Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                      ------>NtERF2                      <---------At4g35610         --------->AtLEC2                          --------->At4g35610                   --------->At4g35610    --------->ANAC46                               <---------At4g35610                   <------NtERF2 ------->ANAC46                    <-------TEIL   <-----------RAV1(1)                   <---------ATERF1(1) -----At5g28300       <-----------RAV1(1)----------->GT1                                --------->RAP2.6(2) ------GT1  ---------->DOF2    <---------YAB1  <---------YAB1        <---------YAB1    <---------RAP2.6(2)   ccctcaacaccatgaaaagactaagtgttgttcatgatacatctggtttattatgctgccttcaatgttttcttattggccatcaaatggccgctccatg  17078300                                                                                               ------                                                                                               <-----          <-----------GT1                                                                     <------          <---------WRKY18(1)       <---------ANAC58                                          -------         --------->WRKY12       <----------DOF2                                               -------         ----------->HVH21    <---------YAB1                     <-----------GT1              <------        <---------WOX13(1) <---------AHL20(2)                   <-----------GT1       --------->AtLEC2      --------->ATHB12   ------->TEIL        <----------DOF2<----------DOF2      --------->ANAC46 --- ------->HVH21      <---------AtLEC2<---------ANAC58   <-----------GT1        <---------ZAT18 -------   tgatagctcgattgacctcttggcatgaatttatctttgctggtttcctttttttttttactctttttatcccatcttagttccctccatggacaagatc  17078400 --->CCA1(2) -ZmHOX2a(2)                                            <---------YAB1 ---ARR14(2)                                            ----------->GT1 -->ARR11(3)                                          --------->YAB1 -->AGP1  <---------ALFIN1                           ----------->TGA1 ---ARR11(3)                                <---------AtLEC2   <----------ID1                  ------ -------->RAV1(1)              <---------YAB1------->TEIL    ---------->DOF2                   ------ -->ARR14(2)      <---------ICU4  ------->TEIL    <---------AHL20(2)                   <---------ATHB12   caacaaatttcaacacctaaaaatgactacaatatgaatatgcaatgcatgtttaatgacgataaaagacaaaatataactaaaatgcaatgaaaccaag  17078500                                                                                                  <--         <---------ARR11(3)                                                                       ---         --------->ARR11(3)                                   <----------DOF2                    <---         --------->GLK1(2)                                   <---------DAG2                      ----  ----------->GT1                                       <---------ANAC58                  ----------- --->ANAC58               ----------->GT1               <---------ANAC58           ------------>CBF --->ANAC58     ----------->GT1                  <-----------GT1  <---------AHL20(2)     <----------ID1   aaaatggtgaaaatctaagagttaaactaggtaaaatacaaacacatcaatttcccatacttgcctttttatttgtaatcaaacaaacaatgcaacaaat  17078600                                                                                    <----------ID1                                                                                  ---------->DOF2                                                                             ========================                                                                             ------>ZmHOX2a(2)                                               <---------ANAC58             <------ZmHOX2a(2)                                              --------->At4g35610           =========================            ----------->GT1                   <---------At4g35610          --------->ARR11(3)           ----------->GT1                   <-----------ARR10             <---------ARR11(3)        ---------->DOF2   <---------ZAT6    <---------CCA1(2)              --------->ARR14(2)    <---------YAB1        ----------->GT1 <---------ANAC58                 --------->AGP1 -------AHL20(2)     --------->ALFIN1     <---------ANAC58                 <---------AGP1 ------>AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   <---------ARR14(2) ------AHL20(2)   --------->DAG2      ---------->DOF2                      <---------ARR14(3) ----->AHL20(2)  ---------->DOF2   --------->TOE2(3)        *TSS           --------->ARR14(3) >RAV1(1) <---------TOE2(3)     <-----------GT1<---------ANAC58        ---------->DOF2   ttttttatgaaaaaggtttaaaagtggagagttataaccaaaatgcgtagcttaccatttctaagctcgagatgaaagatcttggaaagacaaaattttg  17078700                  --------->At4g35610                  ----------->RAV1(2)                                                               <               <---------At4g35610                                                      ---------->DOF2  <------ZmHOX2a(1)                                                         --------->GLK1(2)      xx ========HOX2a_HOX2a              <---------ANAC58      --------->ANAC46   <---------GLK1(2)   <----- ========HOX2a_HOX2a              <---------ANAC58   <-------TEIL          --------->ARR14(2)  ------   tctaggattacagattgagcacctgaagaatggaatccttgtgtatcaaatgacatacacagaaaatgtgcttaagagattctctctagacaaagcacat  17078800              <---------ICU4              -------->ATHB1                       <---------ANAC58              <--------ATHB1                 <-------TEIL <---------HSFB2a(2)              --------->YAB1                <------ZmHOX2a(2)              --------->ATHB12              ===================HOX2a_HOX2a             --------->ICU4                <---------ARR14(2)             <---------YAB1                --------->AGP1 --------->HSFB2a(2)          ------------>ATHB5               --------->ARR14(2) ---------MYB52(1)                         <---------ARR11(3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->ARR11(3) ----ARR14(2)<---------ATHB51          ---------->DOF2  ------>ZmHOX2a(1) --->ARR14(2)<---------ATHB12   <---------ANAC46   <---------ANAC58         --------->GLK1(2)   ccgttgagtagcccaatgattgtaagaacacttgatgtggataaagatccattccgtcctcgagaagaaaatgaagaaattcttggccctgaagtaccat  17078900                              <---------ANAC58                              <---------ANAC58                             <---------STY1(2)                          <---------ANAC58                          <---------ANAC58                        ------->TEIL                    <---------------AtSPL8                <----------DOF2                                                            <---------ALFIN1            <------ZmHOX2a(1)--------->STY1(2)    <-------TEIL                   <---------At4g35610     <---------ZAT18<---------TOE2(3)         ----------->HVH21             --------->ARR11(3)     --------->ZAT18--------------->AtSPL8 <---------ARR11(3)               <---------ARR11(3)   acttaagtgcaataggagcattaatgtaccttgctagtcatacaagacctgatacattttcggtgaatttgttagcaagatttagctcatgcccaactcg  17079000                                                                   --------->HSFB2a(2)                                                           --------->KAN4(1)                                                           <----------TaMYB80                                     <---------AtLEC2      <---------KAN4(1)                                     <---------ANAC58     <---------ARR14(2)                                     <---------ANAC58     --------->ARR14(2)                                 <---------ANAC58         ---------->TaMYB80                              <---------GLK1(2)    --------->CCA1(2)                            ----------->ARR10     --------->ARR11(1)                          ------>ZmHOX2a(1)       <---------ARR11(3)                         --------->TOE2(3)        --------->ARR11(3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->KAN4(2)                 <------MYB83              ===================HOX2a_HOX2a      --------->ARR14(2)                          <------MYB46(1)              <------ZmHOX2a(2)  <---------ANAC58 <---------ARR14(2)                        <--------   --------->ANAC58 <---------ARR11(3)        ---------->DOF2      <---------HSFB2a(2)    --------->ATHB12   --------->ANAC58 --------->ARR11(3)  ----------->GT1   <---------KAN4(2)             xxxxxxxxxxxxx   aaggcacgagaatgggatcaaacatctccttagatacttgcatggtacaaaagatatgggtatattcttctgtaactcgtccaaagaagacttgattggt  17079100                          ------>ZmHOX2a(1)                          ====================HOX2a_HOX2a                          <---------------AGL15                        ================================HOX2a_HOX2a                        xxxxxxxxxxxxxxxx>smallRNA(i)             <---------ARR11(3)             --------->ARR11(3)                    --------->CCA1(2)            --------->GLK1(1)                      <---------GLK1(1)            <---------GLK1(1)                      --------->GLK1(1)           <---------ARR11(3)          <------ZmHOX2a(2)        ------>MYB46(1)          ====================================HOX2a_HOX2a       ------>MYB83     --------->ATHB12          =====================HOX2a_HOX2a        <---------ARR11(3)             <---------AHL20(2)      <-------TEIL      ------>ZmHOX2a(2)         --------->ARR14(2)         ------>ZmHOX2a(1)   --------->At4g35610--------->ARR14(2)          <---------ARR14(2)  <---------SPL7   <---------ANAC46   <---------At4g35610<---------ARR14(2)         <------ZmHOX2a(1)   <---------MYB46(3)<---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->YAB1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -WOX13(1)<------ZmHOX2a(1)            =================HOX2a_HOX2a --------->ALFIN1   <---------ANAC58 xxxxxxxxxx>smallRNA(le3)--------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->AHL20(2)   tttgcagatgcaggatatctatctgatcctcaaaatggtcgatcacaaacaggatatgtgttcacctacggtggtactcctatttattggcgttctatga  17079200  Previous    Next  AGI:  At3g46387.1    Description:  transposable element gene. copia-like retrotransposon family, has a 4.6e-41 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element) Range:  from: 17078660    to: 17079589    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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