Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                 <---------HSFB2a(2)                                                                                 --------->HSFB2a(2)-                                  ----------->HVH21               --------->CCA1(2)           -------                       --------->GLK1(1)                         <---------ARR11(3)          --------                   <---------HSFB2a(2)                           --------->ARR11(3)         ---------                   --------->HSFB2a(2)                   <---------ICU4         =====================                  ------>ZmHOX2a(2)                      --------->ATHB12       <-----------------AGL3        --------->MYB46(3)  <----------DOF2             <---------YAB1     ------>ZmHOX2a(1)---------   cttagtctgaacaactgtgatcgagaaaccctttaagtgaagggttttggcaagttgcatcattggagatatatgtccttgtgctggaaatggaaccaac  17201800                                                                               <---------MYB46(3)                                                                        <---------At4g35610                                                                        --------->ZAT2                                                                        <---------ZAT2                                                                   --------->ZAT2 ---->ZAT6                                                         <---------ZAT2 >MYB83                                                            <---------At4g35610 >MYB46(1)                                                    --------->ARR11(3) -->P                                                         <---------ARR14(2)        <---------ARR14(2) -------->ZAT14                                        <---------AHL20(2)   <---------ANAC46 ---->RAV1(1)                                          --------->AHL20(2)  <-------TEIL --------->ARR14(2) ->AtMYB61                     ----------------->AG <---------ICU4------>ZmHOX2a(1) <---------LBD16 >MYB46(3)              ------>ZmHOX2a(1)          --------->ICU4 ===================================HOX2a_HOX2a ================================================MADS_MADS    --------->ARR14(2)<---------SPL7 >DEAR3(2)        <----------DOF2        <---------AtLEC2---------->DOF2--------->At4g35610   <------ZmHOX2a(2)   actacgcttctccttgcaggcttttcctccattcccaaaacctgcatgaactactaattaaaagtatcctgctcagcttcgtggttcgcggtttcgatca  17201900                                                                                      <-----------GT1                                                                                   ----------->GT1                                                                                 <------MYB83                     --------->At4g35610                                         <------MYB46(1)                    <---------ARR14(2)                                          <---------AtMYB61                   --------->RVE1(1)                                         --------->MYB55(2)               ---------->DOF2    --------->HSFB2a(1)                        <---------MYB46(3)              <---------AHL20(2) <---------TOE1(2)                          <---------ANAC46      <------------MYB.PH3(1)--------->HSFB2a(2)     <-----------TGA1     <---------ANAC46      --------->MYB46(3)     <---------HSFB2a(2)     <-----------HVH21   --------->ALFIN1   ----------->HVH21--------->ARR14(2)              --------->ANAC46     <---------AtMYB61    <------ --------->HSFB2a(2)--------->GLK1(2)  <-----------RAV1(1)           --------->YAB1<---------ZAT6   <   cttcggtaaccgatatataaagtatctgactctcgaacgttttgttggctctcttcgtcacaacatgtgaatcatgtggtggatggtgttacatttcttt  17202000                          --------->ANAC58                          ----------->GT1                          --------->ANAC58                         --------->DAG2                        ---------->DOF2                   ---------->DOF2                                    <----------DOF2                 --------->MYB46(3)                          ------>NtERF2 ----DOF2   ----------->GT1                                  --------->LBD16                       <- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       --------->RAP2.6(2)---------->DOF2-------   atcttgttagagagtggtaaccaaagaaaagcaaaaatgctattgtcttcttggttctcttgccgcatttcgcttcatgtcaaaagaggcttcaaacaga  17202100                                            ---------->DOF2                                       <-------MYC3                                       ------->MYC2                                       <-------MYC2                                      <---------ANAC58                                 <---------AtLEC2                                      <---------ANAC58                            <---------ICU4                          --------------->AGL15                                   <---------ARR14(2)                          <---------------AGL15                                   --------->ARR14(2)       <----------DOF2--------->WOX13(1)   XXXXXXXXXXXXXXXXXXXX>MIR399F        --------->YAB1 --------AHL20(2)   <---------At4g35610------->MYC3 *TSS         --------->ATHB12<---------YAB1 ---->GT1    <-----------RAV1(1)     <-----------------------TaNAC69(2) <------------CBF   aaaaattgtctttttctggtgcagcaatctatattgagaaacgtgccaaaggagataaactcgtgtttgatttgaattgcatcatatttgcattacaaaa  17202200             <-----------GT1            --------->ZAT14            <---------ZAT14           <---------DAG2                        --------->YAB1           <----------DOF2                       <--------ATHB1          --------->ANAC46                       --------->ATHB12       <-------TEIL                         ------------>CBF            --------->TGA1a    <---------ANAC55(2)                ------------>CBF   --------->ARR11(3) <---------ZAT18       <-    --------->ANAC58           --------->HSFB2a(1)      ---------->TaMYB80  <---------ANAC46       <-    --------->ANAC58           <---------HSFB2a(1)    <------ZmHOX2a(1) <---------TGA1a       <------   --------------->AtSPL8    <---------ANAC58   <---------ATHB12      <---------ALFIN1      ---------   --------------->AtSPL3    <---------ANAC58   <---------YAB1 <---------GLK1(2)       <-------TEIL<-   tagaacacgtacactttactctctaagtttggcatgttccatacaattcaatgataggaatatcaggttctcacacttgtgtacattgattcattcatgt  17202300                              ----------->GT1    <---------ARR11(3)                           <---------ANAC58      <---------ARR14(2)           --------->MYB52(1)--------->ALFIN1    --------->ARR14(2)          ----------->HVH21<---------ANAC55(1)   --------->ARR11(3) --------ANAC58            <---------ANAC58      <---------AGP1 --------ANAC46            <---------ANAC46     <---------CCA1(2) -----RAV1(1)         --------->ATHB12-------->HAHB4                                                < >YAB1---------->ID1  <---------ICU4  --------->ATHB12  <-----------GT1          ----------->HVH21  < --------ANAC58  --------->ZAT14     --------->ICU4------>ZmHOX2a(2)<---------ATHB12           <-----   tgcgttttgtccctaacagtttagttattgcgtggtgaaatgatggagttggatcttgtcacaatttcaaatgaatgaagaaactgacatttccattata  17202400                                                                                               <-----                                                                                               ------                                           <-----------GT1                                     ======                                           <---------DOF5.7(2)                              <------ZmHOX2a(2)                                         --------->DOF5.7(2)                               <---------ARR14(2)           --------->YAB1               --------->TOE1(3)                                  --------->ARR14(2) --------->GLK1(2)                      <----------DOF2                               --------->DAG2< ---------GLK1(2)--------->ZAT6         --------->TOE2(3)                           ---------->DOF2 - ---------ARR14(2)                  --------->REM1(1)                           --------------->AGL15 ------GT1<---------YAB1       --------->ZAT6                                   <---------------AGL15   ccgattctgaaaatgataaacactaatttgttgtcactacaactttaacgtctctaacgagcatttcatcgaacaccatctactaaaaaaggcgatcctt  17202500                                              ----------->GT1                                         ------->PIF5                                         <-------PIF4                                         <-------MYC3                                         ------->MYC2                                         <-------PIF5                                         <-------MYC2                                         ------->PIF4                                         ------->MYC3                                        --------->ANAC58                                        --------->ANAC58                 --------->ICU4        ------->TEIL            <------MYB46(1)            ------------>OsbHLH66           <---------AtMYB61          <------------OsbHLH66         <-------GAMYB                <---------ALFIN1                                         ------        <---------MYB46(3)          --------->ANAC46                                          -------     <---------WRKY18(1)            --------->ANAC58                                          <------  <---------ICU4 <---------YAB1--------->ANAC46                                           --------->LBD16  ------>ZmHOX2a(2)            --------->ANAC58             --------->LBD16              <---------LBD16 -----DOF2<---------MYB52(1)   ----------->HVH21           <---------LBD16              <---------LBD16 >ZmHOX2a(1)<------MYB83       --------->ANAC58  >>>>>>>>>GT-1                         --------->MYB52(1) ========HOX2a_HOX2a          --------->SPL7  <---------MYB46(3)                      <---------ARR14(2) ---------ARR11(3)  <---------YAB1  --------->ANAC58      <---------LBD16       <---------HSFB2a(2) -------->ARR11(3)<---------ICU4 <---------REM1(2)       ------->TEIL           --------->HSFB2a(2)   ttgatcttgaccgttggtcatgatgaaaaccagacgacacgcacgcgctggttaatatgaaccgggagtctgagaagtggttttagaaaaaccgggacat  17202600                                                                                        ----------->RAV1(1)                                                                                       ----------->HVH21                                                                                    ------->PIF5                                                                                    <-------PIF5                                                                                    --------->TOE2(2)                                                                                    --------->TOE1(2)                                                                                   =================RAV                                                                                   ==================                                                                                   <---------ZAT2                                                                                   ----------->RAV1(2)                                                                                   --------->ZAT2                                                                                  ------>MYB46(1)                                                                                  ------>MYB83                                                                                  -------->P                                                                                --------->MYB46(3)        <---------GLK1(1)                                                     --------->ARR14(2)        --------->GLK1(1)                                                     --------->PCF2     --------->ANAC58                                                         <---------ARR14(2)     --------->ANAC58                                                    -------->P--------->TGA1a     --------->ANAC46                                 <----------DOF2    ====================MYC_MYB --->KAN4(2)               ------>ZmHOX2a(1)          =======================================bZIP_DOF -->HSFB2a(1)           ------>ZmHOX2a(1)            *TSS         <-----------GT1<---------ALFIN1 <-- ---HSFB2a(1)  ------>ZmHOX2a(1)       ----------->GT1<---------DAG2--------->ZAT6--------->MYB52(1)   tcggttcaagaaatctcctcgtcttcctcctccaaaacaaaatgtcaaaatccctcctttatcggtttttacactaaccagacccacctgcgacaatttt  17202700  Previous    Next  AGI:  At3g46658.1    Description:  other RNA Range:  from: 17199855    to: 17202152    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g46660.1    Description:  UDP-glucoronosyl/UDP-glucosyl transferase family protein. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46670.1); similar to unknown [Populus trichocarpa] (GB:ABK95496.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) Range:  from: 17200249    to: 17202152    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g46666.1    Description:  unknown protein Range:  from: 17202583    to: 17202878    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g46668.1    Description:  other RNA Range:  from: 17202653    to: 17206265    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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