Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <---------YAB1                                                                          <---------YAB1                                                                        -------->ATHB1                                                                        <---------AHL20(2)                                                                        --------->YAB1                                                                        <---------ICU4                                                                        <--------HAHB4                                                                        -------->HAHB4                                                                        --------->ATHB51           <-                                                                       <---------ATHB51            <-                                                                       <---------ATHB12    ----------                                                                       <---------YAB1   <------ZmHOX2a(2)                                                                       --------->ICU4   --------->CCA1(2)                                                                     ------>MYB46(1)   --------->AGP1                                                                     ------>MYB83      --------->ARR11(3)                                                                   --------->TOE2(3)   <---------ARR11(3)                    --------->ANAC46                      <------ZmHOX2a(2)--------->YAB1------>ZmHOX2a(2) -->TOE1(2)<-----------GT1   ---------->DOF2   --------->YAB1      <---------MYB59     <---------AGP1   caaaataacatagaaaccattcacatcagacaaaagactcgatttttaagcatagtttcgatcaaaaaacctaattattatcaaactaagatctaaagga  16808500                                                                                          --------->YAB1                                                                                       --------->YAB1                                                                                      <---------YAB1                                                                                    --------->YAB1                                                                                    --------->ATHB51                                                                                    <---------AHL20(2)                                                                                    <--------HAHB4                                                                                    -------->HAHB4                                                                                    <---------ICU4                                                                                   <---------ATHB51                                                                                   <---------YAB1                                                                                 ------>MYB46(1)                                                                               <---------MYB59                                 <---------TOE2(3)                     <------ZmHOX2a(2) <---------YAB1                            <------ZmHOX2a(1)                      <-------TEIL--------->TOE2(3)    <---------YAB1         --------->ICU4                         --------->ARR14(1)-------->ATHB1 ---------DOF2 <---------HSFB2a(2)                               <---------GLK1(2) --------->ICU4 --------DAG2  --------->HSFB2a(2)    <----------ID1             --------->ARR11(1)<---------ATHB12 >DOF2    <---------ZAT6<---------ANAC46  ---------->DOF2      ----------->ARR10 ------>MYB83   gctttttttatagtgttcgagtagttgtgaggattaagatgagacaaagacacaatttttaagcatagattcgatcaaaaacctaattattatcaaaact  16808600                                                                                               ------                                                                                               ------                                                                                               ------                                                                                            ---------            <----------DOF2                                                                 ---------    ---------->DOF2                                                                       <---------ZAT18  <---------MYB59        <---------ARR14(2)        <-------TEIL                           --------->PCF2   aagacctaaagaagcttttttgtagtgaattcgagtttaagatgagagaaagattcaatttttaagcacagtcgatgggttttgtaatccagagcccacg  16808700                                                   <---------LBD16                                                  ------->TEIL                                                  --------->MYB52(1)  --------->GLK1(2)                            --------->ANAC58  <---------ARR11(3)                           --------->ANAC55(2) --------->RVE1(1)                             <---------ANAC55(2)           --------->DAG2 --->ANAC58                                    --------->ANAC58            ---------->DOF2 --->ANAC58                            --------->MYB52(1)                <------ZmHOX2a(1) --->ANAC46  --------->ANAC58      <---------TOE2(3)                  <------NtERF2   ------->TEIL >DEAR3(1)   --------->ANAC58      <---------TOE1(3) --------->LBD16  <---------At4g35610           < >ZAT18    ---------->DOF2    <---------ZAT6--------->ARR14(2)        --------->At4g35610      <-----   aaaaaatctgaaggaaagcaattgaattttgagagttaaggtaagggttacgcaccggagaatgttataggcagaggaaaaggcgatgaaactagtcgga  16808800                       <---------ANAC55(2)                       <---------ANAC58                       --------->ANAC55(2)                       <---------ANAC58                       <---------ANAC46                       <---------ANAC55(1)                      <---------LBD16                    <---------MYB52(1)                    ----------->HVH21                   <-----------HVH21 <---------YAB1                <-----------------AGL1               --------->PCF5--------->ARR14(2)                         <---------ANAC46           <---------At5g28300     <---------MYB46(3)                 --------->CCA1(2) ------ZmHOX2a(1)----------------->AGL1                              ----------->HVH21      <------NtERF2 -NtERF2  <-----------GT1    <---------ARR14(2)                   <------ZmHOX2a(1)        <---------MYB46(3)   gaggatgcagttttacggtcccgttacgggagaaccgtggttattgacaagagagacaccaattctgaggagagacggggagagagacaatggtggctct  16808900                                                                       <---------ANAC46                                                                       <---------ANAC58                                                                       <---------ANAC58                                                                      ----------->STF1              <                                        <---------MYB52(1)            <-----------------AG   <xxxxxxx                              <------MYB46(1)                     <---------ICU4          ---------->DOF2                              <------MYB83                        --------->YAB1          <xxxxxxxxxx                    <---------ANAC46<-----------GT1              --------->ICU4           <xxxxxxxxxx                  *TSS        ----------->GT1               ----------->GT1            <xxxxxxxxxxxxx       <---------AHL20(2)    --------->MYB59              <------------CBF             <xxxxxxxxxxxxx      <---------AHL20(2)     <---------TOE2(3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxx      --------->AHL20(2)   --------->ICU4            ----------->GT1----------->TGA1 --------->AHL20(2)   ctagcaaattttttttgtatttttgtgtaattaggttatttcggtatttctactagggtgaattgcaaaaatgacgtttttggaaaatgaaataaagaat  16809000                                                                                                  <xx                                                                                                <xxxx                                                                                                <xxxx                --------->YAB1                                                                  <xxxx          --------->ARR11(3)                                                                    <xxxx          <---------ARR11(3)                                                                   xxxxxx       --------->AHL20(2)                                                                      ------  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         ------  ----------->RAV1(1)                                                                 <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 ------->GAMYB                  <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->MYB46(3)              <---------ANAC46 xxxxxxxxxxxxxxxsmallRNA(si3)                         <---------MYB52(2)         --------->MYB111(1) xxxxxxxxxxxxsmallRNA(si3)                            <------------MYB.PH3(2)   <--------P<xxxxxxxxxx xxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxsmallRNA(fl3)       --------->ICU4       <----------ID1       ---------->DOF2 --------->ALFIN1 xxxxxxsmallRNA(se3)--------->ALFIN1          ---------->DOF2     ----------->RAV1(1)<-------TEIL <xx xxxxxxxxxxxsmallRNA(si3)----------->GT1 ----------->GT1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <   atagcaccataaaatctataatgtgttgagtaatacttagatgtggtaaaaagacaacaaactctttccaacaaaaaagatggtaagtgcgtggagcacg  16809100                            <-------GAMYB                           <---------ANAC58                           <---------ANAC46                      --------->CCA1(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    ---------->DOF2 xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 --------->ANAC58               ---- xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                ---------->DOF2                  <--- --->ANAC58          --------->ARR11(3)   --------->ANAC46    --------->At4g35610          <---------ZAT14 --->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<---- xxxxxxxxxxxxxsmallRNA(le3)<---------ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)----- xxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                --------->ZAT14 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->AtLEC2     --------->At4g35610     ---------->DOF2---   agaagaattgaatatggctggatgatatggcgttgttttcatccaaacaattttcagtagcatcagcaaagcaaagtcttgaaaacaaagcagaacagta  16809200                                                                                                -----                                                                                                -----                                                                                            ---------                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                      <xxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             ---------->DOF2---------                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          --------->TOE1(3)<xxxxxxxxx                                                                          --------->TOE2(3)<xxxxxxxxx                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                   <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----------->AtSPL8                                         <-------TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------------AtSPL8               ----------->GT1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----- -----ZAT14                       <XXXXXXXXXXXXXXXXXXXXMIR870xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -- ---->ZAT14            <-------TEIL                     <---------------AtSPL8xxxxxxxxxxxxxxxxxxxxxxx -------->GT1 <----------DOF2<---------YAB1      ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   tagtacatatatttcgctttcgagcttcattttgtttggagaaatatcaaattgtttataagtacagaaaactaaaccctaaagatggtatggaacccaa  16809300     <xxxxxxxxxxxxxxxxsmallRNA(i)     ------->GAMYB  --------->MYB52(1) --------->MYB46(3) <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->ANAC58 --------->ARR14(2) ---->ANAC58 <---------GLK1(2) >ANAC58   <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxsmallRNA(i) xxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxsmallRNA(i2) xxxxxxx>smallRNA(i2) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(si3) xxxxxxxxx>smallRNA(fl3) xxxxx>smallRNA(se3) xxxxxxxxx>smallRNA(se3) xxxxxxxxsmallRNA(le3) xxxx>smallRNA(fl3) xxxxxxxxsmallRNA(si3) xxxxxxxxsmallRNA(se3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxsmallRNA(si3)                                                  <---------GLK1(2) x>smallRNA(i2)                                                      <---------ZAT2 x>smallRNA(fl3)                                                     <---------At4g35610 xxsmallRNA(si3)                                                 <-----------GT1 >ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(i)                          <-----------HVH21 xxxxxxxxxxxxxxsmallRNA(s2)                            --------->HSFC1(2) xxxxxxxxxxxxxxsmallRNA(si3)    <---------ANAC58       --------->HSFB2a(1) ---->ANAC46 <---------ARR14(2) <---------ANAC58       <---------HSFB2a(1)   <---------MYB46(3) --------->RAV1(1)  --------->ZAT14           <---------YAB1  <---------CCA1(2)                  xxxx >smallRNA(si3)     <---------ZAT14   ------>ZmHOX2a(1)<---------HSFC1(2) <----------DOF2       xxxxx   gcaacaacggaagtcgattctctgaactcaaattgcgttcctcgctctataattcgaaactcccatatcacagcttctttggttacagtctctatctggt  16809400  Previous    Next  AGI:  At3g45750.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45760.1); similar to hypothetical protein OsJ_027139 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43656.1); similar to Os08g0559900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062505.1); contains domain SSF81631 (SSF81631); contains domain PTHR12271:SF13 (PTHR12271:SF13); contains domain PTHR12271 (PTHR12271); contains domain SSF81301 (SSF81301) Range:  from: 16804596    to: 16808918    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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