Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------MYB46(2)         <---------WOX13(1)     <xxxxxxxxxxxxxxxxsmallRNA(se3) --------DOF2  <---------MYB111(2)     ------>ZmHOX2a(1)   <-----------GT1   ctttcaattccacattaactacctagttgtactacttgttcctgaatgaccattcacaaatttacgacctagttgtactacttgttttatctgaagcagc  17447500            --------->YAB1            <--------HAHB4                                             --------->YAB1     --------->YAB1            <---------ICU4                ------->TEIL           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)            --------->ATHB12      ------>ZmHOX2a(1)          ------->GAMYB                <---------ICU4           <---------ATHB12      --------->TOE2(3)          <------------MYB.PH3(1)   <xxxxxxxxxxxxxx         --------->WOX13(1)   <---------ARR11(3)          --------->MYB52(1)--------->TOE2(3)    --------->GLK1(1)         --------->ARR11(3)          <-----------GT1   <---------MYB59  <-------   attcacaaatccaatcatttaccaatgcataatatcctaaaacgagcctaatacaaaaaataacggtcttctatcataccttatttgctccatcatcatg  17447600                                                                                                   <x                                                                                                   <x                                                                                                  <xx                                             <----------DOF2                                     <---                                          <xxxxxxxxxxxxxxxxsmallRNA(s)                        xxxxxxx                                       --------->GLK1(2)                                      <xxxxxx                                       --------->ARR14(2)      --------->TOE2(3)        <-------GAMYB                 <---------ANAC58      <---------ARR14(2)     ----------->GT1         <---------ANAC58                 <---------ANAC46   --------->ANAC58         <------ZmHOX2a(2)        <---------ANAC58                 <---------ANAC58   --------->ANAC58        --------->ARR11(3)        <---------ANAC46              <---------MYB52(1)  xxxxxxxxxxxxxxxx>smallRNA(s)------>ZmHOX2a(2)      <------NtERF2<xx            --------->MYB52(2) --------->ZAT18              <---------ARR14(2)      ------>NtERF2----      ------->GAMYB            <---------ZAT18              <---------ARR11(3)     <---------DEAR3(1)    --------->At4g35610        --------->ZAT14              --------->ARR14(2)     <xxxxxxxxxxxxxxxxx  --------->MYB46(3)  <<<<<<<<<TBF1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->DEAR3(1) xxxxxxxxxsmallRNA(si3)  <<<<<<<<<TBF1<---------GLK1(2) ---------->DOF2           --------->ATERF1(1) --ICU4     <---------MYB46(3) <---------ZAT14        ----------->HVH21         ----------->HVH21----   ttgaacaactgcattcgttgcttcttcttcttctgcacaagaatcggcatttgggtctgaaagatcgtcaattgactcccatgcgacggcgtttgaatta  17447700                  <------------AtMYB77                  <---------MYB55(2)               --------->MYB46(3)            <------NtERF2           <-----------TGA1           ------>NtERF2           <-----------HVH21          <---------bZIP60(1)          --------->O2  <-------GAMYB          --------->bZIP60(1)          --------->bZIP60(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <------NtERF2  <---------MYB52(1)         --------->ATERF1(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->RRTF1(1)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->RAP2.3(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------DEAR4(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        ------>NtERF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <---------ATERF1(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------RAP2.6(1) <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------RRTF1(1)--------->MYB55(2)        <---------ERF1 <---------DEAR3(2)        <---------RAP2.3(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ORA47(2)<---------MYB46(3)       --------->DEAR3(1) xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <---------RAP2.3(2)xxxxxxxxxxxxxxxx>smallRNA(i)       <---------RAP2.3(3)<---------REM1(1)       <---------DEAR3(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ATERF1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------LBD16 <---------DEAR3(1)      <---------ABI4(1)<---------MYB46(3)  --------->ARR14(2)--------->MYB52(1)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->LBD16 xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          ------>NtERF2 xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <---------LBD16<-------GAMYB --------------AGL1--------->DEAR3(1)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       < xxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <---- xxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->At4g35610 ------>ZmHOX2a(1)  ---------->CDC5           ----- xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <-----------GT1 <-----------RAV1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------------->AGL1------->GAMYB<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------ARR10      <---------LBD16 xxxxsmallRNA(fl3)--------->MYB46(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------CCA1(2) ------------->AG --------->DEAR3(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>NtERF2 <----------DOF2   cccaaatcggcggcgtcacaaccgccggttgtaggctgaatttctccggcttcctcttctgttgtaagaagctctgcgccttcttcatctctttggggaa  17447800     --------->ATERF1(1)     <------NtERF2     <-------GAMYB     <---------At4g35610     --------->At4g35610    <---------ATERF1(1)    <---------RAP2.3(1)    <---------ERF1    ------>NtERF2    <---------MYB46(3)   <---------RAP2.3(3)   <---------ATERF1(2)   <---------RAP2.3(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------RAP2.6(2)                           ------->GAMYB         <---------At4g35610   --------->ATERF1(2)                   <---------DEAR3(2)          <-----------RAV1(2)   <---------DEAR3(1)                   <---------MYB46(3)     <---------ARR14(2)  --------->ATERF1(1)                   --------->MYB52(2)     <---------GLK1(2)  <------NtERF2            <------ZmHOX2a(1)     --------->TOE2(3)<-----------GT1                ---- ---------DEAR3(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->ARR14(2)   --------->ZAT6 -----ARR14(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->YAB1     <----------DOF2   *TSS ---->GLK1(2)      ----------->HVH21  <---------MYB52(1)   <-------TEIL--------->At4g35610     <-----   tctcggcggctgtctcttcgactgatggaggaatttcgccggtcgtttcaaccctagttgattcatattctccagatgagtcttttactctagccatatg  17447900                                                                            <------NtERF2                                                                          <---------DEAR3(1)                                                                       <---------ANAC58                                                                       <---------ANAC46                                                                       <---------ANAC58                                                                       <---------O2                                                         ----------->GT1 <------NtERF2                                                         --------->LBD16<-----------HVH21                                                       <---------LBD16 --------->bZIP60(1)              --------->ANAC58                       <-----------GT1   <---------bZIP60(1)     ---------->DOF2        ---------->DOF2   <---------WOX13(1)      <------NtERF2 <----------ID1   --------->MYB52(1)         <------------CBF  <------------CBF               ------>NtERF2 ------>DOF2  --------->ANAC58             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------TGA1a ----YAB1   --------->MYB52(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------O2 --------   aaagagacaaagacgaacgaaaacggagaagaaagaagaatagaagagattgatttttccggtgaaattggtgtcgtcggagacgagagaagacgacgac  17448000                                                                                               xxxxxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            <--------                                                                                            <--------                                                                                       xxxxxxxxxxxxxx                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxx                            --------->DAG2       <-----------GT1              xxxxxxxxxxxxxxxxxxxxxxx                           --------->DAG2 <---------TOE1(2)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     ----------->GT1      <---------TOE2(2)                  ----------->RAV1(2)                 --------->HSFB2a(2) <---------ARR11(3)                 xxxxxxxxxxxxxxxx>smallRNA(i)        <------ZmHOX2a(1) ---------->DOF2 <---------TOE2(3)      --------->At5g28300 <------NtERF2 ->DEAR3(1)      <---------HSFB2a(2) --------->ARR11(3)         ----------->GT1    xxxxxxxxxxxxxxxxxx   ggagagaagaggaagaagtcgagaagtgaaaagggggaagaacttaggttttttctgtagtttctagggtaaataatacaactgggccgagtatttacat  17448100  <----------DOF2                              xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------ANAC58 xxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------ANAC58     <---------ANAC58 xxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ------>ZmHOX2a(1) --------- ---GT1<---------PCF2           <---------ANAC46                <---------ANAC58         --------->YAB1 -AHL20(2)                      <---------ANAC58<---------ARR14(2)   ------>ZmHOX2a(1)  <---------YAB1 xxxxxxxxx>smallRNA(si3)        <---------ANAC58--------->ARR14(2)   <----------DOF2   --------->AHL20(2) xsmallRNA(i)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)---------->ID1       <---------AHL20(2) >smallRNA(le3)           <---------TOE2(3)<---------ANAC46   <-----------GT1   <-----------GT1 xx>smallRNA(si3)----------->RAV1(1)      xxxxxxxxxxxxxxxx>smallRNA(i)   --------->TOE2(3)  ---------   ttttctttgggcccgagtccaacaaattaagttttcttgtagttttcgtggtttcgcaagggtttttcgtcctttcctcaattttcgattttaataaaaa  17448200                                                    <--------ATHB1                                                    <------------ATHB5                                                --------------->AGL15                                                <---------------AGL15                                               <-----------------AGL1                                               ----------------->AGL2                                        <-----------GT1                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxsmallRNA(s)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      <---------ICU4 <---------ICU4 --------->ATHB51                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 --------->TOE1(2)  --------->ICU4 <---------ATHB12                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxx>smallRNA(i)  ----------------->AGL3                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ICU4      <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            ----------->RAV1(1)     <---------AHL20(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         --------->MYB52(1)   --------->AHL20(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->YAB1--------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->LBD16  --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(s) <---------ATHB12--------->TOE2(2)  <---------YAB1 <---------ATHB51       <---------LBD16 >AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ICU4    --------->At4g35610 >YAB1<---------AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(s)--------->YAB1   <---------At4g35610------->GAMYB   tcaataatattattccaaacataagaatggcacgagtgattatttcttctccaataatggcataagaggtgagctctccggagaagacaacagaagaagt  17448300                                                                                      --------->AHL20(1)                                                                                      <---------AHL20(1)                                                                                      --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                                     --------->AHL20(2)                                                                                     <---------ATHB12                                                                                --------->ANAC46                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                             --------->ZAT14                                                     --------->ANAC46        <---------ZAT18                             <---------YAB1        <---------ALFIN1          --------->ZAT18                            <---------ARR11(3)   <-----------GT1             <-------TEIL              ----------->HVH21          <-----------GT1 <---------ALFIN1<---------------AtSPL8   ----------->GT1          --------->AHL20(1)<---------DAG2       <---------------AtSPL8   <---------ZAT6           <---------AHL20(1)<----------DOF2     ---------->DOF2--------->MYB46(3)   caattgtgttaaatagatgacaacgtccaatatttttgtaatattacacttttacacccccatgttttgaaagtacaagtacacccaataaatttttgaa  17448400  Previous    Next  AGI:  At3g47330.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09370.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37390.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) Range:  from: 17445478    to: 17447897    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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