Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------->ATHB12                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                              <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <-----------GT1  <------MYB46(1)                                                     <---------ANAC58   <------MYB83                                                     <---------ANAC58  --------->MYB59                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------TOE2(3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------ICU4  <------MYB83                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------WOX13(1)<---------MYB46(3)                          -------->Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->MYB52(2)                      --------->ZAT6xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               --------->ICU4xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ICU4   <------MYB46(1)             xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------TOE2(2) <     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------MYB52(1)<- ----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>ZmHOX2a(1) ->DAG2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)   <---------O2     <---- ->DOF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   gtctttttctgaaggccatttttaaaactacctcttctaatatgccaaatgactgtcttaccctctgaatgattaggtttcacgttggtttcctctccga  17413700                                                                                  <-----------GT1                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 --------->GLK1(1)                                                                                <-----------ARR10                                                                                --------->ARR14(2)                                                                            <------NtERF2                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                           <---------ATERF1(1)                                                                           --------->LBD16                                                   ------>ZmHOX2a(1)       ------>NtERF2                                                <-----------GT1           --------->ATERF1(2)                                               <-----------GT1            <---------ATERF1(2)                                        <----------DOF2                   --------->DEAR3(1)                             ---------->ID1   <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B  <---------ARR14(2)                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <---------DEAR3(1)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <---------LBD16          ---                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  --------->ATERF1(1)      <xx                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <-----------------AGL1        ------>ZmHOX2a(1)          --------->YAB1<XXXXXXXXXXXXXXXXXXXXXMIR2933A/B   ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) - -----------GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->ANAC46xxxxxxxxxxxxxxxx>smallRNA(s) ----------GT1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxx -----GLK1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(i)   ------>ZmHOX2a(1)   ttttcctcttcttcattttggcacaaacttcttcgttttcctctttgattttcctctccgatttcactcaaaatcgccggcgaatttcctctccgatttc  17413800                                                                                 <------NtERF2                                                                                ------>NtERF2                                                    <-----------GT1   --------->YAB1                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)--------->DEAR3(1)                                             ------>NtERF2           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                             --------->MYB52(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             xxxxxxxxxxxxxxxx>smallRNA(i)      ----------->HVH21                                            --------->DEAR3(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                           xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------GLK1(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->At1g77200         --------->At1g77200        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->RAP2.3(1)         --------->DEAR3(1)      --------->ANAC46  <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B        --------->DEAR3(2)      <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)<---------AHL20(2) ------>ANAC46 --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) --------->YAB1  --------->GLK1(1)--------->ANAC46 ------->TEIL -------->YAB1<XXXXXXXXXXXXXXXXXXXXXMIR2933A/B    ------->TEIL     <xxxxxxxxxxxxxxxxsmallRNA(s)     x xxxxx>smallRNA(i)       xxxxxxxxxxxxxxxx>smallRNA(i)   ------>ZmHOX2a(1) <xxxxxxxxxxxxxxxxsmallRNA(i)   actcaaaatcaccgacgaattccctctccgatttcactcaaaatcgccaacgaatttcctctccgatttcactcaaaatcgccgacgaattttttttctg  17413900                                                              <------ZmHOX2a(2)                                                             <---------ARR11(3)                                                             --------->ARR11(3)                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            <---------At4g35610                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxx>smallRNA(i)           ------                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)          -------                                                       --------->ARR14(2)                 --------->LBD16                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <---------LBD16                          ------>ZmHOX2a(1)            <---------ARR14(2)               xxxxxxxxxxxxx               ----------->RAV1(1)                    ===============HOX2a_HOX2a      <xxxxxxxxxxxxxx               --------->ORA47(1)                     <------ZmHOX2a(1)            <xxxxxxxxxxxxxxxxsmallRNA(i)               ------>NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxxx              <---------ETT(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->ANAC58    x              --------->At1g77200                ----------->HVH21              --------->ANAC58  <xx              ----------->HVH21                --------->At4g35610              <xxxxxxxxxxxxxxxxsmallRNA(s)              --------->DEAR4(1)               <---------At4g35610          --------->ANAC58  xxxxxxx              --------->DREB2C(2)           xxxxxxxxxxxxxxxx>smallRNA(s)    --------->ANAC46  <------              --------->RAP2.3(3)      xxxxxxxxxxxxxxxx>smallRNA(s)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)              --------->DEAR3(1)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC58<xxxxxxxx             --------->RAP2.3(1)   <-----------GT1   xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxx       ---------->DOF2<-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(i)        --------->ANAC46 xxxxxxxxxxx xxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   agaaaccccaaaatcgccgacaaatttcctctccgataaacctgttcttcgctgaaggattcagatcatttctctacgacgcaaacaatccccagagata  17414000           <xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxsmallRNA(s)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       ----------->HVH21      ------>ZmHOX2a(2)      xxxxxxxxxxxxxxxx>smallRNA(s)      --------->DEAR3(2)     --------->CCA1(2)     <------ZmHOX2a(2)    <---------ARR14(2)    --------->ARR14(2)    --------->AGP1       <---------YAB1                                           ----------->TGA1   xxxxxxxxxxxxxxxx>smallRNA(s)                                                   ----------->HVH21  ----------->ARR10    --------->YAB1                                            ------>ZmHOX2a(2) <xxxxxxxxxxxxxxxxsmallRNA(s)                                                    xxxxxxxxxxxxxxxx>smallRNA(i) --->GLK1(1)--------->DOF5.7(2)                                                 --------->CCA1(2) -->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)                                        <------ZmHOX2a(2) xxx>smallRNA(s)      <---------YAB1                                           --------->ARR11(3) xxsmallRNA(s)  <------------MYB.PH3(1)                                        <---------ARR14(2) xxxxxsmallRNA(i2)   <-----------TBP                                           <---------ARR11(3) xxxxxxxxxxxxxxx>smallRNA(i)                                          <---------AHL20(2) xxxxxxxxxxxxxxsmallRNA(i)                    <---------AHL20(2)     <-----------TBP xxxxxxxxxxxxxxxx>smallRNA(se3)              --------->AHL20(2)      --------->AHL20(2)     <xxxxxxxx ---ARR11(3)--------->At5g28300              <-----------TBP    ------------>CBF<---------At4g35610 xxxxxxxxxxxxxxsmallRNA(si3)      <---------AHL20(2)      <---------AHL20(2)   --------->ARR14(2) xxx xxxxsmallRNA(i2)  <---------MYB52(1)<---------YAB1      --------->AHL20(2)    <---------AGP1  xxxxxx xxxxxxxxxxx>smallRNA(fl3)       --------->AHL20(2)      <-----------TBP       --------->AGP1--------   tcgatagatccgacggtaaccgtttttataatcgattttataatcgattttatagtcgattttatagtcaattttatagtagatctgacgctgtttcata  17414100                                                                            --------->ZAT18                                                                            --------->ZAT14                                                                            <---------ZAT14                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     --------->GLK1(2)                                                                   <------ZmHOX2a(1)<xxxxxxxxxxxxxxxx                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               --------->ALFIN1     --------->ARR14(2)                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           --------->GLK1(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------GLK1(1)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              *TSS    ----------->GT1   <---------ANAC58    --------->DAG2<xxxxxxxxxxxxxxxxsmallRNA(s)         --------->At4g35610            <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(se3)           <---------ANAC46   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      < xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ZAT18    ------ xxxxxxxxxxxxxxxxx>smallRNA(fl3)------>ZmHOX2a(1)--------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ->YAB1  <---------At4g35610  <---------ICU4   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ARR14(2)   acatgttttgcagatggattcagagagtgaaatccttacattgcctgaacaaatctacagagaaggtgaggaatctattgcactgggaaccgttcaacaa  17414200                                                                                   ------>ZmHOX2a(1)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <----------DOF2                         <---------ANAC58    --------->ARR14(2)          xxxxxxxxxxxxxxxx>smallRNA(i)            <---------MYB52(1)          <    <---------ARR14(2)        <------ZmHOX2a(1)                       --------->MYB52(2)        xxxxx xxxxxxxsmallRNA(fl3) --------->DAG2                                 <-------TEIL<xxxxxxxxxxxxxxxxxxx ---------LBD16       xxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------At4g35610<---------ANAC58   <xxxxxx --->YAB1            ---------->DOF2                  <---------HSFB2a(2)  <---------ANAC46xxxxxxxxxx   tactcggattggaatttagttagtaaagtagaggaagctttaggcgagtgtttatttcagaagattagaagttcgtttcttggtcctctagttgaattgg  17414300                                   --------->LBD16                                  <---------HSFC1(1)                                  --------->HSFC1(1)               ----------->GT1                                  <---------HSFB2a(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  --------->HSFB2a(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            <---------ARR14(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            --------->ARR14(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <---------ARR11(3)               --------->ZAT2                            <---------GLK1(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     --------->GLK1(2)   --------->At4g35610 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------ARR11(3)  <---------ZAT2  ---------->DOF2 xxxxxxxxxxx>smallRNA(i) --------->YAB1  --------->ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(s) xsmallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ----------->RAV1(1)    <------ZmHOX2a(2) xxxxxxxxxxxxxxxxxsmallRNA(l2)   <---------LBD16 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <----------DOF2 xxxxxxxxxxxx>smallRNA(si3) --------->ARR11(3) --------->ZAT6<---------At4g35610 <------ZmHOX2a(1)  <   gaccaaaaatgaaggctaagaagggaatcagattttctggaaaaatctttcactatctcatgcagcagagagtgaaaacaaaaggatcaactctttggtt  17414400                                                                                               <-----                                                                                            ------->GAMYB                                                                                            <--------                ------>MYB46(1)                                                           <---------At5g28300                --------->ARR14(2)                                                       <-----------GT1                <---------ARR14(2)                                                       --------->MYB52(1)                ------>MYB83xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <-----------GT1        <---------AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              ---------->DOF2               --------->AHL20(2)     <---------GLK1(2)--------->ARR14(2)            --------->ANAC55(2)           --------->TOE1(3)   ----------->ARR10 <---------MYB52(1)             ----------->GT1               --------->TOE2(3) ---------ZAT6--------->AtMYB61                     <---------ANAC55(2)       ---------->DOF2<-------   tagagttgattctcaacctatccgtttctccttgagagagttctatctcacaacaggtaataaagttttacaatcgtttttaaagcttaattaactgtcg  17414500                                <---------ANAC46                       <---------ARR14(2)               <xxxxxxxxxxxxxxxxsmallRNA(le3)       <-----------GT1 --------->MYB52(1)   --------->ATHB12 <---------AtLEC2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->ICU4  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----ANAC46--------->ANAC46     <---------ANAC58                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---RAV1(1)--------->ANAC58     <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <- ----HVH21 --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <-----------HVH21          -------   tagaatgatttacaaggcatttgcataactgtttgcgtagtttacaatcgtttttaaaacataagtaagtgtcatagataatttacaagggattttaaaa  17414600  Previous    Next  AGI:  At3g47260.1    Description:  transposable element gene. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04010.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G44500.1); similar to hypothetical protein 26.t00072 [Brassica oleracea] (GB:ABD65017.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) Range:  from: 17414114    to: 17418812    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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