Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      --------->AHL20(2)                                                   --------->YAB1                                                  --------->AHL20(2)           <----------DOF2                                          ----------->GT1                <---------ANAC46                                       <---------AHL20(2)                <---------ANAC58                           --------->AtMYB61    --------->YAB1           <---------ANAC58                    <----------DOF2 <---------AHL20(1)             <---------AHL20(2)        --------------->AGL15       --------->AHL20(1)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) ---->GT1   ---------->DOF2<---------ICU4 <---------ANAC55(2)     <---------YAB1 -ZAT2  <---------------AGL15       --------->AHL20(2)         <---------AHL20(1) >ZAT2 <-----------------AGL3       <---------AHL20(2)         --------->AHL20(1)              ------ >ZAT14----------------->AGL3       --------->ARR11(3)         <---------AHL20(2)<---------AHL20(2) -ZAT14<-----------------AGL2       <---------ARR11(3)         --------->AHL20(2)--------->AHL20(2)   gaaactcttgctaataaagggtctttccaccattacaatatattatgtaaaaataaaaatagtattttattatttgtgtgtctttaaatttgagacacaa  16973800                                              <---------AHL20(2)              ----------->GT1                                             --------->AHL20(2)          <---------CCA1(1)                                             <---------AHL20(2)          <---------RVE1(1)                                         --------->AHL20(2)             <---------ARR11(3)                                         <---------AHL20(2)             --------->ARR11(3)     ------                                       <----------DOF2               <---------TOE1(3)        -------                                 --------->YAB1                      <---------TOE2(3)        <------                                 <---------ICU4   --------->YAB1    <-----------GT1 --------->TOE2(3)       <---------ARR11(3)     --------->YAB1 <---------AHL20(1)--------->AHL20(2)   <----------DOF2 ---->DOF2                  <---------TOE2(3)--------->AHL20(1)<---------AHL20(2)<-----------GT1   agtcttcaatgtcttagtaaaaacatttttaagaataatgtctttaatttaatgagcatttacatttatttaacgatattttgtaactttagttatttaa  16973900                                                                                            <--------                                                             --------->YAB1                 <--------                        <---------At4g35610       --------->TOE1(3)                    --------->ANAC58                        <---------GLK1(1)         ------->GAMYB                 <---------REM1(1)               --------->ANAC58                <---------ARR14(2) <---------ARR11(3)   --------->ANAC58 ---->DOF2     --------->AtLEC2                --------->ARR14(2) <---------GLK1(2)  <---------ANAC58 -->AHL20(2)   --------->ANAC58                --------->MYB52(1) --------->ARR11(3) <---------ANAC58 ---AHL20(2)   --------->ANAC46     --------->ARR11(3)--------->At4g35610      --------->MYB59   agacactctccaaaaacatgcaatggagatgctctaactatcttggccataaccgtagctaaatcatagatttttgtaagttatgtagcatgctatggtt  16974000                                                                                  --------->MYB52(1)                  <----------DOF2                                               <---------MYB111(1)          <---------YAB1                                                     ------->GAMYB       <---------AHL20(2)                                                   <---------MYB111(1)     <---------AHL20(2)                                    <---------At4g35610  <---------MYB46(2)    --------->ARR11(3)                                --------->ANAC58      <---------MYB52(2)    <---------ARR11(3)                                --------->ANAC58      <------------MYB.PH3(2)    --------->AHL20(2)                       <<<<<<<<<<WRKY38               <---------MYB46(2)    <---------AHL20(2)                       <<<<<<<<<<WRKY26               <---------MYB111(2)    --------->AHL20(1)                       <<<<<<<<<<WRKY43  ---------->DOF2  <---------MYB52(2)    <---------AHL20(1)                       --------->WRKY18(1)       --------->ANAC58   --------->AHL20(2)--------->YAB1        <------MYB83 ---------->DOF2--------->ANAC46 -TOE2(3)<---------AHL20(2)                <------MYB46(1) --------->At4g35610--------->MYB52(1) -TOE1(3)--------->AHL20(2)       <----------DOF2     --------->ANAC46 --------->ANAC58   tgcaaatatatttttataagctttcatagaattagactttacatttggtcaagtacaagaaagctgaaagcctacgcaactaactaacaaaataagacca  16974100            <---------TOE2(3)                                                                   -----      <---------AHL20(2)                                                                     <-------    <---------AHL20(2)                               --------->AHL20(2)            --------->CCA1(2)   --------->AHL20(1)                                <---------AHL20(2)           --------->ARR11(3)   <---------AHL20(1)                   <-----------RAV1(1)                       <---------ARR11(3)  <---------CCA1(2)                   <------------CBF <---------YAB1 <----------DOF2 <-------TEIL   gcttatatatttttaagttaaattttggattcaaattcgatattgttgcaagaatttatatttgttcagcctcttttgtgtctagatatacatattttaa  16974200                                                                                       --------->ATHB12                                                                                       --------->ATHB51                                                                                <-------PIF5                                                                                ------->MYC3                                                                                ------->PIF5                                                                                <-------MYC3                                                        --------->ANAC58        ------->MYC2                                                 <---------MYB52(1)             <-------MYC2                                                <------NtERF2                  --------->O2                                               --------->ANAC58                --------->TGA1a                                               --------->ANAC46                <---------TGA1a                                               --------->ANAC58                ======================                                              --------->ZAT18                  <---------O2                                             --------->ATERF1(1)            <-------TEIL                                             <-----------------AGL1      <------MYB83  -------->ATHB1                                             ----------------->AGL1------>ZmHOX2a(2)  <---------ATHB51                        <---------AHL20(2)  ------>NtERF2        <---------AGP1<---------ANAC46 -----                       --------->AHL20(2)   <---------ZAT18      --------->ARR11(3)   <---------YAB1                    <-----------TBP *TSS<-----------RAV1(1)      --------->ARR14(2)   --------->ICU4- ----->DOF2    ----------->GT1     <---------ARR11(3)   --------->ANAC58 <------MYB46(1)     -------- --AHL20(2)  <------ZmHOX2a(1)<-------TEIL  --------->PCF2       <---------ARR14(2)------------>ATHB5   aagacacttcaaataggatgttatatataatatacatgatatatggtgcccgctagggaagctagtggatctagtgggttcacgtggaattattgatatg  16974300                                                                           --------------->AGL15                     --------->At4g35610                                   <---------------AGL15                     <---------At4g35610                                  ----------------->AGL2          <-------MYC3                                                    ----------------->AG          <-------MYC2                                                    ----------------->AGL3          ------->MYC3                                                   ----------------->AG       <---------ALFIN1                                                  ----------------->AGL1   --- =========================MYC_MYB            <----------ID1     <---------ARR14(2)       --------->ZAT2 ------>GT1      <-----------RAV1(1)   <---------AtLEC2         --------->ARR14(2)       --------->At4g35610 --------->TaMYB80<-------GAMYB--------->WRKY12               ----------->ARR10      --------->GLK1(2) ->CCA1(2)------->MYC2         --------->WRKY38(1)  <---------ARR11(3)   <-----------------AGL1   ---   ggaatatcaacacatgcttctgttgctgaagcgttggccttgcattgaagacaaaatcatcgagtcgatactcttacccaaatagagaatcagcttgagt  16974400                                                  <------ZmHOX2a(1)                              <---                                                <---------TOE1(3)                                ----                               <---------MYB52(1) --------->YAB1                                 ----                              <---------SPL7<---------At4g35610                    <---------MYB52(2)     <---------TOE1(2)       <---------HSFB2a(1)<---------TOE2(3)     <---------GLK1(2)<---------ICU4 ------>MYB59          <------ZmHOX2a(1)    --------->At4g35610       <---------ARR14(2)      <------ ------>MYB52(2) <---------LBD16    <----------DOF2 <---------YAB1    --------->ARR14(2)    <--------   tagttcgaaggaatcaaattggggaggaagaccgttcgctttggagagctaaggatgatagcttcaagagcaaattctcttcgaaacaaacatggcatca  16974500                   <---------------------WRI1                --------->ZAT2         <---------ALFIN1                                                                        ----         --------->AtMYB61                                                                  <-------- ------At4g35610<---------ZAT2                                                       <---------------AGL15 ----->ZAT2------>MYB83       ---------->DOF2                           =============================MADS_MADS ----->At4g35610<---------At4g35610                       <---------ALFIN1           --------------->AGL15 ---At4g35610   --------->At4g35610                    --------->ANAC46 <---------------AGL15 ------- -bZIP60(1)------>MYB46(1)<----------ID1     <----------DOF2   <---------ICU4       <---------YAB1   gctaagagagaccacccgagctgcgaatggaacaaaggagtttagttctttctctcaactccacattatttcttcttaacttggttacgatattaagaat  16974600                                  <---------MYB46(3)                              --------->ATHB12                              -------->ATHB1                              <---------ICU4                              --------->ATHB51                             <---------AHL20(2)                             <---------ATHB51       --------->ICU4        --------->ICU4             --------->ANAC58  --------->ANAC58           --------->AHL20(2)         --------->ANAC58  --------->ANAC58        <---------AHL20(2)         <---------ARR14(2) ----->YAB1               --------->AHL20(2)         --------->ARR14(2)                    --------->ARR14(2) -TOE2(3)                --------->AHL20(2)         <------ZmHOX2a(1)       --------->MYB52(1)<------ -->YAB1                 <---------AHL20(2)       <---------TOE2(3)  --------->ALFIN1      <---------ARR14(2)   aaaaacgaaatgaataggcctacttgattaaattattggttgaaaccaatatgaggataagcaagatggcagtgaggcaaacggagttttgaatatttgc  16974700  Previous    Next  AGI:  At3g46186.1    Description:  pseudogene, hypothetical protein, similar to non-LTR reverse transcriptase, putative Range:  from: 16974236    to: 16974613    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version