Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            <---------AHL20(1)                                          --------->AHL20(1)                                          <---------AHL20(2)                                          --------->AHL20(2)                                         <---------AHL20(2)                                         --------->AHL20(2)                                     <---------AHL20(2)                  ----------->GT1    <---------YAB1      <---------TOE1(3)           <---------AHL20(2)                                                -      <---------TOE2(3)       <------ZmHOX2a(1)                                                     < ->TEIL      --------->YAB1 <---------TOE1(3)                          --------->AHL20(1)        <--- -ATHB12    <---------YAB1  <---------TOE2(3)  <---------AHL20(2)      <---------AHL20(1)     <------   atcaatttgaggtttttataatgtaaaattaaggattttataattttattttatatgatatcaagagaacatatatattagtaatttagaactatacttt  16809800                                                                               --------->YAB1               <---------ANAC58                                         <---------ICU4        <---------YAB1                                                 <---------ATHB51     <---------YAB1                                                    <---------AHL20(2)          <-     <---------AHL20(2)                                                --------->AHL20(2)          <- <----------DOF2                                                 ----------->GT1                   <- -------------->AGL15   --------->YAB1           --------->AHL20(2)    --------->ICU4     <---------AHL20(2) ---------DAG2 <---------ANAC46            ----------->GT1   <----------DOF2   ----------->GT1     -- --------GT1   <---------ANAC58           >>>>>>>>>TBF1    ---------->ID1  <---------AHL20(2)      -- ----DOF2<---------AHL20(2)            >>>>>>>>>TBF1      <-----------GT1  --------->AHL20(2)      <-   taccttttttattatttgtgtgttaaacatattctatagaagaagaagaaaatatatgtttttctttttgtaaataattaatcgtaatttgtttatttgg  16809900         <<<<<<<<<<GT-3b   <------MYB83   ----------->GT1   <------MYB46(1)  --------->MYB111(1)  --------->MYB111(2)                                 --------->AHL20(2)  --------->MYB59                                   --------->TOE2(3)  --------->MYB46(2)                       --------->ARR11(3) <--------P                                <---------ARR11(3) --------HSFB2a(1)                         <---------GLK1(2) -----MYB83  <----------DOF2              <---------RVE1(1) -----MYB46(1)                           ----------->ARR10 ------->HSFC1(2)                    --------->REM1(2)<---------AHL20(2)                 ---------->DOF2 ------->HSFB2a(1)                <---------ANAC46  <----------DOF2                <----------DOF2 --------HSFC1(2)            ------>ZmHOX2a(1)<-----------GT1                   ---------->ID1    ---   aaggttggtatttttctttggagagactttcctcttctgtggagagattttcttctttaattgagagttcaattctatctttctcctttttaaaagagag  16810000                                  ------>ZmHOX2a(2)                                  =============================HOX2a_HOX2a                                 <------ZmHOX2a(2)                             <------NtERF2                                 --------->CCA1(2)                      --------->YAB1                                 ==============================HOX2a_HOX2a     --------->ATERF1(1)                                --------->ARR11(3)                    --------->ANAC58                                --------->AGP1                        --------->ANAC58           <---------At4g35610  <---------ARR11(3)                --------->ANAC46        <---------MYB52(1)      --------->ARR14(2)                --------->AtLEC2      <---------MYB46(3)        <---------ARR14(2)                --------->ANAC58     <---------WOX13(1)        --------->RVE1(1)                  --------->ANAC58      ---------->DOF2    >>>>>>>>>ARR2           ---------->DOF2                  --------->ANAC46 <---------RAP2.3(1)   --------->ATHB12     --------->ANAC58                     --------->ANAC58 <---------ATERF1(1)  <---------YAB1        --------->ANAC58                     --------->ANAC58 ------>NtERF2 ------>GLK1(2)       ---------->DOF2    --------->YAB1 ------>ZmHOX2a(1)    <---------RAP2.6(2)    -   aattttgattgttagctcgttttctaaagcaaaagatctactagcatcactcttggtccttactcgccaagcaagcatggcgccttcttacaaagcctga  16810100                                                                <------MYB46(1)                                                                <---------DEAR3(2)                                                                <---------MYB46(3)                                                                --------->MYB52(2)                                                               <---------AtMYB61                                                             <-------GAMYB                                                            <---------MYB46(3)                                                           <---------TOE2(3)                                                           <---------AtMYB61                                                         <---------ANAC46                  ----------                                                     ------->TEIL     --------->ANAC46    --------->ATERF1(1)                                                  <---------YAB1<------MYB83              <------NtERF2                          <------MYB46(1)    <---------GLK1(1) --------->MYB111(1) <---------ANAC58 ------>ZmHOX2a(1)        <------MYB83       --------->GLK1(1)<--------P           <---------AtLEC2 <---------YAB1          --------->MYB59   <------ZmHOX2a(1)--------->MYB55(2)     <---------ANAC58 -------->TOE2(3)  ---------->DOF2     ---------->DOF2<-----------RAV1(1)        <---------YAB1    <-   ttccttattgactagagtttctaaagctaggtattttaaacaaaaggatttcatgaatgttgtggttggttcccgtccctcttatgcttggcgcagcatt  16810200             <-----------RAV1(1)            ------>ZmHOX2a(2)           <------ZmHOX2a(2)          --------->AGP1          --------->ARR11(3)                                                                        -          <---------ARR14(2)                                                                      ---          <---------AGP1                                                                          <--          <---------ARR11(3)                                                                      ---         <---------GLK1(1)                                                                       ----        ----------->ARR10                                                                       <----  --------->ANAC46                                                                              <----  --------->ANAC58                                                                             <-----  --------->ANAC58                *TSS                            --------->HSFB2a(2)         ------- <---------LBD16               <---------YAB1                     <---------HSFB2a(2)      --------->DAG2 ->RAV1(1)--------->ARR14(2)--------->ICU4                       <---------ANAC46 <---------GLK1(1) < --------REM1(2)     ---------->DOF2                 --------->GLK1(2)         ----------->GT1<------   atacacggacgagatctgttggagaaaggcattatgaagaacattggcaatggacaatctacaagtgtctggaatgacaaatggatatttgataaggctc  16810300       <----------DOF2   <---------ZAT18   ------>NtERF2  --------->DEAR3(1) --------->At4g35610 <------NtERF2 <---------At4g35610 -------->DEAR3(1) ------>At4g35610 -------At4g35610 ------>LBD16                                                  ------>MYB83 ----->ANAC46                                                  ------>MYB46(1) -----LBD16--------->YAB1                                     --------->ANAC46 --NtERF2--------->AHL20(2)                                  <---------MYB55(2) ----ATERF1(1)                                               --------->MYB46(3) -->ARR14(2)                                         --------->TOE2(3)                       -------- ---------ATERF1(1)          --------->ATHB12        --------->TOE1(3)                      <-------- ---ARR14(2)   <-----------GT1          --------->MYB52(1)<-----------GT1         --------->AtLEC2   cgcagcgcccttttaataaacaatctctgtttgatttggaactaatggtctcaaaccttattacccaccaaggctcttgggaccatgcattgttatcaga  16810400              --------->SPL7                                                              <--------P            <---------SPL7                                                              --------->ATHB12            --------->LBD16                                                             <---------MYB46(3)            ----------->HVH21                                ----------->GT1           --------->ICU4           --------->MYB46(3)                              --------->ARR14(2)          <---------YAB1          <---------LBD16  <---------ICU4          <---------ANAC46               --------->YAB1 ->YAB1   <---------At4g35610          ------>ZmHOX2a(1)  <------ZmHOX2a(1)    --------->YAB1 -YAB1  <-----------GT1    --------->YAB1 ------>ZmHOX2a(1)<---------ARR14(2) <---------YAB1   gttgtttttttcaccggacgttgttagaatcatgtcttatcctcctaacattggcctagaggatagtgacatttgggcttataatcgtaatggttgctac  16810500                                                     <---------ALFIN1                                                     ----------->RAV1(1)                                                   ------>MYB83                                                   ------>MYB46(1)                                                 --------->AtMYB61                                 --                                                 --------->DEAR3(1)                               ---                                                 <---------ALFIN1                                 <--                                                --------->MYB46(3)                               ----                                      --------->At4g35610           <-----------GT1              <---                                      <---------ZAT2<---------MYB55(2)                     --------->CCA1(2)                                      <---------At4g35610        --------->ANAC58         <---------ARR11(3)                           <---------CCA1(2)  <---------ALFIN1   --------->ANAC58         <---------ARR14(2)                       ------>ZmHOX2a(2)      --------->ANAC46   ----------->GT1          --------->ARR14(2)                      <---------At4g35610  --------->RAP2.6(2)   --------->ANAC46         --------->ARR11(3)                     <---------ARR11(3)  --------->At4g35610     --------->ANAC55(1)      --------->ARR11(1)                     --------->ARR11(3)  <---------ATERF1(1)     <---------ANAC55(2)    ----------->ARR10                  <---------WOX13(1)  --------->ZAT2--------->MYB46(3)              <------ZmHOX2a(1)                  <--------P       --------->At4g35610           --------->ANAC55(2)=================                <---------MYB46(3) <---------At4g35610 <---------ALFIN1             =================   attgtgaagagcgggaattggttgatctcacatcttaagcagcagcctccaccacccacacatgaacaagtaactcgctgtcttaaggagaagatttggg  16810600                                              <---------MYB46(3)                                        <----------DOF2                                      --------->At4g35610           --------->ANAC46           <---------ZAT2 ---->ZmHOX2a(2)                --------->ALFIN1 ------>GLK1(1)               <-----------RAV1(1) ----ZmHOX2a(2)               ------>ZmHOX2a(1)                                                   --- ----->ARR11(3)   <------ZmHOX2a(2)<---------ANAC58                                               <-- ------ARR11(3)   ===================HOX2a_HOX2a                                                  --- =====HOX2a_HOX2a--------->ARR11(3)<---------ANAC58       <---------MYB46(3)                    ----- ====HOX2a_HOX2a <---------ARR11(3)<---------ANAC46 <----------DOF2                            <-----   atctcaaaactctacccaagatcaaaatgttcctgtggcgagctctatcgggtgctttggctgtttcaacatgtttacaagctcatggtatgcatactaa  16810700  Previous    Next  AGI:  At3g45755.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09510.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) Range:  from: 16810234    to: 16811499    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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