HVH21<-------TEIL<-------GAMYB   <------ZmHOX2a(1)   tctgaattagctattgatttacagacgattgatgtcgtcggattacggtaaatgacggtgagattgggttcacgtctcgtcgttgtgtggcgacgaggaa  17497200                                                              <-------GAMYB                                                             --------->MYB52(2)                                                      <---------MYB46(3)                                                    <---------At4g35610                                                    --------->At4g35610                                                    <---------ZAT2                                                    --------->ZAT2                                              ------>ZmHOX2a(1)---------->ID1                                          <-----------GT1    <---------MYB46(3)                                      <---------ARR11(3)   <---------ANAC46                                      --------->ARR11(3)<---------MYB52(1)                <---------ZAT6      ----------->ARR10 <-----------RAV1(1)                --------->ALFIN1 <---------ANAC46 --------->MYB46(3)   gagaaggaaacgttgagagtgttcgtagcgccattgctgagatttttcctcaccagctgttgtttgttgttatgttatctattaaacccagagagagaac  17497300                                                                          --------->LBD16                                                                         --------->LBD16                                                                  <-----------GT1                                                                 <---------CCA1(2)                                                                ----------->ARR10                                                             --------->At5g28300                   <X                                                   <------------CBF      --------->ANAC46       -----                                                   <---------ANAC46     <---------LBD16         <----                                                  --------->ATHB12--------->ARR14(2)      <---------ARR14(2)                                        ------->TEIL<---------WOX13(1)------>NtERF2       --------->ARR14(2)                                       <---------ARR14(2)    <-------GAMYB<------NtERF2 --------->LBD16                                ---------->DOF2   <---------MYB46(3) --------->ANAC46  --------->ANAC46                              --------->ANAC46  <---------WOX13(1)<---------ARR14(2)  <---------LBD16                          <-----------GT1       <--------P  ----------->GT1          --------->MYB52(1)                <---------ZAT14 *TSS   --------->ARR14(2)------------>MYB.PH3(1)    --------->MYB52(1)   aagagagactctaactggtacagaggttttactcgaaagaagaacctctggttgattggagacggttatatccgcccgggacaaaataaccggaatcgaa  17497400               ----------------->AGL3             <---------ARR14(2)             --------->ARR14(2)          --------->DEAR3(2)         ------->TEIL                                             <---------CCA1(2) --------->ANAC58                                                 ------>MYB83 --------->ANAC46                                                 ------>MYB46(1) --------->LBD16                                                <---------MYB111(1) --------->ANAC58       <---------TOE2(3)                       <---------MYB59            ---------- XXXXXXXXXXXXXXXXXXXMIR869.1                           <----------DOF2                 ---------->DOF2 ---->ARR14(2) ====================================================================================== -----ARR14(2)<------ZmHOX2a(2)                      <----------DOF2                --------->YAB1  <   tacccgaaatgaaccgatccaaaattagggtatagattagaaattcagtttcccgctcttttgctaccaaatctcagaaggcccaattttaaagagaaaa  17497500                    ----------->GT1             <------MYB83             ----------->GT1             <------MYB46(1)                                --------->YAB1            --------->MYB59        <----------ID1          --------->ICU4        <---------AHL20(2)         ----------->GT1       --------->YAB1       <---------AHL20(2) ---------->DOF2           <---------ANAC58      --------------->AGL15 <----------ID1          <---------ANAC58                       <-------TEIL ->GT1<---------------AGL15 ----------->GT1    --------->ARR14(2)------>ZmHOX2a(1)       <---------ARR14(2) =====================MADS_MADS  ---------->DOF2    <---------ANAC46              <---------MYB52(1) ---------YAB1     ------------------------>ANAC81  <---------AtLEC2 ---------->DOF2     --------->ARR14(2)   ttatgtttttttatttggtaaattgaaaaaaagaaaaaagaaaaattcaaatttgcttgtaataatcctctcaaagagaattcagttagacgattcgtct  17497600                                                                             <---------------AGL15                                                                             --------------->AGL15                                                                            ----------------->AGL3                                                                            <-----------------AGL2                   --------->ARR11(3)                                       =========================                   <---------GLK1(2)                                     <---------GLK1(1)                 ----------->ARR10               <---------ANAC58<---------ANAC58               <---------MYB52(1)                <---------ANAC58<---------ANAC58             <---------MYB46(3)     ------------>CBF    <---------YAB1   --------->GLK1(1)          ------------>AtMYB77 --------->ANAC46 <---------HSFC1(2) <---------MYB52(1)       ------>ZmHOX2a(1)  <-----------ARR10     --------->HSFC1(2) ----------->RAV1(2)     ----------->RAV1(2)  ------->TEIL    <---------LBD16        <---------ANAC46              <-----   ctacttctcctgcaacggttagattttgaatctacgctctcaatttcggaagcttgttgtgatacttccgtctgggtttccatttctagggtttatgggg  17497700                                                                         <------MYB46(1)                                                                         ----------->GT1                                                                         <------MYB83                                                                  <---------AtLEC2                                                                  <---------ANAC58                                                                  <---------ANAC58        --------->MYB52(1)                        <---------LBD16                         <---------YAB1         --------->ANAC55(1)              ----------->GT1                                 --------->CCA1(2)        --------->ANAC58      <---------------AGL15                                   --------->GLK1(1)        --------->ANAC55(2)      --------------->AGL15                                  --------->ARR11(3)        <---------ANAC55(2)     <-----------------AGL3                                  <---------ARR11(3)        --------->ANAC58     ----------------->AGL3                <---------------------WRI1    --------->HSFB2a(1)     <-----------------AG                 ---------->DOF2    --------->ARR14(2)        --------->ANAC46     <-----------------AGL2            ----------->RAV1(1) ----------->ARR10       --------->YAB1 =====================MADS_MADS       <----------ID1  ---------->DOF2    <---------HSFB2a(1)    <---- ----ANAC46  <---------TOE2(3) >>>>>>>>>TBF1    <-------TEIL <---------ARR14(2)   <---------ATHB12   tttagtttctaaattagggtaaaatttggggaagaagaagacaacaaagatgcatataaaggagatatgcttggaaggtttcaaatcatacgcaacgagg  17497800  Previous    Next  AGI:  At3g47450.1    Description:  ATNOA1/ATNOS1/NOA1/NOS1 (NO ASSOCIATED 1); nitric-oxide synthase. Identical to Nitric oxide synthase 1 (NOS1) [Arabidopsis Thaliana] (GB:Q66GP9;GB:Q9STX8); similar to GTP binding [Arabidopsis thaliana] (TAIR:AT3G57180.1); similar to hypothetical protein OsI_005334 [Oryza sativa (indica cultivar-group)] (GB:EAY84101.1); similar to nitric oxide associated 1 [Nicotiana benthamiana] (GB:BAF93184.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42714.1); contains domain SSF52540 (SSF52540); contains domain PTHR11089 (PTHR11089); contains domain PTHR11089:SF3 (PTHR11089:SF3); contains domain G3DSA:3.40.50.300 (G3DSA:3.40.50.300) Range:  from: 17494053    to: 17497332    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g47460.1    Description:  ATSMC2 (Arabidopsis thaliana structural maintenance of chromosome 2). Identical to Structural maintenance of chromosomes protein 2-2 (SMC2-2) [Arabidopsis Thaliana] (GB:Q9SN90;GB:Q9STX7); similar to SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) [Arabidopsis thaliana] (TAIR:AT5G62410.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN68529.1); similar to SMC2 protein [Oryza sativa] (GB:CAD59410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42737.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:IPR003395); contains InterP Range:  from: 17497750    to: 17504380    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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