Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->TOE1(1)                                                                             --------->TOE2(1)                                                                             --------->ANAC46                                                                            ------>ZmHOX2a(1)                                                                            =========================                                                                           <---------ANAC46                                                                        --------->ARR14(2)                                                                     <---------ICU4      <---------ANAC55(2)                                         --------->WOX13(1)      --------->ANAC46                                          <---------ZAT18                    -- -----ANAC58                                                    --------->ZAT18                  ==== -----ANAC58                                                   --------->ANAC58                  <--- -----ANAC46                    --------->MYB52(1)             --------->ANAC58 --------->SPL7<------NtERF2 --TEIL       --------->GLK1(1) <---------ALFIN1     <---------GLK1(1)  <---------ARR14(2)  <-------- -----------WRI1       <------ZmHOX2a(1)        --------->At4g35610 <---------ATHB12        ---------   gttcaaacacgtagagatttcaataggagttagcccacggttttcgactccgatgaaatctccaagcgcaatcagttcctcgtaagacaattggtcggga  17384100                                                                  --------->ANAC58                                                                  --------->ANAC58                                                                  --------->ANAC46                                            <------MYB46(1)  ------>ZmHOX2a(2)                                 ------>ZmHOX2a(1)     <---------ANAC58                              ------>ZmHOX2a(1)    <---------ANAC58                         --------->YAB1     <------MYB83   --------->ARR11(3) ===HOX2a_HOX2a         <---------ATHB12  <--------P<----------DOF2        <---------WOX13(1) ------->WOX13(1)  --------->ANAC46    <---------TOE2(3)   <---------ARR11(3)--------->ATHB12 =====================HOX2a_HOX2a===================================HOX2a_HOX2a   <---------ANAC58  < ---ZmHOX2a(2)     --------->ANAC58 ------>ZmHOX2a(1)  <---------ANAC58  --------->ATHB12     ------- -LBD16            --------->ANAC58 ================================HOX2a_HOX2a   <---------ANAC58  - >ETT(1)       ------>ZmHOX2a(1)<---------ALFIN1   <---------ANAC58 <---------GLK1(2)     <---------At4g35610   tcaatctcatcttcttcctccaagaaatcatcctcctcctcaaggttggaattgctttcttgatcttcaagaaactcattgatttcgtcttcatctactc  17384200                                                                                     -------->ATHB1                                                                                     --------->ATHB12                                                                            --------->YAB1                                                                     <----------DOF2 <---------ICU4                                                                <-----------HVH21   --------->ICU4                                                                <-----------TGA1    <---------ATHB12                                                               --------->ANAC46     <---------YAB1                                            <<<<<<<<<TBF1 --------->GLK1(2) --------->ATHB12 ---------ARR14(2)                   --------->ATHB12    <---------ARR14(2) -------->ATHB1 -->ANAC46  --------->YAB1         <---------WOX13(1)    <---------GLK1(2) <---------YAB1 -------->ARR14(2)              <---------YAB1           --------->ARR14(2)<---------ATHB12   caaatccattgctatcgaaatactcgtagtagttctcattgatttcttcttcatcttcagattcttcgtcactttctatcattgaaatcattgagggaga  17384300                                                                                       --------->HSFB2a(2)                                           --------->At4g35610          ---------->DOF2<---------HSFB2a(2)                                           <------NtERF2         <---------ANAC58     <---------LBD16                                        --------->ATERF1(1)      <---------ANAC58     ------>ZmHOX2a(2)                                        <------NtERF2       <---------ARR14(2)      <---------AGP1    --------->AtLEC2                   <---------ATERF1(1)  --------->ARR14(2)      --------->ARR14(2)  --------->YAB1                <---------ANAC58            --------->GLK1(2)       <---------ARR14(2) <---------ATHB12               <---------ANAC58           <---------GLK1(2)      ----------->ARR10   cgaatcatgcatagcatgggcaaaatgggaattagcttgggaggcagcaagagcaacttcagaatttgcttgctcaaagagggctagatcgggaagtttg  17384400                                                                                       <---------AHL20(2)                                                                                   <---------GLK1(2)                                                                                <---------HSFB2a(2)                                                                            --------->ZAT2                                                                            <---------ZAT2                                                                            --------->At4g35610                                                                            <---------GLK1(1)                                                                            --------->GLK1(1)                                                                            <---------At4g35610                                                                       --------->At4g35610        <---------ANAC58                                            <------ZmHOX2a(1) --------->AHL20(2)        <---------ANAC46                                          --------->MYB59--------->LBD16        <---------ANAC58                                     <---------TOE2(3)  --------->HSFB2a(2)     <--------P                                              <---------YAB1----------->ARR10    <-------GAMYB                                       <---------ZAT6 <---------At4g35610   <---------MYB46(3)                      --------->YAB1    <---------TOE1(3) <---------LBD16   tttggaggttgcttaggctcttcttcttggttatccattagagaagaataagtagattgtgttatggttaggaagccgagctccggaattttatatgaaa  17384500                                                            --------->SPL7                                                         ============================================                                                         <---------------AGL15                                                         <---------ANAC58                                                         <---------ANAC58                                *TSS --------->ICU4      <---------ANAC46                                --------->ANAC58        --------------->AtSPL3                            ----------->RAV1(1)     --------->At4g35610                           <----------ID1           <---------At4g35610                          ----                         --------->ANAC46      --------->ZAT18---------->DOF2                    <---                ----------->GT1 --------->ANAC58    --------->ZAT2                              <----        <-----------HVH21--------->ANAC58      --------->ETT(2) ----------->GT1                 -----  <----------DOF2        --------->ANAC58 <------------CBF--------->LBD16            --------->LBD16 <---------ANAC58    --------->ANAC55(2)------->TEIL<---------ZAT2       ---------->DOF2     <------- <---------ANAC58    <---------ANAC55(2)<---------YAB1------------------>SPL14     <---------LBD16   atggctttcatgtcagagaggttacttaagcaacaagaaatgaatattgtggacagcttccgtacaaagtaatacaaaagaaacatgcggaagttagggt  17384600            --------->YAB1         --------------->AGL15         <---------------AGL15     ---------->ID1    <------------CBF ------>ZmHOX2a(1)    <---------ICU4                                                               -- <----------DOF2     --------->ICU4                                                                <- ========================MADS_MADS                                                                 -- ----->ARR14(2)      <---------ARR14(2)           --------->MYB59                                  <- ------ARR14(2) --------->ANAC58                <---------ATHB12  <---------MYB52(1)               <- -----GLK1(1)   --------->ANAC46              --------->WOX13(1) --------->TOE2(3)                <-- ---->GLK1(1)   --------->ANAC58          <-----------GT1        --------->TOE1(3)         ---------- --TOE1(3) <---------YAB1            <---------AHL20(2)   ------->TEIL <----------DOF2---------->DOF2   atcctttttcgctattataagcaaatattgcataagttttaaatttgccaatcaggtatgcattttcccttaactttgggtttgcgaagaaagaaaagtc  17384700             --------->At4g35610             XXXXXXXXXXXXXXXXXXXX>MIR862-3P          --------->CCA1(2)         --------->ARR14(2) ------->ARR11(3)       --------->TOE2(3) --------ARR14(2)       <---------MYB59 ------->ARR14(2)     -------->P                                                             ------>MYB46(1) --------ARR11(1)     ------->TEIL <---------ARR14(2)                                        ------>MYB83 --------ARR11(3)  <---------At4g35610          ----------->HVH21--------->AHL20(2)       --------->MYB46(3) -------CCA1(2)   ------->TEIL    <---------GLK1(1)        ------>ZmHOX2a(1)            <-----------GT1 >DOF2   <---------ARR14(2) ---------->DOF2   <---------AtLEC2   <---------AHL20(2)<---------ANAC46   atatcttggacgatatgctgcatctacctaaaaagcatttctgagaatgcatgacatattcctctatatatatagaaattcacttgtgtataaccagcct  17384800                                                           <---------YAB1                                                         --------->AHL20(2)                                                         <---------AHL20(2)                                                 --------->AHL20(2)                                                 <---------AHL20(2)                                                 <---------YAB1                                              <---------AHL20(1)                      --------->YAB1                                              <---------ARR11(3)                    <---------ANAC55(2)                                              --------->AHL20(2)                    <---------ANAC46                 <----------DOF2              --------->AHL20(1)              <---------AHL20(1)          --------->TOE2(3)         <---------ANAC58    <---------AHL20(2)    --------->AHL20(1)  ---       --------->YAB1               <---------ANAC46 --------->AHL20(2)       <---------ARR11(3)-----    --------->WOX13(1)              <---------ANAC58<---------YAB1            --------->AHL20(2)-----   aatagacaatcacattaaacttttgttctgactaaatcgcttgtactatatattattatttatttttgtgcaaaatactatatattacttataatctata  17384900                       <---------AtMYB61                     --------------------->WRI1                  <------MYB46(1)                  <------MYB83                        --------->DAG2                            <----            <---------AHL20(2)                       ---------->DOF2                         <-------            <---------YAB1                        <------ZmHOX2a(1)                         <--------           <---------AHL20(1)               <---------YAB1                          ------>ZmHOX2a(1) ------>ICU4--------->AHL20(2)           <---------YAB1----------->GT1 --------->KAN4(2)    --------- ----->DOF2--------->AHL20(2)           <---------GLK1(2)   <---------ARR11(3)     --------->TOE2(3) ---->YAB1 --------->AHL20(1)           <---------ARR11(3)  --------->ARR11(3)   ------>ZmHOX2a(1)   aagattaaaacaatataatttggttttggtggtatcgaacaagattattagaggaaaaagtatatattcagtttattcttctcctccttagtaattttat  17385000  Previous    Next  AGI:  At3g47180.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G19910.1); similar to hypothetical protein OsI_029129 [Oryza sativa (indica cultivar-group)] (GB:EAZ07897.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 17383785    to: 17384532    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version