Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <<<<<<<<<<<                                                                                         <------ZmHOX2a(1)                                                                                        <----------ID1                                                                                   -------->HAHB4                                                                                   --------->YAB1                               --------->LBD16           <--------HAHB4           --------->ICU4                              --------->HSFB2a(2)        --------->ATHB12         <---------YAB1                        --------->DAG2                  <---------ATHB12      --------->LBD16                       ---------->DOF2            --------->At4g35610        --------->ANAC55(2)      <-----------RAV1(1)     <---------HSFB2a(2) <---------At4g35610        --------->ANAC46    <----------DOF2 --------->ANAC46           <---------At4g35610          <---------LBD16  -------- ----------DOF2  <---------ETT(2)             <-----------RAV1(1)<---------At4g35610  <---------ICU4   tcctttctttgttgccctgtctacgaaaagctccagaaaccgaaacttgtgctgctgaatcatttggaggtgattttctccgtaatgataaggaccaatg  17412300                                                                                 --------->At4g35610                                                                                 <---------ZAT2                                                                                 --------->ZAT2                                                                             -------->P                                                                 --------->At4g35610                                                                 <---------ZAT2  <---------At4g35610                                                                 --------->ZAT2  ----------->RAV1(2)                                                                 <---------At4g35610                          <---------ARR14(2)        --------->GLK1(2)   ------>NtERF2                          --------->ARR14(2)       --------->ARR14(2)  --------->ANAC58           ---     <----------DOF2     <------ZmHOX2a(1)         <---------GLK1(2)   --------->ANAC58         ----- <<<<<<LFY          <----------DOF2                <---------ARR14(2)<------ZmHOX2a(1)     ---------- ->MYB52(1) <----------DOF2  <-----------GT1<-----------HVH21 <-------TEIL<---------DAG2 <---------HSFB2a(2)   gaaacaactttgggcttataggctttaggattcacctctgcgaggctatcagggattctgaagatgcagcaggacgccttaccagctgattccaaaagaa  17412400                                                                                                 ----                                                                                                -----                                                                                   --------->HSFB2a(1)                                                                                   <---------HSFB2a(1)                                                                                   --------->HSFC1(2)                                                                                   <---------HSFC1(2)             --------->WRKY38(1)                                                  --------->ARR14(2)          --------->LBD16                <-------TEIL                             <---------ARR14(2)         --------->LBD16  <---------ANAC46                                        --------->ARR11(3)  <---------MYB46(3)      <---------ANAC58            --------->ZAT6              <---------ARR11(3) ------>ATHB12       --------->MYB52(2) --------->CCA1(2)                         <-----------ARR10 ---->GLK1(2)--------->WRKY12    --------->CCA1(2) <----------DOF2         ---------->DOF2    ------- >DOF2  <---------LBD16   <---------ANAC58   <---------ALFIN1   ---------->ID1   <------ZmHOX2a(1)   tcagtggtttccccgatgactgtaagttgcgtttgatatgagatacaacacttctttcactacgttgtcgtaatggagaaagaggaccttcgtcgataat  17412500                                                                                --------->ARR14(2)                                                                                <---------ARR14(2)                                                                             --------->LBD16                                                                             ------>ZmHOX2a(1)                                                                   =================HOX2a_HOX2a                                                                   ------>ZmHOX2a(2)                                                                  ==================HOX2a_HOX2a                                                                  <------ZmHOX2a(2)                                                          <---------ALFIN1   =================HOX2a_HOX2a                               ------>ZmHOX2a(2)        ------->GAMYB=========================HOX2a_HOX2a                        <---------bZIP60(2)            --------->ANAC46     <---------LBD16                        <---------ANAC46              -------->P --------->ARR11(3)                      <---------TGA2(2)    ==============================HOX2a_HOX2a              <--                     ----------->TGA1      ------>ZmHOX2a(1)     --------->ARR14(2)    <------ZmHOX2a(2) ----->YAB1          ----------->HVH21     ===============================HOX2a_HOX2a <---------ARR11(3) ---->ZAT6     --------->DAG2  ===================HOX2a_HOX2a    <---------ARR14(2)  <---------At4g35610 -->YAB1      ---------->DOF2--------->ARR11(3)      <-----------GT1 ------>ZmHOX2a(1)--------->ARR11(3)   actaatagctatatcggaaagtgatgacgttgatctcgtctcatcctccataattcaaccccacttggatcctgttttcctggattcagatcatctatat  17412600                                               <------MYB46(1)                                             <--------P                                            <-------GAMYB                                           <---------MYB46(3)                               <--------                                           <------MYB46(1)                       *TSS       <--------                                           <------MYB83 <---------MYB52(1)     <------NtERF2<--------                                          --------->MYB59                    <---------ANAC58   <----                                          <---------AtMYB61     <---------ARR11(3)        <---------At5g28300                                  ---------->DOF2  --------->ARR14(2)        <---------ANAC58   <----                                 --------->AHL20(2)<---------ARR14(2)        <---------ANAC46  ------ -------AHL20(2)            --------->AHL20(2) <------MYB83     --------->ARR11(3)     <---------REM1(1)   ttgattatcaaatttcaaattcaattcaaattcaataaaagagtttggttggagaaccgttgatgaaatcttaccaagggcgggagtagttgtaccgtgc  17412700    <---------ZAT18                                                       <---------HSFB2a(2)  --------->ZAT18                                             <---------DAG2  --------->ZAT14                                             <----------DOF2  <---------ZAT18                                            <---------ANAC58 -ANAC58                         <----------DOF2             <---------ANAC58 -ANAC46                      <---------ARR11(3)      <------------------------ANAC81 -ANAC58              --------->At4g35610         --------->ANAC55(2)<----------DOF2 -----ANAC58          <---------At4g35610        <---------TOE2(3) ---------->ID1 -----ANAC58         ------>ZmHOX2a(1)   <----------DOF2   <-----------GT1--------->HSFB2a(2)  <----- --->SPL7<---------CCA1(2)    --------->ARR11(3)<-----------GT1   <-----------GT1 <----------DOF2 <--   gttctgcgctcttatcttcattcctgctgtagtatctttaagtcttttgtttacgttttttttgcttttttctttttcagaagtcttttgtttttgtttt  17412800                                                              --------->AtMYB61                          <---------YAB1                      <---------ALFIN1                         --------->AHL20(2)                  --------->MYB46(3)                         --------->AHL20(1)                <---------ALFIN1                         <---------AHL20(1)               --------->MYB46(3)                         <---------AHL20(2)             <------NtERF2                        --------->YAB1                  --------->PCF2                        <---------ICU4                  <---------PCF5                       <---------YAB1                  <-----------TCP11(1)                       --------->ICU4                  <---------DEAR3(2)                  <------MYB83                         ------>NtERF2                  ----------->GT1                      <---------ATERF1(1)                  <------MYB46(1)                     <---------DEAR3(1)           <---------ANAC58                         <-----------HVH21           <---------ANAC46                        --------->O2                                  ----           <---------ANAC58                        <---------O2                     <------ZmHOX2a(2) ----AHL20(2)    --------->MYB59                   --------->TGA1a            --------->ALFIN1   ---- -------YAB1   <------ZmHOX2a(1)                   <---------TGA1a      --------->AtLEC2         ----   attcttgactcttgcgaggaaggtaattataatttgtaagcgactagtcagtctcgtcggcccaccactggtccattcaagtggggatcaaatccattca  17412900                                                                                                    <                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                               xxxxxx                                                                                               <-----                                                                                               ------                                                                                               <xxxxx                                                                                            <--------                                                                                            <xxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       <---------ARR11(3)                                                                                       xxxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       <---------GLK1(2)                                                                                      xxxxxxxxxxxxxxx                                             ------>MYB46(1)                          xxxxxxxxxxxxxxx         --------->ANAC58                    ------>MYB83  <-----------RAV1(1)        <xxxxxxxxxxxxxx         --------->ANAC58                   ----------->RAV1(1)      ---------->DOF2  xxxxxxxxxxxxxxx ----->ANAC46                              --------->AtMYB61      <-----------HVH21 <xxxxxxxxxxxxxxxx ----->ANAC58                       <---------ANAC55(2)   <---------TOE2(3)       xxxxxxxxxxxxxxxx>smallRNA(s) ----->ANAC58             ----------->GT1 --------->MYB46(3)   <---------At4g35610<xxxxxxxxxxxxxxxxxx   cgccagagaagacgcatttttggtagaattgtcaaaatatgtaaaccaacacaatacactaatgttgctgtcaaagaagaaaacaactagattttaaccc  17413000         <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->LBD16      --------->DEAR3(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ALFIN1  <-------TEIL  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ZAT14  <---------ZAT14  --------->SPL7 ---------SPL7 ------>ANAC46 ----->LBD16 ------LBD16 ---->ANAC46      --------->AHL20(1) xxxxxxxxxx>smallRNA(s) ----LBD16 <---------ARR14(2) ->GAMYB --------->LBD16 xxxxxxxxxxxsmallRNA(le3) ---GT1<---------LBD16 xxxxxxxxsmallRNA(s) xxxxxsmallRNA(s) <---------AHL20(1) xxxx>smallRNA(i) --------->AHL20(2)                                           <---------AHL20(2) xxxx>smallRNA(s) <---------AHL20(2)                                          <---------YAB1 xxxxxx>smallRNA(se3)                                                     --------->AHL20(1) xxxxxxxxxxsmallRNA(fl3)                                                  <---------AHL20(1) xxxxxxxxxxsmallRNA(se3)                                                  <---------ARR11(3) xxxxxxxxxsmallRNA(si3)                                                 <---------AHL20(2) xxxxxxxxxxxsmallRNA(le3)                                            --------->AHL20(2) xxxxxxxxxxsmallRNA(si3)                                   ------->TEIL <---------AHL20(1) xxxxxxxxxxsmallRNA(le3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(se3)                        <xxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxsmallRNA(se3)         --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(si3)      ----------->GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(le3)     <---------TOE1(3)xxxxxxxxxxxxxxxx>smallRNA(i) --------->ARR11(3) xxxxxsmallRNA(le3)--------->AHL20(2)       xxxxxxxxxxxxxxxx>smallRNA(i)--------->AHL20(1) xxxxxxxx>smallRNA(se3)     <---------TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxsmallRNA(fl3)      ---------->DOF2 ---------->DOF2<---------CCA1(2)  <---------AHL20(2)    <- xxxxxsmallRNA(si3)<---------AHL20(2) <-------TEIL <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           ----   gcggtacaccgcggaaacaatttattttttaaagttaatatacataaaagtttgcaaattgtatctatctataaaatatttttattttgtagtttacaac  17413100                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                   <---------ALFIN1                                 <---------ALFIN1                                --------->DEAR3(1)                                --------->MYB46(3)                             --------->ANAC58                     <xxxxxxxxxxxxxxxxsmallRNA(s)                    <---------ALFIN1--------->MYB46(3)                    <xxxxxxxxxxxxxxxxsmallRNA(s)                    xxxxxxxxxxxxxxxx>smallRNA(i)                    <xxxxxxxxxxxxxxxxsmallRNA(i)                   xxxxxxxxxxxxxxxx>smallRNA(s)                   <xxxxxxxxxxxxxxxxsmallRNA(fl3)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(s)                  <xxxxxxxxxxxxxxxxsmallRNA(s)                  <xxxxxxxxxxxxxxxxsmallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(i)                 <xxxxxxxxxxxxxxxxsmallRNA(i)                 xxxxxxxxxxxxxxxx>smallRNA(s)                 <xxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxsmallRNA(le3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxsmallRNA(i)                xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <xxxxxxxxxxxxxxxxsmallRNA(s)               xxxxxxxxxxxxxxxx>smallRNA(i)               ------>ZmHOX2a(1)<---------MYB55(2)              <xxxxxxxxxxxxxxxxsmallRNA(s)             <xxxxxxxxxxxxxxxxsmallRNA(s)             <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxx>smallRNA(i)           --------->ARR11(3)--------->ANAC58           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <-          xxxxxxxxxxxxxxxx>smallRNA(s)<-----------HVH21                                            --         xxxxxxxxxxxxxxxx>smallRNA(s)--------->ANAC46                                              --         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                      --         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <-----------GT1    --------->SPL7                            --------->YAB1       <xxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          --------->TOE2(3) <xxxxxxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ANAC55(2) <-----------HVH21<---------ANAC46   --------->AHL20(1)        xxxxxxxxxxxxxx     ----------->GT1xxxxxxxxxxxxxxxx>smallRNA(s)--------->AHL20(2) <---------TOE2(3)  xxxxxxxxxxxxxxx     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)----------->GT1--------->AHL20(2)--------->YAB1xxxxxxxxxxxx     --------->ANAC55(2)--------->ANAC46  <---------ANAC55(2)<---------AHL20(2)     --------->YAB1<--   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ANAC55(2)<---------AHL20(1)    <---------YAB1 ---  xxxxxxxxxxxxxxxx>smallRNA(s)------>NtERF2--------->LBD16   --------->AHL20(2)  --------->YAB1 xxxxx --------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------AHL20(2)--------->TOE2(3)  <------ ------->GT1xxxxxxxxxxxxxxxx>smallRNA(s)--------->SPL7  --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   tgttattaagtaacatcctgccaaacccgtcccgcccacccgtcccgtaaaaaaatcatttattttattaatgttaatcttatttatgatatgtttatga  17413200  Previous    Next  AGI:  At3g47250.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47200.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47200.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15956.1); contains InterPro domain Protein of unknown function DUF247, plant (InterPro:IPR004158) Range:  from: 17410862    to: 17412681    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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