Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------ANAC58        <---------ANAC58    <---------ANAC58    <---------ANAC58                              --------->ATHB12               ------>MYB83    <-------GAMYB                            <---------At4g35610                 ------>MYB46(1)   <---------MYB46(3)                    <-----------HVH21                     --------->DEAR3(1)   <------MYB83                      <---------ARR14(2)                       <---------At4g35610   <------MYB46(1)                   --------->GLK1(2)                        --------->At4g35610 --------HSFC1(2)                    --------->ARR14(2)                     <-----------GT1 ------->HSFC1(2)                   <---------GLK1(2)                     <-----------HVH21 ->At4g35610         xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            <-----------GT1 --At4g35610 --------->ATHB12  <-------TEIL  --------->At4g35610--------->ARR14(2) --RAV1(2)<----------DOF2     --------->CCA1(2)  --------->ICU4 <---------ARR14(2)    ---------->DOF2   aagcttggttgcctttcattggggactacaagattcaagaatctgtcagccaagattgggacagagtattcactcttgtcacctcccaaaacgctggaaa  17160300                                                                                             <------MYB83                                                                                           <--------P                                                                                          <---------ANAC46                                                                                          <---------ANAC58                                                                                          <-------GAMYB                                                                                          <---------ANAC58                                                                                         <---------MYB46(3)                                                                                         <------MYB46(1)                                                                                         <---------DEAR3(2)                                               --------->ANAC46                          --------->MYB52(2)                                              <-------MYC2                               --------->MYB55(2)                       --------->ARR14(2)     ------->MYC3            --------------------->WRI1                       <---------ARR14(2)     <-------MYC3      --------->ARR14(2)       <------MYB83                       <---------GLK1(2)      ------->MYC2      <---------ARR11(1)      <---------TOE1(2)                   <---------At4g35610       --------->ANAC46   <-----------ARR10       <---------AtMYB61                --------->At4g35610          --------->ANAC58   --------->ARR11(3)      <---------TOE2(2)       --------->HSFC1(1)                    --------->ANAC58   <---------ARR14(2)     <---------MYB52(1)       <---------HSFC1(1)            <---------YAB1            <---------CCA1(2)      <-------GAMYB       --------->HSFB2a(2)         --------->YAB1            --------->YAB1          <---------MYB46(3)       >>>>>>>ZML2 --------->At4g35610--------->YAB1        <---------YAB1           ------>ZmHOX2a(2)       <---------HSFB2a(2)         ----------->GT1      <---------GLK1(2)     <-----------GT1<------MYB46(1)   aacgatgttctagaagattgctgcagaaactcacaaattgtaataacacgcgctgctagattatcatatctacttagtatttactgatcgttggttggaa  17160400                                                             --------->TOE2(3)                                       --------->ATHB12   <----------DOF2        --------->AHL20(2)          <----------DOF2     ------->TEIL        <---------AHL20(2)     <-----------GT1      <---------------AtSPL8 ----------->GT1  <---------ZAT6 --------->ZAT6     --------------->AtSPL8                     ------   tgcaggttaattttttagtagtgatagttttagtaacactttgatttgagttgtaatgtactttcttaacattttcttagataatttgaaggcaatgtat  17160500                                                                          <---------ZAT2                                                                          --------->ZAT2                                  ---------->DOF2                         <---------ZAT14            <----------DOF2 ----------->GT1                               --------->ZAT14          <---------ANAC58  --------->YAB1                                --------->At4g35610     --------->ATHB12--------->GLK1(2)                        --------------->AtSPL3        ---------     --------->ATHB51--------->ARR14(2)                       --------------->AtSPL8      <----------DOF2    <---------AHL20(2) <---------------------WRI1            --------->ZAT18              <----------    <---------YAB1   <---------ARR14(2)  <---------YAB1     --------->ALFIN1     --------->ZAT14 ---- ->TEIL   <---------ANAC58<---------MYB52(1)     ---------->DOF2          <---------At4g35610<-------   gtctatattattgcctttgagagaatccgatagtaacaaagttatgaaatctaaagttcgatgtgcggtacttctctgctcagttctctctgctttaaat  17160600                                                                --------->ANAC55(1)                                                                --------->ANAC58          <---------MYB52(1)                                    --------->ANAC46    --------->YAB1                                              --------->ANAC58 >AHL20(2)--------->ARR14(2)                         ------>ZmHOX2a(1)--------->YAB1 -----AGL15                                       ---------->ID1--------->ANAC55(2) ------->GT1                                  <----------DOF2  <---------LBD16  --------->ICU4 --AHL20(2)  <---------YAB1                ------>NtERF2    --------->CCA1(2) <-----------------AGL1   tgtgaatcatcagttatgcataggctctatctatctatgcttctctgcctttgtcctaaatgatatacggaagcatactgacataatttggaataagttc  17160700                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                               <---------ANAC58                                                               <---------ANAC58                                                             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                             xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                             <-----------GT1                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            <---------WOX13(1)                                                          xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                          --------->ATHB12                                                          <---------ICU4                                                         <---------YAB1                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       <------ZmHOX2a(1)                                                       --------->YAB1                                                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                     xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                    xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                    xxxxxxxxxxxxxxxx>smallRNA(fl3)                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   <---------MYB52(1)                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 <---------MYB46(3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                               xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                           xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       xxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxx>smallRNA(le3)                                       <---------ZAT14----------->GT1                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                       --------->ZAT14xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       xxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxx>smallRNA(s)                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                      xxxxxxxxxxxxxxxx>smallRNA(le3)                                      xxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxxx>smallRNA(si3)                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                      xxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxx>smallRNA(le3)                                     xxxxxxxxxxxxxxx>smallRNA(le3)                              <----                                     xxxxxxxxxxxxxxxx>smallRNA(se3)                            <-----                                     xxxxxxxxxxxxxxxxxx>smallRNA(le3)                         -------                                     xxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ANAC58        -------                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxx                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    <-------                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxx                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxx>smallRNA(s)     --------->ANAC46      xxxxxxxxx                                     xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(s)                                     *TSS xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxxx>smallRNA(i)                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(le3)                                     xxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)------                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxxxxxxxxx                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)  xxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ANAC58     xxxxxxxxxx                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxxxxx                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxx>smallRNA(le3)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ATHB12 xxxxxxxxxxxxx              ----------->GT1       xxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->AtLEC2xxxxxxxxxxxxxxx          --------->ZAT14     ---------->DOF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->LBD16          <---------ZAT14    --------->AtMYB61xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<---------LBD16------    <-----------GT1         --------->MYB46(3)--------->MYB52(1)  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------YAB1          ------->TEILxxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   aagttataacagaacagtgtgaaaatatgaaccaaagcgtctgtagtccaacggttaggataattgccttccaagcaatagacccgggttcgactcccgg  17160800 --------->ANAC58 --------->ANAC58 --NtERF2                                                        <----------DOF2 ------HVH21                                                  --------->ARR11(3) -->ANAC46                                                    --------->AGP1 -->LBD16                                                     <---------ARR11(3) xxxxxxxxxxx>smallRNA(le3)                                    <---------AGP1 --LBD16 --------->AHL20(2)                           <---------AHL20(2) >smallRNA(s)                                      <---------ARR11(3) xxxxxxx>smallRNA(s)                               <---------AHL20(1) --->LBD16<---------AHL20(2)                       --------->AHL20(1) x>smallRNA(si3)                                   --------->ARR11(3) xxxxxx>smallRNA(s)                              --------->ICU4<------ZmHOX2a(2) >smallRNA(se3)                              --------->At5g28300------>ZmHOX2a(2)     <----------DOF2 xxx>smallRNA(s)        <-----------GT1    --------->ZAT6<----------DOF2           <-----------GT1 x>smallRNA(s)   <-----------GT1<---------MYB52(1)<---------AHL20(2)     <---------TOE2(3) >NtERF2 <---------AHL20(2)    <-------GAMYB----------->GT1  <---------CCA1(2) <---------AHL20(2)   cagacgcatttttaaattttgacattttacgctcgttgtttatgaacagtaaatattttctttagatctttgtttaagaattttttttctttctaaaatg  17160900                                                                                                  ---                                                                                               ------                                                                         <----------DOF2--------->MYB52(2)                             <----------DOF2           --------->DAG2    <---------DAG2<---------TOE1(2)                        --------->YAB1                ---------->DOF2  <---------TOE1(2)<---------MYB46(3)                       <---------YAB1          ----------->GT1       <---------ZAT18  <---------MYB52(1)               ---------->DOF2              <---------ANAC46    <---------YAB1    <---------DOF5.7(2)   gctaagaacattgtcgtcaaagactataattcttttctgtcttatgcagtggataaaaaaggggttcttatcgcacttttcagttatcgtttgtttccta  17161000                                                                 <--------HAHB4                                                      <------NtERF2                                                      --------->ALFIN1     ----------->GT1                                                    <---------ANAC58      --------->DAG2                                                    <---------ANAC46     ---------->DOF2     <-------                                                  ------->GAMYB  <---------ICU4             ---------                                          --------->GLK1(1)      --------->YAB1          --------->DEAR3(1)                        <---------ALFIN1<------ZmHOX2a(1)       --------->AHL20(2)      --------->ANAC46                     <-----------GT1 <---------LBD16<---------ANAC58<-----------GT1   <---------ALFIN1                  <---------GLK1(2)  --------->HSFB2a(2)  --------->At4g35610         --------->ANAC46           ----------->GT1           <---------HSFB2a(2)  <---------At4g35610      <---------ARR14(2) ------>YAB1----------->GT1--------->TOE2(3)   --------->MYB52(1)--------->ATHB51  --------->ARR14(2) >ZmHOX2a(1)<----------ID1--------->ANAC46<---------GLK1(1)     --------->ICU4 >>>>>>>>>MYB98--------   tcagaaaacaaaatgggaaaaattctccacctcaaaattcgaggaattctaacggcgtggagatgaataattaccaaaagtaacatatacacccccgtcg  17161100                                                                --------->At5g28300                                                               ----------->GT1                                                               <---------ANAC46                                                          <---------At4g35610                                                          --------->At4g35610                                                        --------->ZAT14                                                        <---------ZAT14                                                   <---------ZAT14                              <---------MYB52(1)   --------->ZAT14                             <-------GAMYB         <---------ZAT18                                  -                     <---------CCA1(1)             --------->ZAT18                        <---------AHL20(2)                     <---------RVE1(1)          xxxxxxxxxxxxxxxx>smallRNA(s)              --------->AHL20(2)  --------->MYB52(1)<---------ARR11(3)          --------->At4g35610                <-----------GT1  -  <-----------GT1   <---------AHL20(1)          ----------->RAV1(2)            <---------AHL20(2)   < ----HVH21          --------->ARR11(3)        --------->YAB1 ------>NtERF2   <---------RVE1(1)     -- >DEAR3(1)          --------->AHL20(1)     --------->YAB1--------->ANAC46   --------->ARR11(3) ------ ->LBD16        ---------->DOF2 --------->ATHB12<---------At4g35610         <---------GLK1(2)  <-----   aaaataacgagttttcaaaaaagatattttcggttgatttgtcgataatcatctgcactacgctgcggtatattttcagatttttttatcgtttaattta  17161200  Previous    Next  AGI:  At3g46580.1    Description:  MBD5 (methyl-CpG-binding domain 5); DNA binding. similar to MBD6 (methyl-CpG-binding domain 6), DNA binding [Arabidopsis thaliana] (TAIR:AT5G59380.1); similar to unknown [Populus trichocarpa] (GB:ABK93437.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Methyl-CpG DNA binding; (InterPro:IPR001739) Range:  from: 17159327    to: 17160574    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g46585.1    Description:  pre-tRNA. tRNA-Gly (anticodon: TCC) Range:  from: 17160737    to: 17160808    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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