Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                      <---------At4g35610                   ---------                                                      --------->At4g35610                   ---------                                                      <---------ZAT2                        <--------                          --------->TOE2(3)        <-------TEIL                 ---------->DOF2 -----                --------->MYB46(3)                --------->CCA1(2)  <---------ALFIN1  ---------->DOF2              --------->ANAC46           <------ZmHOX2a(1)           --------->ZAT6 ----------->GT1--   gcttcgaacaaaaaacaaaccactaataccctaaaactctataggactctagatacagctgatcaattccaacactgaaacaaaaagagtaaagaagcca  17465300                                                                            --------->ATERF1(1)                                                                    <-----------RAV1(2)                                                            ------->TEIL   <---------ATERF1(1)                                                            --------->ARR14(2)                                                            <---------ARR14(2)    --------->ANAC46                                                         <---------YAB1   --------->ARR14(2)                                                     ===========================HOX2a_HOX2a        <-                                                     ------>ZmHOX2a(2)    <---------ARR14(2)   <----- ------>DAG2                                       <---------ARR11(3)    <------ZmHOX2a(1)  <-------- >ANAC58                                           --------->ARR11(3)--------->LBD16        <-------- >ANAC58                                         ------>ZmHOX2a(1)  <---------HSFB2a(2)  <----------DOF2 --ID1 --------->TOE2(3)                       =================================HOX2a_HOX2a <-------- ----->DOF2       <---------ARR11(3)           ------>ZmHOX2a(2)    --------->HSFB2a(2)--------->ZAT2 --------->GT1    --------->ARR11(3)         --------->ARR11(3) --------->At4g35610    --------->At4g35610   aaggtgaaacctttttccaagttcttcacattttttgaagagagagtgatcctgatcttatgaatctgctccagaggagcctccaaaccagctttcgtgg  17465400             --------->ANAC58     <---------MYB46(3)                --------->ZAT6     <---------DEAR3(2)     --------->REM1(1)                                             --------->ARR14(2) ---------DOF2              <---------ALFIN1                                      --------->ANAC46 ----ZAT18   --------->ANAC58          <-----------GT1                       --------->YAB1 -ANAC58     --------->ANAC46     <----------DOF2                           <---------ATHB12       -- -ANAC58    --------->SPL7  <-----------GT1                               --------->WOX13(1)     ---- -ANAC46<-------TEIL      <-----------GT1       ---------->DOF2         <-------TEIL      <---------ARR14(2)   gcttcatcggttcatacgccatgttttgttacacctctttatcactctgcaaaagtcacatatataagaacagattcaatcaacacagaacaaatctccc  17465500                                                                              ----------->GT1                                                                          ---------->DOF2                                 --------->YAB1                         ------>ZmHOX2a(2)                          <-----------GT1                              <------ZmHOX2a(2)                        <---------AHL20(2)                            --------->ARR14(2)                  ------>ZmHOX2a(2)                     ----------->RAV1(1)   <----------ID1      <--                 <------ZmHOX2a(2)                     ------->GAMYB  <---------ARR14(2)         <---            ---------->DOF2 <---------YAB1    <-------TEIL         <---------TOE2(3)          <------ ------->ANAC46 <---------ARR11(3)          <---------ARR14(2)     <---------TOE1(3)---------->DOF2 ------->RAV1(1)--------->ARR11(3) <---------YAB1    --------->ANAC46<------ZmHOX2a(1)      ------->TEIL   aacacaacttcaacaaaagatcgtatttttatcatttatagttgccgattcatataacccacaaaaattaaggatccaaagagaaaaaaagatgaatatt  17465600                                ----------->GT1                                <---------MYB46(3)             <---------MYB46(3)                              <-------GAMYB                   --------->ALFIN1                             <---------MYB46(3)          <------ZmHOX2a(1)                     <---------RVE1(1)               --------->LBD16                    <---------ARR11(3)              <---------ANAC46                    --------->ARR14(2)             <---------LBD16                    <---------ARR14(2)            ------->GAMYB----------->GT1             <------NtERF2  <---------RAP2.6(2)  <------------AtMYB77           <---------LBD16  <---------ANAC58    --------->At4g35610  <---------MYB52(1)--------->ARR11(3)    <---------ANAC58  <------MYB83 -------At5g28300  <------ZmHOX2a(1)      <---------ANAC58  <------MYB46(1)     <----------DOF2   <-- --------GT1--------->LBD16 <---------ANAC58    <---------At4g35610          --------->ARR11(3)   <-- ---ICU4  <---------LBD16  <---------LBD16<---------ANAC46 <---------AtMYB61 <---------ARR11(3)   ---   taccgtttttaagccgggagaggattttttgcggttgtgaatttgtgtgcaactgcggaggaaggtggtgaagaaggaagaccttttattctctagggtt  17465700                                                                                   <---------MYB52(1)                                                                                  <-------GAMYB                                  ----------->RAV1(1)                            <---------ANAC46      *TSS                       <----------ID1 <---------ANAC58                 <---------ANAC58    <---------TOE2(3)          --------->ANAC58 <---------ANAC46             <----------DOF2   ---------->DOF2             --------->ANAC46 <---------ANAC58          <-----------GT1  --------->AHL20(2)           --------->ANAC58 <---------bZIP60(2)      <<<<<<<<<<GT-3b  <---------AHL20(2)         ---------->DOF2   ----------->STF1       --------->AHL20(1) -------AHL20(2)         <---------ANAC58    ----------->HVH21        <---------AHL20(1)     <------- -------YAB1             <---------ANAC58    ----------->TGA1       <---------AHL20(1)<---------ANAC46 ------>AHL20(2)       <-----------GT1  --------->MYB52(1)         --------->YAB1<---------ANAC58   ttaattaaagttttcatttttgtttttacttgaaagcaacaaaaacggtgacgttttagttttggaccataatatttttctttgcgttgtttgggtttgt  17465800                                     <----------DOF2                                   <------NtERF2 <---------------AtSPL3                                  --------->ANAC58   ------->TEIL                         <---------YAB1         <-------GAMYB                      <---------MYB52(1)       <---------ANAC46            <<<<<<<<<WRKY18       --------->ANAC58 <---------SPL7 --AtMYB61<-----------HVH21  --------->MYB59  <------NtERF2           ----------->GT1 <---------ALFIN1   ggaatctaggcctgtcaaaaacctgttatgttaggcccgctctatggtgtcgttgtacgtcttggttttatatagttaacaaaaacatccacttcaagtc  17465900                                                                     <---------ANAC58                                                                     <------MYB83                                                                     <---------ANAC58                                                                     <---------ANAC46                                                            --------->AHL20(1)                                                            <---------AHL20(1)                                                          --------->ARR11(3)                        <---------ANAC58                  <---------AHL20(1)                        <---------ANAC58  <---------------AtSPL8     <------MYB46(1)                   --------->ATHB12       --------------->AtSPL8    --------->MYB55(2)   ----------->GT1                   <---------ICU4  --------->DAG2         <---------ARR11(3)     <----------DOF2                  <---------ATHB12---------->DOF2   --------->YAB1  <---------MYB46(3) <------ZmHOX2a(1)   tccatctatgttttgtacaaatgatttcttgatacaaaaaggaatgggtactattcagaatatatattagtgggtgtaattcgtttttaggagggaaaac  17466000                                                                           <---------ANAC46                        <---------ANAC58                                   <---------ANAC58                        <---------ANAC46                              <---------ICU4 --------->AHL20(2)              --------->ANAC58                                       <------ZmHOX2a(2)              --------->ANAC58                                      <---------ARR11(3)        <---------ANAC46<---------ANAC58                            --------->ARR11(3)      --------->ALFIN1 <-----------------------TaNAC69(2)  --------->YAB1  <---------ANAC58 ---------->DOF2 ---------->DOF2 <-----------HVH21      <---------------AGL15     --------->YAB1  <--   tttcaaagttgtgggtaagaaaagagtcgtgctcgcgtcaaggagtttttttttcttccaataagaagtagatcatggcttgaaacataaaatgttgaat  17466100                                                          --------->YAB1                                                       --------->YAB1                    --------->ANAC58                                                       <---------ICU4                    --------->ANAC58                                          <---------AHL20(2)                            --------->DAG2                                         --------->AHL20(2)                            ---------->DOF2                             ----------->GT1          --------->ICU4           <---------ANAC58  <---  <-------TEIL<------ZmHOX2a(1)   <-----------GT1   --------->YAB1             <---------ANAC58  <--- -------TOE2(3)      <---------YAB1      <---------AHL20(2)        --------->AtLEC2  <------ZmHOX2a(1)   gaggttcacatttgtaggagaagatgaatgagagtaataccattttaatttcgataatcatcaaaatccatgaagaggtttgagtgaggaaaagctatgc  17466200  Previous    Next  AGI:  At3g47370.1    Description:  40S ribosomal protein S20 (RPS20B). Identical to 40S ribosomal protein S20-2 (RPS20B) [Arabidopsis Thaliana] (GB:Q9STY6); similar to 40S ribosomal protein S20 (RPS20A) [Arabidopsis thaliana] (TAIR:AT3G45030.1); similar to 40S ribosomal protein S20 (RPS20C) [Arabidopsis thaliana] (TAIR:AT5G62300.1); similar to 40S ribosomal protein S20 (RPS20C) [Arabidopsis thaliana] (TAIR:AT5G62300.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN62522.1); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848); contains InterPro domain Ribosomal protein S10, eukaryotic/archaeal; (InterPro:IPR005729) Range:  from: 17464463    to: 17465706    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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