Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                 ====                                                                                                 ----                                                                                                 ====                                                                                                 ----                                                                                                 <---                                                                                             <-------                                                                                       ------>ZmHOX2a(2)                                                                                      <------ZmHOX2a(2)                                                                                     <---------AGP1                                                                                     <---------ARR14(3)                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(3)                                                                                     --------->ARR11(3)                                                                                     --------->ARR14(2)                                                                                     <---------ARR11(3)                                                                                 ---------->DOF2 ----             <<<<<<<<<TBF1             --------->MYB46(3)                        ==================== ---------ARR11(3)          <---------ARR14(2)                                --------->ANAC58   ---- -------->ARR11(3)          ------->TEIL                                      --------->ANAC58 <----- -->YAB1<----------DOF2     --------->ARR14(2)                         --------------->AGL15 --------   gaaatcttctctttcttcttcaatttcatgaatccgattcaacaatcgtttctcttcttcttgccaagcgtttctatgactagcaaagatctcgaccaca  16886700                            ------>NtERF2                        --------->ANAC46                       ------->MYC2                       <-------MYC2                       ------->PIF5        <----------DOF2<-------PIF5                                  <---------DEAR3(1)      --------->At4g35610  --------->DEAR3(1)                       --------->ATERF1(1)      <---------At4g35610------>NtERF2                          <---------ANAC58   <---------MYB52(1)  ------->MYC3                             <---------ANAC58  <----------DOF2      <-------MYC3                          <------NtERF2 ---->MYC3            --------->ANAC58                      <---------ATERF1(1) ---->MYC2          <---------ALFIN1                        <-----------HVH21 -----MYC3     --------->HSFC1(2)                           ------>NtERF2 -----MYC2     <---------HSFB2a(1)                         --------->DEAR3(1) ============bZIP_DOF --------->ANAC46                     --------->RAP2.3(2) ----->ANAC58  <---------HSFC1(2)                          --------->O2 ============bZIP_DOF --------->ANAC58                     <---------O2                        ------ ----->TGA1a  <-----------ARR10                           --------->RAP2.3(1)           <---------ANAC58 ------TGA1a  ------->TEIL<------NtERF2 --------->MYB52(1)--------->ATERF1(1)           <---------TGA1a --ALFIN1     <---------ARR14(2)       ----------->HVH21 <---------ATERF1(1)            <---------ANAC46 ----->ANAC58 <---------ARR11(1)     <---------At4g35610 --------->LBD16                <---------ANAC58 ======bZIP_DOF--------->HSFB2a(1)   --------->At4g35610 ------>NtERF2               ----------->HVH21 ----->ANAC46 --------->ARR14(2)     ----------->RAV1(2)--------->ANAC46            --------->At5g28300 ----ALFIN1  <---------CCA1(2)  --------->GLK1(1)       --------->DEAR3(1)        <---------DEAR3(1) ->AtMYB61   <---------ARR14(1)<---------ARR11(3)     ------>ZmHOX2a(1)<------NtERF2<-----------HVH21   cgcgcgttagctttcgaatcttccacgcgccgagatttcatctgacggacttgttcctccgccgtcgcgagtcgccgttttagctcggtgacttgagatg  16886800                                 --------->At4g35610                                 <---------At4g35610    --------->TOE1(3)                          <---------MYB52(1)           ----------->GT1                        <---------ANAC46              --------->GLK1(2)    <---------LBD16  <---------ANAC46      --------->ZAT6               --------->ARR11(3)   <---------LBD16   <---------ANAC58 <---------At4g35610             --------->ICU4            <---- ----->GT1           <---------ANAC58 --------->At4g35610    --------->ZAT6                  --------   ttaatctcgggacaagagagattgcgtcgtttgggagatgagctaacattactgagaagcttaaaactagaaatgattttgctagtttcttcaattcatc  16886900                          <---------YAB1                     --------->HSFB2a(1)                              <---------ANAC58                     <---------HSFC1(2)                               <---------ANAC58                     --------->HSFC1(2)                  --------->ARR14(2)                     <---------HSFB2a(1)                 <---------ARR14(2)  --------->LBD16                    ------->TEIL                      <---------TOE1(3)      <---------At4g35610                 --------->ANAC46             <<<<<<<<<TBF1           --------->ANAC55(2)--------->ARR11(3)   <----------DOF2<XXXXXXXXXXXXXXXXXXXXXMIR447A/B    <-----------RAV1(2)     --------->At4g35610  --- -----ICU4   ------>ZmHOX2a(1)           <------------------------ANAC81----------->HVH21<---------ARR11(3) ->YAB1     --------->TOE2(3)  --------->TOE2(3) <<<<<<<<<TBF1      <-----------GT1  ---------->DOF2<   atgctctttttcttcctcaacgaagcttctcattctcaatctctcttcttcttcttcaggtttcgccatttttcgtgaccgcagaaaaaaagatactaag  16887000                                                                                                   <-                                                                                                   --          --------->AHL20(1)                                          <---------ANAC58             --          --------->AHL20(2)                          <------MYB46(1) <---------ANAC58             <-          <---------AHL20(2)                   --------->MYB52(1)     <---------ANAC46        -------          <---------AHL20(1)              --------->At4g35610<---------AHL20(2)               <------         --------->AHL20(2)             --------->YAB1<------MYB83   ---------->ID1         --------- ------->DOF2                    --------->WOX13(1) <--------P      *TSS                  <---------AHL20(2) ----------ID1      ---------->ID1   --------->WOX13(1)<------ZmHOX2a(1)                --------->CCA1(2)   aaaagacaaaattttattttttgttctcttgttttcaatctatcagcaaaaacggtaggacatttttttttggcgtattagcgaagttggatataaatca  16887100      <------------CBF --------ARR11(3) ------->ARR11(3) ------->ARR14(2)       --------->ARR11(3)                                          <---------AHL20(2) --------ARR14(2)-------->HAHB4                                                     --------->AHL20(2) ----->CBF       --------->ATHB12               ---------->DOF2            <---------At4g35610      - ---ATHB12      --------->ICU4  <---------At4g35610                       ------->TEIL          <---- >WOX13(1)      <---------YAB1  --------->At4g35610       --------->ARR11(3)      <----------DOF2  <-   atatctgatattgacaaaatgattaagaactagcagttgacaaaaaaaaaaaaagattaagaactagtagcatatgaagctactctttaattgtctgact  16887200            <------ZmHOX2a(2)            --------->CCA1(2)           --------->AGP1           <---------AGP1           <-----------ARR10           --------->ARR11(3)          --------->RVE1(1)       ---------->DOF2      --------->AHL20(2)                   <---------AHL20(2)                                    ----      <---------AHL20(2)                   --------->AHL20(2)                                    ----   --------->YAB1                        <----------DOF2        <---------TOE2(3)        --------->WOX13(1)  <---------YAB1                         --------->TOE2(3)     --------->YAB1        --------->AHL20(2) -------->YAB1    <-----------GT1  --------->AHL20(2)       --------->YAB1           --------->YAB1 ------DOF2<---------ARR11(3)      <---------AHL20(2)      <---------YAB1         --------->YAB1----- --------YAB1------>ZmHOX2a(2) --------->ICU4    --------->TOE2(3)       --------->YAB1<---------YAB1   tttgataataaaagatctaattactaacttggaatatttatttctttaatttcttaatattcttataatgttttatcaaaacaaaaattataaatcaaac  16887300                        --------->GLK1(2)                       --------->ARR14(2)                       <---------GLK1(2)                                   ---------->ID1                       <---------ARR14(2)                                <-----------RAV1(1)                      <---------At4g35610                            <-------MYC3              xxxxxx         --------->ANAC58                                  --------->TOE2(3)                  <------         --------->ANAC58      --------->TOE2(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   ------>ZmHOX2a(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ANAC58     ------->MYC3           <------ZmHOX2a(2) ----->TOE2(2)   --------->ANAC46               --------->ANAC58 <---------ZAT14           <---------ARR11(3) ----->TOE1(2)   --------->ANAC58               --------->ANAC46 <---------ZAT18           --------->ARR11(3) ---->YAB1       --------->ANAC58   <---------MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->AGP1   atatgaacaataagcaaacaagtcagattcttacctcagtcagttttgacacaccatcaaaccatagtacacgttttgttgctaaatccttgagatcttt  16887400                                                                           <---------ARR14(2)                                                                 --------->REM1(2)        <------ZmHOX2a(1)                                                            <---------DEAR3(2)        --------->ICU4                                                        --------->TGA1a    --------->ARR14(2)                                                        <---------TGA1a    --------->GLK1(2)                            xxxxxxxxxxxxxxxx>smallRNA(i)<---------O2       <-----------ARR10                      <---------GLK1(2)                 --------->O2      <xxxxxxxxxxxxxxxxsmallRNA(i)    <----------DOF2   <---------ARR11(3)  ----------->GT1  <---------DEAR3(1)     <------ZmHOX2a(1) xxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------GLK1(2)         < ----DOF2  <---------ANAC46--------->TOE2(3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------TOE2(3)   <   gggagcctttttggtgtgaaacaagattatctcaaatgcgagactcgtgatatgtgagacgtcggtgtgaagacgagaatctgaggaaattaggagcatt  16887500                                                                  <---------RAP2.6(2)                                                     --------->HSFB2a(2)                                                     <---------HSFB2a(2)                                                    <---------LBD16                                                  --------->ARR14(2)                                                  <---------ARR14(2)                                              ----------------->AGL1             ------>ZmHOX2a(2)                         xxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <----------DOF2   <---------GLK1(1)                     --------------------->WRI1<---------------AGL15           <---------ARR11(3)      xxxxxxxxxxxxxxxx>smallRNA(i)      --------->LBD16      --------->TOE2(3) --------->ARR11(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->AHL20(2)  <---------LBD16--------->GLK1(1) ---------ANAC58  <---------ZAT18   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------AGP1 ---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->LBD16         <---------CCA1(2)   <--   gggcttggattacgctccaatgcccttgaatgcatagccttccccaattcaatatcgggaaaacctttgcggtttgcattggatctcttcttggtcttcg  16887600  Previous    Next  AGI:  At3g45900.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66703.1); contains domain PTHR21596:SF1 (PTHR21596:SF1); contains domain PTHR21596 (PTHR21596) Range:  from: 16885387    to: 16887068    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g45910.1    Description:  unknown protein Range:  from: 16887323    to: 16888060    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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