Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->YAB1                  ---------->DOF2                             <---------------AGL15          <------ZmHOX2a(2)                 --------->ETT(2)                        --------->LBD16                 <---------ETT(2)                        <---------------AGL15                <------ZmHOX2a(2)                       <---------HSFB2a(2)                  <-------               <---------ARR11(3)--------->YAB1         --------->HSFB2a(2)                 <--------   --------->ANAC58          --------------->AGL15<-----------ARR10                         ---------   --------->ANAC58          ============================================MADS_MADS          <-------- -->ZAT14      --------->ARR11(3)<-----------GT1  <---------ARR11(3)       <---------YAB1  <---------ATHB12 ---ZAT14  ---------->DOF2<-----------GT1         --------->ARR11(3)      --------->AHL20(2)---------   gtggcacagaataaaaagatcgacagttttactaataacagttcaaattgaacatcttcccgatcaaagaaactaatattatacactaatccaataaaat  16764400                                                                                       <---------AtLEC2                                                                                      <-------TEIL        --------->ARR14(2)                                                          --------->LBD16        <---------ARR11(3)                                                         <---------ANAC46        --------->GLK1(2)                                                    <---------YAB1      ----        --------->ARR11(3)                                                 <---------ICU4       -----        <---------ARR14(2)                                        ---------->DOF2  <---------ANAC58       <---------CCA1(2)                                      --------->ANAC58  <---------ARR14(2)  < --AHL20(2)                                                   --------->ANAC58  --------->ARR14(2)  < -AHL20(1)                                            <-----------ARR10    --------->YAB1     ------- >AHL20(2)--------->TOE1(3)               <------ZmHOX2a(2)   --------->ANAC46  ------->TEIL  ------- -AHL20(2)--------->TOE2(3)         <-----------HVH21 --------->GLK1(2)   --------->ICU4   ---------- >YAB1 <---------ARR14(1)          <----------DOF2   <---------GLK1(2) <-------TEIL<---------ANAC58<-   tgagttagcaaatcttaaactaatccaaagtatcaaactttcagatcgaaatcgagaatctaacaagccaaagtccataatgaatccgtgcatgggacgc  16764500                       ------->GAMYB                      --------->ANAC58                      --------->ANAC46                      --------->ANAC58 ----->MYB52(1)     <---------DOF5.7(2) ------>HVH21      <---------WRKY38(1) ---------MYB46(3) <---------WRKY12 ---------DEAR3(2)--------->DOF5.7(2)                              --------->ARR11(3) -->ANAC58    <---------O2  ----------->GT1                        <---------ARR11(3) -->ANAC58   <-----------------------TaNAC69(2)                   <---------GLK1(2) ->HVH21    --------->CCA1(2)  --------->ZAT14          ------>NtERF2                        -------- --------DEAR3(1)<-----------HVH21  ----------->GT1    --------->ANAC46        --------->GLK1(1)   gacggttcaataagagacgcgtcaacgaaacagtacaatcgaaaaaaaaacatatcgacgacaatccaaaatctccatgagatttctacatacaatcgga  16764600                                                                      <---------DEAR3(1)                              --------->LBD16                        <-------TEIL                             --------->ANAC46                       --------->GLK1(2)                             --------->HSFB2a(2)                    --------->CCA1(2)                             <---------HSFB2a(2)                    --------->ARR14(1)               ------>ZmHOX2a(2)                                   <---------ARR14(2)             --------->ARR11(3)                                    <---------GLK1(2)             <---------ARR11(3)                                    --------->ARR14(2)               -         <-------MYC3       <---------LBD16                        --------->ARR11(1)           -----   --------->ZAT14  <---------ATHB12                     <---------TOE2(3)                  --------- ->YAB1  ------->MYC3<---------ICU4                      <---------TOE1(3)            ----------->RAV1(1)   atcagtaaacacgttgatctcaataactactccggaactaaaatcgaaacaccagaattagggttttgagattcggcgattcaaatcccaacatgaaaga  16764700                                         <-------TEIL                                        --------->ARR14(1)                                        --------->CCA1(2)                               --------->REM1(2)     <---------YAB1   --------->MYB52(1)--------->GLK1(2)     <---------ANAC55(2)  --------->At4g35610 -------->WOX13(1)   --------->TOE2(2) --------->ARR11(1)   --------->At4g35610  --------->ALFIN1 ------>GT1 ----------->GT1   <---------ANAC46      --------->GLK1(2)          <---------O2 ->DOF2   <---------ZAT14 <---------At4g35610 ------>ZmHOX2a(2)              <---------ZAT14   gtcaattacgagagaagtgaaaacatacggctgagtagagagattcgatcggagattgtggaagatgaagaagattgagagaagtgggagattgcaagag  16764800                                            --------->ARR14(2)                                            <---------ARR14(2)                                            --------->AGP1                                         --------->HSFC1(1)                                         <---------HSFB2a(2)                                         --------->HSFB2a(2)                                    <------NtERF2  <------------CBF                                    <---------At4g35610      --------->YAB1                         -                                  <---------RAP2.6(2)   <---------MYB59                             <                            --------->GLK1(2)     --------->ATHB12                                <--                           <---------ARR11(3)--------->CCA1(2)                       <---------GLK1(2)                           --------->ARR11(3)<------ZmHOX2a(2)         <-----------GT1        <------                         ----------->ARR10  <---------ARR11(3)        --------->AHL20(2) <---------YAB1                  *TSS<---------ANAC46<----------DOF2  ----------------->AGL1    <---------MYB52(1)<-   acaacaagtgagagagattggatggctgagattttggccgcttctagatccacgattgcctaataagaagaattaactatgcccttagattattagttta  16764900                                            <---------DEAR3(2)                                            <---------MYB46(3)                                          <------NtERF2                                          --------->ATERF1(1)     ------>ZmHOX2a(2)                   <-----------HVH21    <---------At4g35610                 <---------ANAC58                                            <    --------->At4g35610                 <---------ANAC58                                           <-    --------->GLK1(1)                   <---------ANAC46                                      <------    <---------GLK1(1)                   <---------DEAR3(1)                                    -------    <------ZmHOX2a(2)                  <------NtERF2                                         --------   <---------ARR14(2)                 <------MYB46(1)                  <---------MYB46(3)   <--------   --------->ARR14(2)                 <------MYB83                    <---------AtMYB61   --------->YAB1   <---------AGP1                    <---------DEAR3(1)             <---------MYB46(3)    <---------ICU4   --------->ARR11(3)               <--------P                     --------->ALFIN1       <--------ATHB1   ------->TEIL                    <---------ANAC58                <---------AtMYB61      --------->ATHB12 -------->ANAC55(2)                <-------GAMYB---------->DOF2  <------MYB46(1)         <---------ATHB12 ---------ANAC55(2)                <---------ANAC58        --------->AHL20(2)            <---------YAB1 ---------GT1                <---------YAB1<---------DEAR3(1)    <------MYB83            --------->ICU4 ---AHL20(2)               --------->AHL20(2)<-------GAMYB <---------AHL20(2)        ------->GAMYB -- --------LBD16   <---------LBD16  <---------MYB46(3)      --------->AHL20(2)   <-----------GT1<------   ttacggatctgccactatctccggttcgattatttttggttggcgtcggttaaagactgatttaatttggtggtggttttatttcaacccaatgattata  16765000 ---------AHL20(2) --------AHL20(2) ---AHL20(2) -->AHL20(1)              <---------RVE1(1)       <---------AHL20(2) ->AHL20(2)         --------->ARR14(2)           --------->AHL20(2) -YAB1   ---------->ID1  <---------MYB52(1) ----------->GT1 ------->AHL20(2)   <---------ARR14(2)<---------ATHB12                     <-----------GT1 ---AHL20(1)       <---------GLK1(1)--------->GLK1(1)                   ----------->GT1   ttttaatttttgttcttctacatatccgatattttcagaaatcatgtggaaataaatctaaaaatttagaaatttagttacaagttttataaaactaatc  16765100                                    --------->HSFB2a(2)                              <---------YAB1                            <---------AHL20(2)                            --------->AHL20(2)                            --------->ATHB51                            <---------ICU4          ------>ZmHOX2a(2)                             ---                           --------->ICU4         <---------ARR11(3)                           ------                         <---------ICU4           --------->ARR11(3)                           ------                         --------->YAB1         <---------YAB1                                 ------                        --------->ICU4 --------->AHL20(2)                                     <------                        <---------ATHB51      --------->YAB1                                  -------                        <---------AHL20(2)   --------->ICU4                                   <------                        --------->AHL20(2)   <---------YAB1                                 <--------                       <---------AHL20(1)  <---------ICU4                                   ---------                   --------->YAB1   <---------HSFB2a(2)      --------->LBD16              <----------         --------->YAB1--------->AHL20(2)  --------->YAB1  <---------LBD16                -----------         --------->AHL20(2)<---------YAB1 --------->ICU4  --------->MYB52(1)       --------->YAB1----   gtctaatacaatgaaatttcatcaaaataattatttttctataaattatgatgatctaagtaccggattaagaacaaattacaaataagaatactgtaca  16765200 -------->RAV1(1) --->ANAC58 --->ANAC46                  --------->AHL20(2) --->ANAC58                  --------->AHL20(1) ---ZAT18                    <---------AHL20(1) -->ZAT14                  --------->ARR11(3) ---ZAT14                  <---------AHL20(1)                                        <----------DOF2 -ZAT14                    <---------ARR11(3)                --------->ANAC58     <---------ARR11(3) >ZAT14                    --------->AHL20(1)                --------->ANAC46     --------->ARR11(3) -----AtSPL8      --------->bZIP60(1)       --------->AHL20(2)           ------>ZmHOX2a(1)------->TEIL ---->AtSPL8      <---------bZIP60(1)----------->GT1         --------->ANAC58    <---------CCA1(2) ----->ANAC46<---------ANAC55(2) <-----------GT1          <-------TEIL  --------->TOE2(3)<---------CCA1(2)   caacaaaactcaaacatgtgacttcagaaaatattttactcgtaaattaaaacataaacatacacgaatactatccttcatatatatctttgtatctaag  16765300  Previous    Next  AGI:  At3g45630.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA binding [Arabidopsis thaliana] (TAIR:AT5G60170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21772.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 16759159    to: 16764818    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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