Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->TOE2(3)                                                                            <-------TEIL                                                                          --------->AGP1                                                                          --------->ARR11(3)                                                                          <---------ARR11(3)                                                                   <---------ICU4                                                                   -------->ATHB1                                                                   -------->HAHB4                                                                   --------->ATHB51        <---------YAB1                                                                   --------->YAB1       <---------WOX13(1)                             <---------ARR11(3)                    <---------AHL20(2)  <---------ANAC58                             --------->ARR11(3)                    <--------HAHB4      <---------ANAC58               ----------->GT1                                    --------->ICU4      --------->ATHB12              --------->DAG2 <---------ARR14(2)                   <---------ATHB51   <---------YAB1        ----------->GT1 <---------YAB1                            <---------YAB1  --------->ICU4 ----->ZmHOX2a(2)    --------->ICU4                        <---------ATHB12<------ZmHOX2a(2)        < -------ARR11(3) --------->AHL20(2)                    --------->MYB46(3) --------->ARR14(2)     <--- ---AtLEC2   ---------->DOF2 --------->ARR14(2)      --------->ANAC46     <---------ARR14(2)  <------   gatccatacattgtgaaaagtaaattatgaagatttgtcaactatctgaaaatacaaaccaatgcttaattattaagatccataatgttgattgttatta  17472700                           --------->AtLEC2                         <---------AtLEC2                                                   ---------                    <---------AHL20(2)                                                      <--------  <---------AtMYB61--------->AHL20(2)                                                       --------- ----------DOF2    <---------AHL20(2)                                                       <-------- ------YAB1    <---------AHL20(2)                                                    <-----------GT1- ---YAB1      --------->AHL20(2)                                              <---------ANAC46    ---   tgctttggttcttatataaaatttttttcatgaaaatggaagtttaaacaatgtgttataggcacaactatggcctagttgtggatttaacgagtgcact  17472800      --------->ATHB12      <---------ICU4      --------->YAB1     <---------YAB1 <----------DOF2 <---------DAG2             <---------AHL20(2) >ZAT14       <---------MYB52(1)                         <---------ANAC46 -ZAT18      <-------GAMYB<---------YAB1            <---------ICU4    ----------->GT1 >ZAT18      <---------RAP2.6(3) ---------->DOF2    --------->YAB1   ----------->GT1 -ZAT14<------------CBF<---------YAB1              --------->ICU4--------->ZAT14 -------->TOE2(3)    ----------->GT1             --------->YAB1--------->ANAC46      <------MYB83---- ----->P    ----------->GT1--------->AHL20(2)  --------->AHL20(2)<---------ZAT14     <------MYB46(1)   tacctttatcattgccgttaaatttgttattatatgaaagaaaactcaaaataataatgtcttatactaaactgataaaaaaacatttggtatgggtttg  17472900                                                       <---------ARR11(3)                                             <---------ANAC55(2)                                       <---------TOE2(3)                                    --------->ARR11(3) --------->ARR11(3)                               --------->ANAC58        <---------GLK1(2) <---------ARR14(2)                               --------->ANAC58   --------->YAB1         --------->ARR14(2)         <------ZmHOX2a(2)     --------->ANAC46  <---------YAB1 <------------CBF ------->HVH21           --------->WRKY38(1) <---------ANAC46 <---------YAB1           <----------DOF2   tgacagaatggatcaaatccctcatcgttgatcacgcagataatgttatgtataatagatttttcttattgggcctatatgggcttcttctttatgtctc  17473000                                                                  <---------GLK1(2)                                                        --------->MYB59                      <----------DOF2            <-----------------AG            <------------CBF       <----------DOF2   <---------GLK1(2)            <----------DOF2         <-----------GT1       <----------DOF2   <-----------------AGL1 ------------>CBF   atgagcccaaataacattgcataacttttaaaactttcttttcttcgtttgcacagattaggcaaatcgattctctcaatggctctttcatttcgaattt  17473100                                                                                                <----                                                                                             <------NtERF2                                                                                            ---------                                                                                            ---------                                                                                            ------>NtERF2                                                                                            <--------                                                                                           --------->ATERF1(2)                                                                                           --------->RAP2.3(2)                                                                                           --------->RRTF1(3)                                                                                           <---------ATERF1(2)                                                                                           --------->DEAR3(1)                                                                                           --------->RAP2.3(3)                                                                                          --------->RAP2.3(1)                                                                                          --------->RAP2.6(1)                                                                                          --------->RRTF1(1)                                                               --------->ANAC46           --------->ATERF1(1)                                                               --------->ANAC58           --------->ORA47(2)                                                               ========================bZIP_DOF -----                                                           --------->AtMYB61              --------->DEAR4(2)                                                           <---------ALFIN1               <------NtERF2                                                         -------->P                       --------->ERF1                                                         ================MYC_MYB          --------->DEAR3(2)                                                       <---------MYB46(2)                <---------ATERF1(1)                                                       <---------MYB111(2)               ------>NtERF2                                                  --------->YAB1        <---------RAP2.6(2)<---------DEAR3(1)                      <---------ARR14(2)          ----------->GT1   --------->At4g35610 --------->ANAC58                      --------->ARR14(2)       ------->GAMYB   --------->TGA1a          --------->ANAC58                  <---------ZAT14              ==========================MYC_MYB        <---------DEAR3(1)                  --------->ZAT14             --------->MYB46(3)    <---------At4g35610 --------->ANAC46           <---------MYB52(1)             <------NtERF2<---------MYB52(2)              <---------ABI4(2)          <-------GAMYB            --------->MYB52(1)  <---------MYB111(1)  <----------DOF2--------->RRTF1(2)     --------->ATERF1(1)   <---------ALFIN1 ----------->RAV1(1)--------->ANAC58    ----------->HVH21    <---------ATERF1(1)  <---------ALFIN1------>NtERF2 --------->MYB46(3) ------>NtERF2------>NtERF2  ---------->ID1  --------->At4g35610    ----------->RAV1(1) --------->ANAC46      --------->ANAC46   cttcgtcgtctccgttaatctgcagagccactctctcaaacggcgacaacagtcgtaactaccacacgactgatgccgcttttatccgacgcgccgccga  17473200                                                                                         --------->ARR11(3)                                                                                         <---------ARR11(3)                                                                               --------->LBD16                                                                              --------->DEAR3(1)                                                                             <------NtERF2<----------                                             <---------DEAR3(1)              <---------LBD16                --------->LBD16             --------->At4g35610              --------->ATERF1(1)               --------->RAP2.6(2)        <---------RAP2.6(2)          --------->DAG2   --------->GLK1(1)             <------NtERF2     <---------ALFIN1                    --------->LBD16      <---------GLK1(1) -----ARR14(2) --------->DEAR3(1)        --------->RAP2.6(3)      <---------HSFB2a(2)  <---------ARR11(3) >LBD16      ------>NtERF2  --------->At4g35610                   --------->HSFB2a(2)  --------->ARR11(3) >ABI4(1)<-----------HVH21  --------->ANAC46<---------At4g35610  <---------LBD16<------NtERF2 -ATERF1(1) --------->ANAC46<---------At4g35610          <---------ALFIN1  <---------DEAR3(1) ---->ARR14(2)<---------LBD16--------->AtMYB61        --------->ANAC46---------->DOF2 <------ZmHOX2a(1)   tttgtccgaaatgtccgccggacttacttcacctcaccctaatttcggctgtgtaatcgccacttcttccggtaaagtcgccggagaaggatatctatac  17473300                                                              <---------ALFIN1                                         <---------ANAC46    <------NtERF2                                        <---------LBD16      --------->ATERF1(1)                                       --------->MYB52(1)   <---------ATERF1(1)                                    --------->At4g35610     ------>NtERF2                                    <---------ZAT2          <---------RAP2.3(1)                                    --------->ZAT2         --------->RAP2.3(2)                                    <---------At4g35610    --------->ANAC58                             <---------MYB46(3)            --------->ANAC58                          <---------MYB46(3)               --------->ANAC46                         --------->WRKY38(1)               --------->PCF2                        <---------MYB52(1)--------->LBD16 --------->RAP2.3(1)                     ---                  <------NtERF2 <---------REM1(1)    <---------HSFB2a(2)                  <---------MYB46(3)               <---------LBD16--------->At4g35610    --------->HSFB2a(2) <---------AHL20(2)    <-----            --------->DEAR3(2)<-------GAMYB<------NtERF2  --------->ATERF1(1)            <---------YAB1 -----------WRI1  --------->ATERF1(1)  ------>NtERF2 <---------HSFC1(1)  --------->AHL20(2) <--------   gctcaaggtactaaaccggcggaagcgttggctgttgaagctgccggagagttttctagaggcgccactgcttatttaaacatggagcctggtgattgtc  17473400                                                                                  <------------ATHB5                                                                                  --------->ATHB12                                                                                  -------->ATHB1                                                                                  <--------ATHB1                --------->ARR14(2)                                                <---------ICU4                <---------ARR14(2)                                                --------->YAB1                ------->TEIL                                                     <---------YAB1               <---------CCA1(2)                                                 <---------ATHB51           <---------ZAT14                                                       <---------ATHB12       <---------ALFIN1                                                          --------->ICU4      --------->ZAT18                      <----------DOF2          --------->ANAC46   <---------ANAC58      <---------ZAT14                  <---------ANAC58             --------->ANAC58   <---------ANAC46      --------->ZAT14                  <---------ANAC58             --------->ANAC58   <---------ANAC58 ------>ICU4 <----------DOF2  <---------TOE1(3)      <---------GLK1(2)     --------->ANAC46 ----YAB1  --------->At4g35610<---------TOE2(3)      --------->ARR11(3)    --------->ANAC58 -WOX13(1) --------->ZAT14   <-----------RAV1(2)     <---------ARR11(3)    --------->ANAC58       <--   atggtgaccacactgctgtatctgctcttgttcaggtttttgcttctttctcttagatttttctgtgaataagccataagccaatgattgtgtgatatta  17473500                  <---------TOE2(3)             ------>MYB83             ------>MYB46(1)                                                                        <           <---------MYB59                                                                          -        >>>>>>>>>>WRKY43                                                                  --------->ARR14(2)        >>>>>>>>>>WRKY38                                                        <---------ARR11(3)  <        <-----------GT1                               <---------MYB46(3)        --------->ARR11(3)  <        >>>>>>>>>>WRKY26              <------ZmHOX2a(1)                        --------->REM1(1)   <- ----ZmHOX2a(1)   <---------YAB1--------->MYB59    <---------MYB46(3)   ------>ZmHOX2a(1) <---------ARR14(2)   ggaaacaatttgaccaaattgagattgtatagattaggcaggaattgaacgagttgttgttggaataaggcatcctttgcaacatcttagaggctctgcg  17473600  Previous    Next  AGI:  At3g47390.1    Description:  cytidine/deoxycytidylate deaminase family protein. similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT4G20960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22957.1); similar to putative riboflavin biosynthesis protein ribD [Oryza sativa (japonica cultivar-group)] (GB:BAD19619.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60371.1); contains InterPro domain Conserved hypothetical protein CHP02464 (InterPro:IPR012816); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Riboflavin-specific deaminase, C-terminal; (InterPro Range:  from: 17473079    to: 17475640    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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