Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ICU4  --------->At5g28300 ----------->GT1 --------ANAC46 ---------RAV1(2)                                                     --------->ARR14(2) ------ZAT14                   <------ZmHOX2a(1)                      <---------ARR14(2) ----->ZAT14       --------->REM1(1)                      <---------WOX13(1) ----RAV1(1)  <---------ARR11(3)                        --------->ATHB12      --------->REM1(1) -ANAC58    --------->ANAC58 --------->LBD16    <---------ARR11(3)   --------->At4g35610        ----- -ANAC58    --------->ANAC58<---------LBD16     --------->ARR11(3)<---------At4g35610        <-------   gcagggtaattagcaagaactacatctaatccaggaaaaacactctctaacatcttcttcattgatacagcagttcccctacaatacaaagactaatgaa  17440200                   --------->TOE1(3)                                   --------->GLK1(1)                --------->DAG2                                         --------->At4g35610               ---------->DOF2                                       <------ZmHOX2a(1)           <---            --------->YAB1                         --------------->AtSPL3 <-------TEIL        -------           <---------YAB1                          --------->DAG2    ========================HOX2a_HOX2a   --------->TOE2(3)                       <---------GLK1(1)      <-----------RAV1(2) ------>ZmHOX2a(2) -->TEIL--------->ICU4---------->DOF2 ---------->DOF2    <---------------AtSPL3     <---------ARR11(3) --ATHB12--------->YAB1       --------->WRKY12    ---------->DOF2--------->ZAT2     --------->ARR11(3)   tcaaatctaaatgatgataaagcttaaagccattgacttagaaagaaatcggaaaagtacttgtacgagcaggagatgcagaagttgatctctacggtgt  17440300                --------->WRKY38(1)         <---------ALFIN1                                       <---------ARR11(3)                 --       ----------->RAV1(1)     <----------ID1             --------->ALFIN1                         <-   --------->ARR14(2)        ---------->DOF2            <---------ANAC46                          <--   <---------ARR14(2)   --------->At4g35610             <---------ANAC58                         <---  <---------CCA1(2)     <---------At4g35610          --------->ALFIN1                           ----- --------GT1    --------->WRKY12       --------->ATHB12 <---------ANAC58                    --------- -->ALFIN1    --------->At4g35610   --------->MYB52(1)  --------->ALFIN1   <------ZmHOX2a(1)<--------   ttccatatccaacaccagttgacttctgctaaaaagacaaacgattagaacacaagtggtgtgcgagatgttatgtaggaatgaattcgacttcacctgt  17440400                                                              <---------ANAC58                                                              <---------ANAC58                                                              <---------ANAC46                                                          --------->ATERF1(1)                                                         <---------MYB46(3)                                                        <---------AtMYB61                                                        --------->ALFIN1                                                       --------->ATERF1(1)                                        --------->At4g35610  <------NtERF2                                     <------MYB46(1)   <-------GAMYB                                     <------MYB83      <------NtERF2     --------->ARR11(3)             <---------MYB46(3)<---------MYB46(3)                       ======     --------->GLK1(2)             <---------WOX13(1) <---------DEAR3(2)                      -------    --------->GLK1(1)            --------->ATHB12    <---------DREB2C(2)                ---------->DOF2    <---------GLK1(1)            <---------MYB46(3)  <---------DEAR3(1)           =================== ------->LBD16                  <---------YAB1      <---------ABI4(1)             ------>ZmHOX2a(2) --------ANAC46              --------->ALFIN1      <---------RAP2.3(1)           <------ZmHOX2a(2) -------ANAC46               <---------AtMYB61    <---------RAP2.6(2)            ==================== ------LBD16                 <---------DEAR3(1)<---------GLK1(1)                 ==================== ---->ALFIN1              <---------DEAR3(1)  --------->ARR11(3) --------->REM1(2)=================== -->RAV1(2)           --------->CCA1(2) <---------At4g35610  <-----------------------TaNAC69(2)<----- -At4g35610  <---------GLK1(1)<---------MYB46(3)  <---------DEAR3(1)           <---------GLK1(1)   --   gcggggaaatctagggtttctgagatagacggtggtgattggtgctgagatttcggcggtggaggcgtgaagagattgaagagatcggaacaaagcagga  17440500          ===============HOX2a_HOX2a          ------>ZmHOX2a(1)                      <---------GLK1(1)   <---------MYB52(1)                     <---------ARR14(2) ========================HOX2a_HOX2a      --------->ARR14(2) ---->GT1<---------MYB59                  <---------GLK1(2) ================HOX2a_HOX2a             <------NtERF2 ================HOX2a_HOX2a           <---------ANAC58                                        ------ =HOX2a_HOX2a                     <---------AtLEC2                                        <------ZmHOX2a(2) =HOX2a_HOX2a     <------ZmHOX2a(2)    <---------ANAC46                                 --------->GLK1(1) -ZmHOX2a(1)     --------->ARR11(3)    <---------ANAC58                               =============== ------->GLK1(2) <---------ARR11(3)   <---------LBD16                                 <------ZmHOX2a(1)   aaatcggtagtcctaacaagatcaattgtgttttgtccatggcggattttgaaatctcagagagggaatttgaagttgaaattttgaaggagatcgatcg  17440600                                                                                               ------                                                                                               ------                                                                                       xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    xxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                <-----------HVH21 xxxxxxxxxxxxxxxxxxx                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)   <-----------GT1                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxx                                               xxxxxxxxxxxxxxxx>smallRNA(s)----------->GT1  ------->TEIL                                              xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxx                                            <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                            ------>ZmHOX2a(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxx        <----------DOF2                   --------->ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        *TSS                              <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------ARR11(3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ARR11(3)                xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) >ZmHOX2a(2)              <----------DOF2<xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) =HOX2a_HOX2a             <---------DAG2xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   gagaagagaacttttatcacttatgccactttttttaaaaaactgatctggactgccatcagtgaatgtcaccgaaaatgtgatataccagttgtaccct  17440700         --------->AHL20(2) --->TOE2(3) --------->AHL20(2) --->TOE1(3) <---------AHL20(2) xxxxxxxx>smallRNA(fl3) xxxxxxxxsmallRNA(fl3)                                                                              < xxxxxxxxxsmallRNA(si3)                                                                             - xxxxxxx>smallRNA(i2)                                                                            <--- xxxxxxxxsmallRNA(fl3)                                  --------->GLK1(2)                 xxxxxxxxxxx xxxxxx>smallRNA(si3)                                  <---------GLK1(2)                 <<<<<<<<<TBF1 xxxxxxsmallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxx xxxxx>smallRNA(l2)                         ----------->GT1                        xxxxxxxxxxxxxxxx>smallRNA(i) xxxx>smallRNA(si3)                       ---------->DOF2              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxsmallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxsmallRNA(se3)       ---------->DOF2        --------->ARR14(2)       <------NtERF2    <--- xxsmallRNA(fl3)     ---------->DOF2 --------------->AGL15     <---------MYB52(1)<---------ANAC46<--- xsmallRNA(si3)   --------->AHL20(2) <---------------AGL15<-----------GT1     <---------DEAR3(1) <xxx xxsmallRNA(se3) --------->AHL20(2)----------->GT1     <---------ARR14(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   taatgagttgattaaaaaaataaaaaagaaattcaaaagctaaataaagaaaatcgagattctccgttctctcttcttcgtcgtcgtgttcttcttcttg  17440800                                              ------>NtERF2                                             --------->DEAR3(1)                                             --------->DREB2C(2)                                            --------->ORA47(2)                                            --------->ATERF1(1)                                            --------->RAP2.3(1)                                            <------NtERF2                                           <---------ATERF1(1)                                           ------>NtERF2                                          --------->DEAR3(1)                                          <---------DEAR3(1)                                          --------->RAP2.3(3)                                          --------->RRTF1(2)                                          <---------ATERF1(2)                                          --------->RAP2.3(2)                                          --------->RAP2.6(2)                                          --------->ATERF1(2)                                         --------->RAP2.3(1)                                         --------->ATERF1(1)                                         <------NtERF2                                         --------->ORA47(2)                                         --------->RAP2.6(1)                                         --------->DEAR4(2)                                         --------->ERF1                                         --------->RRTF1(1)                                        --------->ATERF1(1)                                        <---------RAP2.3(1)                                        <------NtERF2                                        <---------DREB2C(1)                                        <---------ATERF1(1)                                        <---------DEAR4(2)                                        --------->DREB2C(1)                                        ------>NtERF2                                        <---------At4g35610                                       --------->RAP2.3(2)                                       --------->ATERF1(2)                                       --------->RAP2.6(2)                                       <---------ATERF1(2)                                       <---------DEAR3(1)                                       <---------ATERF1(1)                                      --------->RAP2.3(1)                                      --------->DEAR3(2)                                      --------->ATERF1(1)                                     ------>NtERF2                                    ------>NtERF2                                <---------ARR14(2)                          --------->AtMYB61--------->ABI4(1)                         --------->MYB46(3)<---------At4g35610                        ------>NtERF2--------->ATERF1(1)                       --------->RAP2.6(2)--------->RRTF1(3)                     --------->ATERF1(1)--------->At4g35610           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->RAP2.3(3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->At4g35610      xxxxxxxxxxxxxxxx>smallRNA(i)  <---------SPL7      <-------TEIL   <------NtERF2  --------->LBD16 ---------DEAR3(1)  <---------DEAR3(2)--------->SPL7 -------->DEAR3(1)  <---------ATERF1(1)--------->DEAR3(1)                      <------MYB46(1) ------ANAC46       ------>NtERF2  <---------RAP2.6(2)            --------->DAG2   --------->MYB52(2) xxxxx>smallRNA(i) <---------DEAR3(1)<---------ATERF1(1)        ---------->DOF2<------MYB83 xxxx>smallRNA(i)<-----------HVH21<---------LBD16           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------GLK1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->LBD16     --------->MYB59 xxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->ARR14(2)   --------->GLK1(1)--------->MYB52(1)          xxx   cgtcgacgttcatcttcttcgtcggccaccatcgattccggccgccgccgacttgaaatccgtcgtaaaaggcaacgaattaggtcagtttcttctcata  17440900                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------YAB1               xxxxxxxxxxxxxxxx>smallRNA(i)              --------->ZAT18              <-------TEIL         --------->ARR11(3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                ----------     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   --------->ARR14(2)      <------MYB46(1)    ----------->HVH21      <---------TOE2(3)                <---------ARR14(2)      <------MYB83   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <---------TOE1(2)      <xxxxxxxxxxxxxxxxxxx   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->AHL20(2)            --------->ATHB12   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------AHL20(2)                 <---------YAB1  <----------DOF2  <xxxxxxxxxxxxxxxxsmallRNA(s)   <---------AHL20(2)<---------YAB1<---------WOX13(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->AHL20(2)<-------TEIL     --------->ICU4   ----- xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<------ZmHOX2a(1)     <---------LBD16       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)   tttcctttgacattggtgcattgtgattttagattaggattttgaattatatataattcccagattcaatttgatagtttgatgattggtttgcaaagta  17441000                                     --------->ALFIN1                                   <---------At4g35610                             --------->MYB52(2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <---------MYB52(1)                         ----------->GT1                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                <--------P--------->TOE2(3)                                                       <--     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          <-------GAMYB   --------->LBD16 >DOF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <------MYB83<---------At4g35610 --------->GLK1(1) xxxxsmallRNA(i2)    <---------RAP2.6(3)     ---------->DOF2        --------->At4g35610<---------ARR11(3) ----->DOF2  <---------TOE2(3)    <---------TOE2(3)     <------MYB46(1)        <---------GLK1(1) ----   aagagtaatcgattagaggttgccgaaacgttatttgaggtgatgagcaaaggaatgtaggttgaatgtgagttgaatttgaattccgagatttcatatt  17441100  Previous    Next  AGI:  At3g47300.1    Description:  SELT (SELT-LIKE PROTEIN PRECURSOR); selenium binding. Identical to SelT-like protein precursor [Arabidopsis Thaliana] (GB:Q9STZ2;GB:Q67ZS9;GB:Q6NQE9); similar to selenoprotein-related [Arabidopsis thaliana] (TAIR:AT5G58640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50132.1); contains InterPro domain SelT/selW/selH selenoprotein; (InterPro:IPR011893) Range:  from: 17439428    to: 17440608    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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