Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->ANAC46           <----------DOF2          --------->HSFC1(2)                                                      --------->ANAC58          <---------HSFC1(2)                 --------->ARR11(3)               --------->ANAC58          <---------HSFB2a(1)                <---------ARR11(3)     --------->ANAC58         <-------          --------->HSFB2a(1)              <---------ZAT6           --------->ANAC58 ---------->DOF2 ----->ANAC58         xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->ANAC58  --------->ANAC58 ----->ANAC58     <---------MYB52(1) ------->TEIL               --------->ANAC58---------->DOF2  <--- ----->ANAC46   ------>ZmHOX2a(1) <---------REM1(1)        --------->MYB52(1) --------->ANAC58   ----   cacaaaaacagaactttcctgttactcgaaacgaagatgaagctagagatactactactactaccgaagcaagcctgttcaagaaagcaaagtctctttc  17173100   <---------ZAT6                                              ---------->DOF2 ---DOF2                                                ------>ZmHOX2a(2)                       <---- ------HSFB2a(2)             <---------KAN4(1)    --------->YAB1                                <---- ----->HSFB2a(2)             --------->KAN4(1)   <---------ATHB12         <----------DOF2   ---------   tagtagtcttagggctaactacaaaacaagaacaatccaactcaaattccaatcttgatccaactaaaagaccagactttaatggcaaaatgcttaaagc  17173200                                         <---------AtLEC2                                  --------->ANAC58                                         <---------ANAC46                                  --------->ANAC58                                    <---------REM1(1)                         ---------->DOF2    <----------DOF2              <---------MYB52(1)                    --------->ANAC46 ------->GAMYB ------->TEIL                  <---------ANAC58       ---------->DOF2  --------->ANAC58--------->ANAC58 -----ANAC58                   <---------ZAT6     <-----------HVH21    --------->ANAC58--------->ANAC58 -----ANAC58               <---------MYB52(2)    ----------->GT1     <-----------GT1 --------->MYB52(1) ->DOF2       --------->YAB1   <---------ANAC58 <-----------------------TaNAC69(2)--------->ANAC46   ttgcatctttttccaaacacaatctcacaactagcgttatgtagcatggaagcgtcaaaagacacacgatttcacgcttcaaaagcgcaacggaagcact  17173300                                                                      <---------YAB1                                                         ------>ZmHOX2a(2)                                                        <---------GLK1(1)                                                        --------->GLK1(1)                                                       <---------AGP1 <---------TOE2(3)                                    <---------HSFB2a(2)<---------ARR11(3)                                    --------->HSFB2a(2)--------->ARR11(3)                              --------->ARR11(3)      --------->RVE1(1)                              <---------ARR11(3)   ---------->DOF2  --------->AHL20(2)              <                          ---------->DOF2       ----------->GT1     <---------AHL20(2)         <-----                   --------->At4g35610 <---------GLK1(2)<------ZmHOX2a(2)           ----------->GT1 <                 --------->YAB1  <----------DOF2<---------ANAC46   --------->AHL20(2)        <-------   ctcttccaattttgcaaaatcagaagcgcaaagttctttcagaaactgaagcgtaaagatctcttacaaattaatattgaacaaaaacgaaaattgagga  17173400                                 ------>NtERF2                                 --------->LBD16                                --------->RAP2.6(2)                             --------->ARR14(2)                       <---------ARR14(2)                       --------->ARR14(2)                      <------NtERF2  ----------->GT1   <---------ANAC46                                                         <------- ---------ANAC58    <---------ANAC58                          <----------DOF2          <---------AHL20(2) -ZmHOX2a(1)        <---------ANAC58                        *TSS                       --------->AHL20(1) ---------ANAC58   <---------LBD16     >>>>>>>>>TBF1     ---------->ID1         ----------->GT1<----- --TOE2(3)  --------->TOE2(3)<---------ARR14(2)  <---------GLK1(2) <----------DOF2     --------->AHL20(2)   gggcttgaaaataacttcaatggcggattcagagccgcgaagaagaagatagaatttttgtcttcttttctttatgtgaaaactgaaaataaaatactat  17173500                                                                  --------->AHL20(2)                                                                  <---------AHL20(2)                                                                  --------->AHL20(1)                                           --------->HSFB2a(2)   --------->AHL20(2)              <---                                           <---------HSFB2a(2)   <---------AHL20(2)              ----                                      <----------DOF2   <------------CBF                        <----                                ---------->DOF2       <---------AHL20(2)                  -----------  <----------DOF2   --------->YAB1   <---------DAG2   --------->AHL20(2)           ----------->GT1  x --YAB1    ------------>CBF  --------->AHL20(2)   <---------AHL20(2)         <---------HSFB2a(2)----- -------CBF<------NtERF2     <---------AHL20(2)   --------->AHL20(2)         --------->HSFB2a(2)-----   tgggcttatgggcctcaattaagcatgagatttaaaaagccttttctacaaattaaaaaattgctaaattaattgttttttagaaatgaaaaatgtaatt  17173600                                                                                                  ---                                                                                                  <--                                                                                                  <--                              <---------ARR14(2)                                                  ---    --------->LBD16           --------->ARR14(2)                                                  <--   --------->ANAC46           --------->ARR11(3)                                                 <--- ------AHL20(2)               <---------AGP1                                                     <--- ----->AHL20(2)               <---------ARR11(3)                                                <---- -----AHL20(2)               <---------CCA1(2)         --------->AHL20(2)                     <------ >GT1<---------ALFIN1  --------->ATHB12           --------->ANAC58                            <------ xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ZAT6   <---------AHL20(2)             <------------MYB.PH3(2) ---->YAB1        --------->DAG2 <----------DOF2  --------->ANAC58                  <-----------GT1<- ---->AHL20(2)   ---------->DOF2------>ZmHOX2a(2) ----------->GT1                --------->YAB1<-----   aaaatccccaacttattgaaaaagttgatttggatctttaactctcgatgaaacgaaataaatatcaaacttctatttttcaaaaataacaaactttcgt  17173700                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------ ------>MYB52(2)                                                                              <------ ----MYB46(1)                                                                                 <------ ----MYB83                                                                                    <------ -------->GT1                                                                                 <------ -------MYB46(3)             ----------->GT1                                                  ------- ------TOE1(2)           <---------TOE2(3)                                                   -------- ------TOE2(2)          <---------DOF5.7(2)                                                 <-------- -----MYB52(1)        <---------MYB52(1)                                                   ---------- ---ANAC58            --------->DOF5.7(2)        <-------TEIL    --------->ANAC46   <-----------GT1 ---ANAC58      --------->ARR14(2)  --------->AHL20(2)           --------->ANAC58   --------->YAB1 ------GAMYB    <---------ARR14(2)  <---------AHL20(2)           --------->ANAC58--------->YAB1   <-- --GAMYB       <---------GLK1(1)<---------AHL20(2)       --------->At4g35610    <---------YAB1-------   tggttaaataggttaacatatcccgttaacgaagttaattttttgtcaatatacatgttaactgaaaacgacattgttttctataataacaaaatgacgt  17173800     <---------ANAC58     <---------ANAC58    ---------->ID1 -->bZIP60(1) ---ANAC58 ---O2 ---TGA2(1)                                                                        --------->AHL20(2) ---ANAC46                                                                         <---------AHL20(2) ---bZIP60(2)                                                                     <xxxxxxxxxxxxxxxxxx ---bZIP60(1)                                                                    <xxxxxxxxxxxxxxxxxxx ---ANAC58               --------->TOE2(3)                                       <xxxxxxxxxxxxxxxxxxx -->TGA2(1)              --------->TOE1(3)     <---------------AGL15            <xxxxxxxxxxxxxxxxxxxx --->STF1            --------->GLK1(1)    <---------ARR11(3)           ------>ZmHOX2a(1) -TGA2(2)            <---------GLK1(1)    --------->ARR11(3)          --------->TOE2(3)         <xxxx ->TGA1           --------->ANAC58       <---------CCA1(2)         <---------ARR11(3)          <----- --------DOF2     --------->ANAC58   --------->TOE2(3)             --------->ARR11(3)         <------ -->O2  --------->MYB52(1)------>ZmHOX2a(1)    --------------->AGL15 ------>ZmHOX2a(2)     --------->ZAT6   ctttttgtcgtaacggatgaacgaaatccttaaattcaatcttatatctctaaatcgagcaaaatccatgatcctaaattttcatataatttgacactcg  17173900                <----------ID1  <---------AHL20(2)  --------->AHL20(2) xxxxxsmallRNA(le3) xxxxsmallRNA(si3)                             --------->GLK1(1)               ---------->DOF2 xxxsmallRNA(si3)     --------->MYB52(1)       <---------GLK1(1)           <-------GAMYB xxxsmallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->ARR14(2)          <---------MYB46(3)<-------- ----LBD16    <---------ICU4                  <---------ARR14(2)          ----------->GT1<-----------GT1 ---LBD16     --------->YAB1                 <------ZmHOX2a(1)    <-----------GT1       --------->AHL20(2)   ggattttattgaacaattacgacaaaacgatgttgtttattgtgagaggaaatgctatcgttttcaattcacaggtctgttaaaagaaaattaactttgt  17174000  Previous    Next  AGI:  At3g46610.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to hypothetical protein OsJ_034385 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20176.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97464.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO14644.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 17170990    to: 17173460    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version