Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->ANAC58                  <---------CCA1(2)                            --------->bZIP60(2)            ------>ZmHOX2a(1)                                  --------->ANAC58             ---------           --------->TOE2(3)                                   --------->ANAC46            --------->DAG2       <---------GLK1(1)                          <---------ARR11(3)   <----------DOF2    ---------->DOF2       --------->GLK1(1)                        --------->ANAC46    ------>ZmHOX2a(1)   <------ZmHOX2a(1)      <---------ARR11(3)                        --------->ANAC58<-------PIF5         <---------HSFB2a(2)      --------->ARR11(3)                --------->TOE1(3)    <---------ALFIN1        --------->HSFB2a(2)    <---------TOE2(3)        <---------ATHB12   --------->ANAC58------->PIF5   --------------->AGL15 ->ZmHOX2a(1)<---------CCA1(2)          --------->TOE2(3)  ------>ZmHOX2a(1)   ======================   cagaataagatttccttatcttatcttccaaatcaactacagccttaaccaagacattttcctccacgtccttcttttttgcctcgtctaggaaaagctg  17389800                        <--------HAHB4    <---------At5g28300                        --------->ATHB12  <-----------------AG                       <---------ATHB12   <-----------------AGL1                 <-------GAMYB           <-----------GT1              <---------At4g35610    <----------DOF2        --------->MYB52(1)         <---------ANAC58           <---------ANAC58     <<<<<<<<<<<<<<<<<LFY         <---------ANAC58           <---------ANAC58    <------ZmHOX2a(1) >GLK1(2)<---------ANAC46          <-------TEIL   --------->YAB1               <----------DOF2 ===========================================================MADS_MADS   <----------DOF2<----------DOF2   tagaagccgaggcttgtgctgttgaatcatttggaggtgcttttcaccgtaatggtaaggaccaatggaaacaactttgggcttataggctttgggattc  17389900                                                --------->ZAT2                                                <---------ZAT2                                                <---------At4g35610                                                --------->At4g35610                                                ----------->RAV1(2)                                            -------->P                                          ------>ZmHOX2a(1)                            <------ZmHOX2a(1)                                         <---------ANAC58                          ------>ZmHOX2a(1)                                     <---------GLK1(2)                     ------>ZmHOX2a(1)                               ----------->RAV1(1)                        <---------ANAC58                               =============================RAV           <---------ANAC58       ------->TEIL          <-------TEIL<---------ANAC58      --------->ANAC58    --------->LBD16  - --------->TOE1(2)     ---------->DOF2--------->GLK1(2)        --------->ANAC58  ----------->RAV1(2)<   aatgctacgaagctctcagggactctaaagatgcaacaagattccttaccagctgattccaagagaagcactggttccttacttcctgaggataagtagt  17390000                            <----------DOF2                         --------->GLK1(2)                <---------DEAR3(1)                                                                  <                <---------AtMYB61                                                                   <                --------->ALFIN1                                                                   --              <---------MYB46(3)                                                           ------>ZmHOX2a(1)             <---------AtMYB61                                ---------->ARF1           =============             --------->ALFIN1                       <-----------GT1  <---------YAB1     <------ZmHOX2a(2)          <---------AtMYB61 <---------DAG2          --------->ARR14(2)                 --------->ARR14(2)  ---------->DOF2<---------MYB46(3)                 <---------ARR14(2)                 <---------ARR14(2) -------->HSFB2a(2)--------->ALFIN1              --------->AHL20(2)  --------->ICU4    --------->ARR11(3) ---------HSFB2a(2)<---------ANAC46   <---------At4g35610<---------MYB52(1)     --------->ZAT6<------   ttctgaaagcagatggtggtggtggagaagctttatcggaagatgatgaaattatatccgtcttgtctgccatgattttgttccactacgatcctccttt  17390100                                        <---------AHL20(2)                                       --------->AHL20(2)                   --------->ARR11(3)      -             --------->DAG2        --------->AHL20(2)                       <---------ARR11(3)      <    <-------TEIL       <---------ARR14(2)                 --------->HSFB2a(2)                      <- ---------TOE2(2)      --------->ARR14(2)                 <---------HSFB2a(2)              <---------YAB1 ---------TOE1(2)   <---------TOE1(2)--------->YAB1       <---------HSFC1(1)--------->GLK1(2)      -- ---->ZmHOX2a(1)   <------NtERF2  --------->YAB1--------->ARR11(3)          <-----------ARR10  <----- =====HOX2a_HOX2a<---------DEAR3(1)<---------AHL20(2)--------->ATHB12  ----------->GT1<---------MYB46(3) ----DOF2  ---------->DOF2       <---------YAB1 <---------ARR11(3) ---------->DOF2 <-----------RAV1(1)   cctaggttcaaagaaaaggtcgtcggattcaagttataaaaataaatcgagatattgattcgagaaaaatagagcgaaaatcttactgttgttgtgagtg  17390200                                                  --------->ALFIN1                                                <---------ZAT2                    <---------At4g35610         --------->ZAT2             --------->ARR11(3)                 <------MYB83        <-----------HVH21                       <------MYB46(1)   <----------DOF2 -------->At4g35610 *TSS                        --------->At4g35610                                 < -------GAMYB<---------ARR11(3)                 <---------At4g35610        <----------DOF2   -------- --------MYB46(3)   --------->At4g35610       <-----------RAV1(2) <---------DAG2   <---------AHL20(2) ------->MYB52(2)<<<<<<<<<TBF1      --------------->AGL15  --------->KAN4(2)  <---------------------- ----ZAT6<---------MYB52(1)        ----------------->AGL1<-------TEIL   <-----------GT1<---------AHL20(2)   ttagttgaaccgtgagttcttcttctgccttactcttgcctcttagaggcaggtgagggttcattctccttttttttctttgtttttatttttttgtctt  17390300                     <---------ICU4                 <---------AHL20(2)                         <------ZmHOX2a(1)                   -----                 --------->AHL20(2)                  --------->ICU4                             <----                <---------AHL20(1)                  <---------TOE2(3)    <---------ANAC58       -----                <---------AHL20(2)              --------->CCA1(2)        <---------ANAC58       <---- ---------AHL20(2)  --------->ICU4     ----------->GT1    <---------TOE2(3) <---------TOE1(2)  <----- -->ID1         --------->AHL20(2)     --------->YAB1<---------YAB1      --------->MYB52(2)    <----- --ANAC81 ----------->GT1        --------->YAB1<---------ARR11(3)<---------AHL20(2)  --------->ZAT6   attttttctaatgggtaatttaattagtagtctaattagaatggtaatagatataatgtttaggaatttttttgttcgtgggtcttaccactgaggcagg  17390400  --------------->AGL15  <---------------AGL15 ---->ARR11(3)         --------->ANAC58 -----ARR14(2)         --------->ANAC55(1) ---->ARR14(2)         --------->ANAC55(2)                                      --------->ZAT18 -----ARR11(3)         --------->ANAC58        <---------TOE1(3)      <----------DOF2 -MYB83  <---------ANAC55(2)      <---------LBD16      <---------TOE2(3)   ---------->DOF2         -- -MYB46(1)             --------->ANAC46        <---------TOE2(3)  --------->MYB46(3)      --------->YAB1   tcttcttaaataagtaaaccaatacacgttataaaactcggaaaatatgaaggttttgatgtttttcaacgactttccaaagtgcaaagtatttataaaa  17390500                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                             --------                     ----------->GT1                                                         <-------                    --------->ALFIN1                                                         <-------                    <------NtERF2                                                            --------                  <---------bZIP60(2)                                                       ---------                  <---------ANAC58                                                  <---------HSFB2a(2)                  <---------ANAC58                                           ---------->DOF2<--------         --------->YAB1                                                 <----------ID1  ---------->DOF2        <---------YAB1                                          --------->DAG2      --------->HSFB2a(2)     <---------MYB52(1)                 ----------->GT1        ---------->DOF2     <---------LBD16 ------->MYB46(3) <---------ANAC46  ----------->GT1  --------->TOE1(2)----------->GT1--------->LBD16   aaccatcgttatgatatatggcgtggaaaatttagagagagtaagaaaaaaaaaacatgagaaaataaagtattgtgacaaaagttcgggaaaagatatc  17390600     ------->TEIL -->ARR11(3) ---ARR14(2) -->ARR14(2) ---ARR11(3) ->CCA1(1) ->RVE1(1) --RVE1(1) --GLK1(1)                    --------->DAG2 ->GLK1(1)                   ---------->DOF2                                             ----------->GT1 >ARR11(3)        <---------YAB1                                                       ---------->DOF2 -ARR11(3)     <---------AHL20(2)--------->ALFIN1           ---------->DOF2          <------NtERF2   tgcgatgtatttgggaatttatgaaacaagttaaagtggaagaaatagaaaatggctgttttaaaagaaacatgagtcgaagtagtcggcaaagtaacta  17390700  Previous    Next  AGI:  At3g47200.1    Description:  Identical to UPF0481 protein At3g47200 [Arabidopsis Thaliana] (GB:Q9SD53;GB:Q56YU5); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47250.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47250.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15956.1); contains InterPro domain Protein of unknown function DUF247, plant (InterPro:IPR004158) Range:  from: 17388572    to: 17390220    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version