Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <-----------HVH21                                                                 --------->YAB1                                <---------------AGL15       --------->ANAC46                                --------------->AGL15      --------->HSFB2a(2)                               <-----------------AGL3  <---------ANAC58                          <------NtERF2     <------NtERF2  <---------HSFB2a(2)                  -----                          --------->ATERF1(1)          <---------ANAC58                      --------                         <---------SPL7    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->HSFB2a(2)                 xxxxxxxxxxxxxxxx>smallRNA(s)         <---------HSFC1(2)                   <---------HSFB2a(2)            ---------->DOF2    ----------------->AGL3 <---------HSFB2a(1)               ------>ZmHOX2a(1)     <---------YAB1<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->HSFC1(2)           <XXXXXXXXXXXXXXXXX   --------->At4g35610  <---------ANAC58  <---------DEAR3(1)--------->LBD16     --------->LBD16------   <---------At4g35610  <---------ANAC58  <---------RAP2.3(3)--------->LBD16    ------>ZmHOX2a(1) <---------------------WRI1  ------>ZmHOX2a(1)        --------->HSFB2a(1)     ----------->RAV1(2)<---   ttgtgagatgattccaaaggccttgggcgtcctcccttatatagggggcgaatggatgcttcccgaagcatcacatcccttcctggcatccttccgaaag  17405600                                                                                                    <                                                                                                   <x                                                                                                   <x                                                                              --------->ANAC46  <xxxx                                                                             --------->MYB46(3)<xxxxx                                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <------MYB83          <------                                                                        <------MYB46(1)       =======                        ---------->DOF2                                 <---------DEAR3(2)   <-------          <---------ANAC46                                             <---------TOE1(2)     <xxxxxxx          <---------ANAC58                                            <---------MYB52(1)     <xxxxxxx          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <-------GAMYB xxxxxxxxxxxxxxxxxx       <---------MYB52(1)   <-----------HVH21     <----------DOF2   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>GT1           --------->HSFB2a(2)         ------>ZmHOX2a(1) <---------MYB46(3)    <---------- -->DOF2  <---------ANAC58--------->DAG2--------->MYB52(2)          --------->MYB52(2)    <---------ALFIN1 XXXMIR2938           <---------HSFB2a(2)<----------DOF2            --------->MYB55(2)    --------->REM1(1) --->DAG2--------->MYB52(2)----------->GT1   <---------CCA1(2)    <---------MYB52(1)  <---------MYB59 --------HVH21     ------>ZmHOX2a(1)  <---------MYB52(1)      <---------At4g35610 <---------ETT(2)xxx   gtcacatccgttccttgcatccttccgaaaggtcacatccgttctttgtatcctttggtgatgcaactgttcgttggtacccgctcgaccttacaccttt  17405700                    <---------MYB52(1)                   --------->LBD16                   <-----------HVH21                  --------->TGA1a                  --------->ANAC46                  <---------O2                                       ----------->RAV1(2)                  --------->O2                                       <---------ZAT2                  <---------TGA1a                                   --------->MYB52(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     ------>MYB83        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       ------>MYB46(1)      <---------ALFIN1 --------->At4g35610                        --------->MYB46(3)     xxxxxxxxxxxxxxxx>smallRNA(i)                                 <---------MYB111(2)  <------NtERF2  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------MYB55(2)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->ANAC46  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          ------>MYB83 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            ------>MYB46(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <---------ALFIN1 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           --------->AtMYB61 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          --------->MYB46(3)                  <-- xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     --------->WRKY12                            --- xxxxxxxxxxxsmallRNA(i)<---------At4g35610            ----------->HVH21                        ------ ----DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->At4g35610                  --------->At4g35610 ===========================bZIP_DOF    --------->STY1(2)   <---------PCF5               <---------At4g35610 --DAG2<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------At4g35610                  --------->ZAT2 xxxxxxxxxxxxxxsmallRNA(se3)----------->RAV1(1) <-----------HVH21--------->ANAC58     <------ZmHOX2a(2) xxxxxxxxxxxxxxxxsmallRNA(si3)    <---------WRKY38(1) --------->WRKY38(1)   --------------->AtSPL8--- xxx>smallRNA(se3)=================MYC_MYB     <---------ZAT6--------->SPL7 --------------->AtSPL3<-- -------AGL1<-----------HVH21     <---------WRKY12<-----------RAV1(2)--------->ZAT2  <-----------HVH21 xxxxxxxxxxxxx>smallRNA(i)-------->P    <---------STY1(2)  <---------SPL7 <-----------HVH21----------   tggccgagacacctcttcacccgtgagctaccacagtcaactagctcgagtgtcagatgaccggaccacccaactgggtcagtactcgatcagctcaccg  17405800                            --------->At4g35610                            <---------At4g35610                   <---------ZAT2                   --------->At4g35610                   <---------At4g35610                   --------->ZAT2                  <xxxxxxxxxxxxxxxxsmallRNA(s)                              --------->STY1(2)               <-----------HVH21                                            <---------STY1(2)              <------MYB46(1)        --------->STY1(2)                  --------->STY1(2)          <---------MYB46(3)--------->ZAT2                          <---------ANAC58          <-----------RAV1(1)    --------->At4g35610                <---------ANAC58        <---------At4g35610 <---------ZAT2                         <---------ZAT2                  <- -------At4g35610<---------WRKY38(1) <---------STY1(2)             --------->ZAT2                  -- ------>At4g35610<---------WRKY12<---------At4g35610              ------>MYB46(1)                  -- --->DEAR3(1) <------MYB83 ------>MYB83                           ------>MYB83                     <- ------>ZAT2  <---------MYB46(3) <---------ZAT2                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------ZAT2<---------MYB52(1)   --------->ZAT2           --------->At4g35610           ------>ZmHOX2a(1) ->HVH21<---------ZAT2     ------>MYB46(1)                <---------At4g35610          <xxxxxxxxxxxxx   agctcagtcgagctgttggtcagctcacctagctgagctagctagtcttccatctggtttagctcacctagcttagctagctagttcatcctagtttgtc  17405900        --------->STY1(2)        <---------STY1(2)                                                                    --------        --------->ZAT2                                                                      -------->P        <---------ZAT2                                                                    xxxxxxxxxxx       ------>MYB46(1)                                                                 <xxxxxxxxxxxxx       ------>MYB83                                                      *TSS          xxxxxxxxxxxxxx --------At4g35610                                                 xxxxxxxxxxxxxxxx>smallRNA(i) ------->At4g35610                                                 <xxxxxxxxxxxxxxxxsmallRNA(i) ------->ZAT2    <---------At4g35610                            <---------WRKY18(1)   xxxxxxxxxxxxxxx --------ZAT2    --------->At4g35610                         <---------ANAC58        ------>ZmHOX2a(1) xxxxxxxxxxsmallRNA(se3) <----------DOF2                     <---------ANAC58       --------->TOE2(3)   cagctcacctagctggttcagcttgaactttctcgttcttccgactaagtattttagtccatttcttgaccatggtctagttttttcctaaaacaacctg  17406000                                                                               <------ZmHOX2a(2)                                                                              <---------ARR14(3)                                                                              --------->ARR11(3)                                                                              <-----------ARR10                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                              <---------ARR11(3)                                                                              --------->ARR14(3)              <---------SPL7                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              ----------->HVH21                                       <---------ANAC46             --------->LBD16                                          --------->ALFIN1           --------->TOE1(2)                                        <---------ANAC58           <---------LBD16                                          <---------ANAC46         ------->TEIL                                               <---------ANAC58<---------ANAC58      <---------YAB1                                          --------->ARR14(2)    <---------ANAC58  <----------DOF2                  -------->P                 <---------ARR14(2)------>ZmHOX2a(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                     <---------HSFB2a(2) <---------AGP1 --->RAV1(2) xxxxxxxxxxxxxxxx>smallRNA(s)                 ============================HOX2a_HOX2a   - xxxxx>smallRNA(i)     --------->MYB52(2)                 =============================HOX2a_HOX2a<-- xxxxxxxxxxsmallRNA(le3)<-------GAMYB                     --------->HSFB2a(2) --------->AGP1     <--- xxxxxxxx>smallRNA(se3)----------->GT1                    ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxx>smallRNA(se3)<---------MYB46(3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<--------   gcctctttatgaacgcgggacgcggtcgttacaagtctacccccttaaactgaattcgtcctcgaattcggcgtgtgtaagatcttgcttactccctaac  17406100                   --------->ARR11(3)         --------->ANAC58   <---------ZAT18              ----------->GT1         --------->ANAC58   --------->ZAT14          <---------AHL20(2)     --------->ANAC58   <---------ICU4          <---------MYB52(1)     --------->ANAC58   --------->ATHB12       <----------DOF2 ---------->HVH21  <---------ARR11(3)         --------->TOE2(3)              <-----------GT1 -------LBD16      --------->ARR14(2)       <-----------GT1                <-----------GT1 ------LBD16       <---------ARR14(2)       ---------->ID1              <---------YAB1        ------- -MYB59 ------->TEIL   <---------YAB1      <-----------GT1         ----------->GT1         <---------   tcgggacacggacgttacaagtatcttcattgcacaactctattttttcctttattttatagtaaaaataggttatttttctccattgtatgtctttaaa  17406200                            <---------HSFB2a(2)                            --------->HSFB2a(2)                         --------->ARR11(3) <---------ZAT6          --------->GLK1(2)       <---------ZAT6                      <---------HSFB2a(2) ----------->GT1         <---------ARR11(3)      ----------->GT1             <-----------GT1  ------- -->AHL20(2)      <----------ID1   <-----------GT1                         <---------AHL20(2) ------- -DOF2         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     ---------->DOF2   <---------AHL20(2)   <------   atagagttacttcaaaaatagagacaaaatctagaaattactctatatatagagtaaaaaagaaaactattctatattttttctattttagaagaaaatc  17406300                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                          --------->GLK1(1)                                                                                         --------->ARR14(2)  <-----------GT1                <---------AHL20(1)         --------->DAG2           <-------TEIL<--- -->GLK1(2)                   --------->YAB1   ----------->GT1       --------->TOE1(2)   <---------ARR14(2) -->ARR11(3)     --------->DAG2  --------->AHL20(1)        ---------->DOF2  <---------ARR11(3)  ----- ---ARR11(3)    ---------->DOF2  <---------ARR11(3)   --------->AHL20(2)    --------->ARR11(3)  -----   tattttacagacatgaaataaagcaaaatcaacaatattttctgtagcacagaaaaaaaaataaagttgaacattggagataatcgatgcatatatccaa  17406400                                                                                                  <--                                                                                              <------NtERF2                                                                                              ------>NtERF2                                                                                             --------                                                                                             --------                                                                                             <-------                                                            ------->GAMYB                   <-------TEIL                                                            --------->YAB1                <---------ARR14(2)       <---------AHL20(2)                                   --------->AtMYB61             --------->ARR14(2)       --------->AHL20(1)                                  --------->MYB46(3)            <------MYB46(1) --------->YAB1                                            <---------MYB55(2)            <------MYB83 ---->GAMYB                                                <---------ATHB12             <---------TOE1(2) ------>YAB1<---------AHL20(2)                   ------->TEIL<-----------HVH21          ----------->ARR10 ----->MYB46(3)      ------>MYB46(1)            <---------AtLEC2                        --------->MYB59 ------ATHB12        ------>MYB83     <---------ARR11(3)  -------->P                  --------->TOE2(2) --->P <---------AHL20(1)             --------->ARR11(3)  ------>MYB83              ------>MYB46(1) ------MYB55(2) <-----------GT1     <---------YAB1        ------>MYB46(1)           ------>MYB83  --- ->MYB83<---------YAB1      ----------->GT1<---------WRKY38(1)    ------->MYC3     --------->MYB52(1) ->MYB46(1) --------->AHL20(2)      <---------TOE2(3)------->TEIL <-------MYC3    --------->AtMYB61   ccatcatattatatttatataccaaatgaaacgttactaagatagtcaatgcatgtatccaaccatcacatgcccaactcaagaccaacgtaggtccgcc  17406500  Previous    Next  AGI:  At3g47240.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54926.1) Range:  from: 17404846    to: 17405973    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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