Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->ZAT18                                <---------ZAT2                                --------->ZAT2                                <---------At4g35610                                --------->At4g35610                       --------->LBD16                              <---------ZAT18                      ------->TEIL            <---------                             <---------ANAC58                      --------->ARR14(2)    <---------At4g35610                    <---------ANAC58                              <---------GLK1(2)      <------NtERF2                    <---------ANAC58                      --------->At4g35610           ------>NtERF2   <---------MYB46(3)        <---------ANAC58            ------->GAMYB <---------LBD16 <---------DEAR3(1) --->GAMYB          <---------ANAC46     <------ZmHOX2a(1)--------->ZAT14--------->LBD16<---------DEAR3(2) ---->MYB46(3) xxxxxxxxxxxxxxxx>smallRNA(i)           --------->MYB52(1) --------------------->WRI1   agccttggttccttcagaaacagcgtgtttagcgagctcaccaggaagaacgagtctaacagcagtctgaatctcccgagaagtaatcgtcggcttcttg  16908600                   --------->ARR14(2)                   <---------GLK1(2)<---------HSFB2a(2)            <----------DOF2         --------->HSFB2a(2)          <---------ZAT2            --------->HSFC1(1)                                         ------        <---------ZAT18             <---------HSFC1(1)                                         <-----       <---------ANAC58    ------>NtERF2               ------->TEIL                            <-----       <---------ANAC58 <---------At4g35610    <-------GAMYB                                   ------     ------>MYB83  <---------ARR14(2)     <---------ARR11(3)                     <---------ANAC58     ------>MYB46(1)--------->GLK1(2)     --------->ARR11(3)                     <---------ANAC46 -DOF2--------->STY1(2) --------->At4g35610   <---------ANAC46--------->YAB1     <---------ANAC58<---   ttatacctagcgagctttgaagattccgatgccaatttctcgaagatgtcgttgatgaaactgttcataatacccatagccttgcttgaaataccaatat  16908700                                                                                            ---------                                                                                           ------>NtERF2                                                                                           --------->LBD16                                                                                         <------NtERF2                                                                                         <---------LBD16                                                                                         --------->ATERF1(1)                                                                                        <---------ATERF1(1)                                                                                        ------>NtERF2                                                                                       --------->PCF5                                                                                       --------->DEAR3(1)                                                                                      --------->ATERF1(1)                                                                                      <------NtERF2                                                                                     <---------SPL7                                                                                     --------->ABI4(1)                                                                                     ------>NtERF2                                                                                     <---------DEAR3(2)                                                                                     <---------ATERF1(1)                                                                                    --------->RAP2.6(2)                                                                                    --------->ATERF1(2)                                                                                    <---------ATERF1(2)                                                                                    <---------DEAR3(1)                                                                                    --------->DEAR3(1)                                                                                   --------->ATERF1(1)                                                                                   <------NtERF2                                                                                   --------->DEAR4(2)                                                                                   --------->RAP2.3(1)                                                                                   --------->ORA47(2)                                                                                  <---------ATERF1(1)                                                                                  <---------RAP2.3(1)                                  ------>ZmHOX2a(2)                               --------->ABI4(1)                                --------->ARR14(2)                               --------->RAP2.3(3)                                --------->ARR11(3)                               --------->RAP2.3(2)                                <---------ARR11(3)                               <---------ATERF1(2)                                <---------AGP1                                   --------->ATERF1(2)                                <---------ARR14(2)                               <---------DEAR3(1)                               <---------CCA1(2)                                 --------->DEAR3(1)                              ----------->ARR10                                 --------->RAP2.3(1)                           <---------REM1(1)                                    --------->DEAR4(2)     ------->TEIL         --------->ARR11(3)                                    --------->ERF1 --->ARR11(3)      --------->TOE2(3)            <---------ALFIN1                --------->ORA47(2) ----ARR14(2)      --------->TOE1(3)       <-----------GT1                      --------->ATERF1(1) ----ARR11(3)   <---------GLK1(2)<------ZmHOX2a(2)                   <<<<<<<<<TBF1------>NtERF2 --->ARR14(2)<---------HSFB2a(2)<---------ARR14(3)                 --------------------->WRI1       < ------LBD16 --------->HSFB2a(2)--------->ARR14(3)       <<<<<<<<<TBF1         <---------RAP2.3(1) <-   ctggatgaacttgtttcagaaccttgaagatgtagatcttgtaagtttccacactcttcttcttcatcttcttcttcttatcgccgccggccccggcttc  16908800                                                                                     <------MYB46(1)                                                                                     <------MYB83                                                                                   <---------ANAC46                                                                                  <------NtERF2                                                                                  --------->ATERF1(1)                                                                                  <---------ZAT2                                                                                  <-------GAMYB  ----                <------NtERF2                                                     <---------At4g35610               --------->LBD16                                                    --------->At4g35610               ------>NtERF2                                                     <---------ERF1  <---              <---------ATERF1(2)                                                <---------ATERF1(1)              <---------RAP2.6(2)                                                <---------MYB46(3)             --------->RAP2.6(3)                                                 <---------RAP2.3(1)             <---------LBD16                                                     ------>NtERF2   ----         <---------ANAC58                                                        --------->MYB55(2)         <---------ANAC58                     <---------LBD16                   <---------DEAR3(1)     --------->HSFB2a(1)                  <----------DOF2                       <---------RAP2.3(3)     <---------HSFB2a(1)              <------NtERF2                             <---------ATERF1(2)     --------->HSFC1(2)              --------->LBD16                            <---------RAP2.6(2)     <---------HSFC1(2)             --------->DEAR3(1)                          --------->ATERF1(2)  --------->LBD16 <----------DOF2  <---------LBD16                              <---------RAP2.3(2) --------->HSFB2a(2)              ------>NtERF2                                --------->ATERF1(1)  - <---------HSFB2a(2)             --------->ANAC46               ------>ZmHOX2a(1)<---------DEAR3(2)-- >ZAT2 --------->GLK1(2)        <---------LBD16          <---------GLK1(1)     <------NtERF2     ---- ---------LBD16<---------RAP2.6(3)--------->LBD16     <---------YAB1         <---------DEAR3(1)  <--- --------LBD16--------->ATERF1(2)--------->DEAR3(1)<----------DOF2          <---------LBD16    <-----   cttcgggagtttcttgccggcttttggtttcttctccgccggagctttctcggcttttgatttctcctctactggtttctcggcggctggtttcttctcc  16908900                                                                                       <---------YAB1                                                                                <---------WOX13(1)                                                                           <------ZmHOX2a(2)                      <------NtERF2                                        --------->CCA1(2)                     ------>NtERF2                                        <---------AGP1                    --------->ANAC46                                      --------->AGP1 ----->LBD16        --------->DEAR3(1)                                    <-----------ARR10 ------At4g35610   <------NtERF2                                          <---------ARR11(3) -->NtERF2  --------->ZAT14                        <---------HSFB2a(2)    --------->ARR14(2) ----->NtERF2      --------->RAP2.3(1)        <----------DOF2             <---------ARR14(2) ------->LBD16    <---------ATERF1(1)         <---------DAG2   >>>>>>>>>TBF1------>ZmHOX2a(2) ----->At4g35610 <---------DEAR3(1)           <---------------AGL15       --------->ARR11(3)      *TSS ------LBD16--------->At4g35610            <-----------GT1  >>>>>>>>>TBF1<---------CCA1(2) --------->ARR11(3) ----LBD16  <---------At4g35610    <----------DOF2<---------LBD16       ----------->ARR10  <---------ARR11(3)   gcgggcttcttctctgctctcggcgccattgttttgacttttgttttacttttctgggtgaagaagaagaagcacagatctgagtgattttgatatctaa  16909000                                                 <---------MYB46(3)                                                 <------MYB46(1)                                             --------->ATHB12                                            <---------YAB1                                    <--------ATHB1                                    <---------ICU4                                      --------->ANAC58                                    --------->ATHB51                                 --------->GLK1(1)                                    --------->ATHB12                    ------>ZmHOX2a(2)    --------                                   <---------YAB1----------->GT1      <---------ARR14(2)------>ZmHOX2a(2)                           --------->MYB111(1)<------------CBF        --------->ARR14(2)--------->ANAC58                    <---------AHL20(2)<---------WOX13(1)             =========================HOX2a_HOX2a                   <-----------TBP --------->ICU4<------MYB83        ==========================HOX2a_HOX2a                   --------->AHL20(2)<------------CBF     --------->ARR11(3)         <---------GLK1(1)               <---------YAB1    --------->YAB1<---------WOX13(1)    <------ZmHOX2a(1) <------ZmHOX2a(2)   tttgatgaagacgagttttgattttatagtagttagaataattgatatgattggttattagatgttgacgaggatcgatgagatgggagatcgcaaccgt  16909100                                                       <---------YAB1                                                       --------->ICU4                                                <---------ANAC55(1)                                                --------->ANAC55(2)                                                <---------ANAC46                                                <---------ANAC58                                                <---------ANAC58                                                <---------ANAC55(2)                                                --------->O2                                                <---------O2                                                <---------TGA1a                                                --------->TGA1a                                                <---------bZIP60(2)                   <---------ARR11(3)                                               ----------->STF1                       <-----------ARR10                                               ----------->bZIP910(1)                 --------->ARR11(3)                                              <---------TGA2(2)                ----------->GT1                                             ----------->TGA1                <---------ANAC46      --         <---------AHL20(2)                  ----------->HVH21              <---------DEAR3(1)   ---- ->MYB46(3)      ----------->GT1          ------>ZmHOX2a(2)                --------->ZAT18   <-------   tgaaattgtttttaatcgacggtttataaacttatgaagcgggatcgatgacgtgtcaatattggtttatgttttagcgcggtgttaaaatctccgttcc  16909200                                                                       <---------WOX13(1)                                                                    <---------YAB1                                                                   ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                  --------->CCA1(2)                                                                 --------->ARR11(3)                                                                 <---------AGP1                                                                 --------->AGP1          ----------->GT1                                        <---------ARR11(3)      --------->ZAT14                                            <-----------ARR10      <---------ZAT14                                            --------->ARR14(2)  <---------ALFIN1                                               <---------ARR14(2)       <---------ICU4 <---------ZAT14                                                <---------CCA1(2)         --------->YAB1 --------->ZAT14                                        ------>ZmHOX2a(2)  <-----------RAV1(1)      < ------->ANAC46         --------->ATHB12          ----------->RAV1(2)  <---------YAB1    <---------ATHB51 ----->ANAC46          <---------YAB1   --------->AHL20(2)     ----------->ARR10         --------->ICU4 --MYB52(1)          <----------DOF2    <---------AHL20(2)---------->DOF2 <---------TOE2(3) <--------   cgctccactgtattgtaaatgggcttttattgggcttaaaattttaatatcagcctgatccaaagcagatctgattaatgtggtctatacaattatgaaa  16909300                                                                              <---------AHL20(2)                                                                             <---------ARR11(3)                                                                             --------->AHL20(1)                                                                             <---------AHL20(1)                                                     <---------ANAC58        <---------AHL20(2)            --------->ARR14(2)         --------->AHL20(2)                    --------->ARR11(3)            <---------ARR14(2)        <---------ARR11(3)                     --------->AHL20(2)  --------->MYB52(1)                  --------->ARR11(3)     --------->MYB52(1)                  ---- ---------MYB52(2)--------->REM1(2)   <---------AHL20(1)--------->ZAT18--------->ZAT6  --------->At5g28300 -YAB1     <---------CCA1(2)   <---------ZAT14       <---------ANAC58<-----------GT1  ----------->GT1   aaactaactaaacatatctgtgaagaaacagagtatagaatatatatactagtaggcttgcactaacagtttaacacaatatattttgctgtaaaactga  16909400                                                        <---------At4g35610                                             --------->AHL20(2)                                             <---------AHL20(2)                                     --------->WRKY38(1)----------->GT1--------->GLK1(2)                               ------->TEIL  --------->YAB1       ---------->DOF2    <---------AtLEC2 --->TEIL              <---------AHL20(2) --------->YAB1--------->At4g35610 ---------->ID1      -----   acctgattacaacttacaagctgatttaaaatgaatttgttgactaataatatgagacagctaaaatataaagaatttgttgtatttgcataaacaagaa  16909500  Previous    Next  AGI:  At3g45980.1    Description:  HTB9; DNA binding. Identical to Histone H2B.6 (H2B) [Arabidopsis Thaliana] (GB:O23629); similar to HTB11, DNA binding [Arabidopsis thaliana] (TAIR:AT3G46030.1); similar to unknown [Populus trichocarpa] (GB:ABK93993.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96597.1); similar to unknown [Picea sitchensis] (GB:ABK25288.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2B; (InterPro:IPR000558) Range:  from: 16908272    to: 16908998    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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