Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->KAN4(2)                                                                                         <---------HSFB2a(1)                                                                                         --------->HSFB2a(1)                                          ----------->GT1                              ==============                                         <---------ARR11(3)                            <------ZmHOX2a(1)                       ----------------->AGL1   <---------TOE2(3)                      ==============                       <-----------------AGL1  <-----------GT1                       <---------TOE2(3)                  <---------ICU4   --------->ANAC58                              --------->YAB1                  --------->YAB1   --------->ANAC58                             <---------YAB1              ------>ZmHOX2a(1) <------ZmHOX2a(1)                               <---------TOE2(3)   aaattcaatttgattcctagtcatgaccagaacaggaacgctagatgttaaacgttttctaatacgttgcacatcgtccattaacataaggatgttctct  16736700                                                                                             <-------                       <---------MYB59                                                       --------                    <---------WRKY18(1)                                                      --------                   ----------->HVH21                                                         --------            ------>ZmHOX2a(2)                                                                --------           --------->GLK1(1)                                                            --------->WOX13(1)           <---------GLK1(1)                                                           --------->MYB46(3)           <------ZmHOX2a(2)                                                      --------->ANAC58          --------->ARR11(3)                                                      <---------ANAC55(2)          <---------ARR11(3)                                                      --------->ANAC46          <---------ARR14(2)                                                      ----------->GT1 <--          --------->ARR14(2)                                                      --------->ANAC55(1)          <-----------ARR10                                                       --------->ANAC58<--          <---------AGP1                                                          --------->ANAC55(2) ==================HOX2a_HOX2a                     --------->YAB1            ----------->HVH21    --- =================HOX2a_HOX2a                     <---------ATHB12         ----------->GT1<---------ATHB12   tgctcagaaacagatctctccatgacctaaaaacattcaagacaaaacaccaataacaagattaggggaaattggacatgtgaaacgtaacaatcaagta  16736800                              ------>ZmHOX2a(2)                           --------->ATHB12                           -------->HAHB4                           <---------ICU4                                          --------->ANAC58     -------->P            --------->YAB1                   ---------->DOF2        --------->ANAC46 --ANAC55(2)              --------->ICU4           ------>ZmHOX2a(2)               --------->ANAC58 ->ANAC58                 <---------YAB1       <---------YAB1                   --------->ZAT18 ->ANAC55(2)            --------->YAB1       --------->CCA1(2)             <--------P ->ANAC58               <---------ICU4      <---------ARR11(3)             <---------MYB52(1) --->GT1            <---------YAB1          --------->ARR14(2)  --------->ANAC46<---------ZAT18 ----------MYB.PH3(2)  --------->ICU4       --------->ARR11(3)--------->ANAC58  <---------WRKY38(1) -------MYB52(2) <---------ARR11(3)         <---------ARR14(2)--------->ANAC58  <---------WRKY45 ------>MYB46(3) --------->GLK1(2)--------->At5g28300 <------ZmHOX2a(2)   <-------GAMYB            --   acaaacttaccaattcaaaaatctgataatgatcgcagtaaatggagatatgatcgatccctaaacgcacaacttcggttagtccacgcttcaatgccat  16736900                                                                                                    -                                                                                                  <--                                                                                               <-----                                                                                               ------                      -------->P--------->YAB1                               --------->ETT(1) <------                     ------->GAMYB                                          ---------->ID1 --------->LBD16               ----------->GT1  <---------ICU4                      --------->YAB1        --------->ANAC58      --------->TOE2(3)      --------->YAB1                        <---------YAB1         --------->RAP2.6(2)      ------->GAMYB <---------MYB111(1)           --------->At4g35610     <-----------RAV1(1) -------     --------->MYB46(3) ------->GAMYB             <---------At4g35610   <----------DOF2   ------->GAMYB   <---------ALFIN1 --------->MYB46(3)       <----------DOF2   <---------GLK1(2)          --------->ANAC58 ------->At4g35610<-----------GT1    ------->TEIL ----------->RAV1(2) <---------YAB1     --------->MYB46(3)   aagctcaacctccataagtgtaacaaccctagaatcatgaacttgttctttcatctgaaacaagagattatcatctttgtcgcaaattgcaaccgcaaat  16737000                               ------>MYB46(1) -------->LBD16              <---------MYB59                               <---------LBD16 -------LBD16                --------->AtMYB61                             --------->LBD16 ----ARR14(2)               --------->MYB46(3)                           <---------LBD16            - --->ARR14(2)        ------>ZmHOX2a(1)                             <---------GLK1(1)      --------->At4g35610 ---GLK1(1)   <---------MYB46(3)                                <---------YAB1         <------ZmHOX2a(2) -->GLK1(1)<-----------RAV1(1) ------>MYB83---------->DOF2    --------->YAB1 --------->LBD16       <-   cccgctaatagctctgtggtttcctcgctaaccaaacccttgaagtaaagactatacgattcaattttgatttctcccgcgggttttggatcatcttcca  16737100                                                   --------->ANAC55(2)                                                   <---------ANAC55(2)                 <----------DOF2                                 <---------HSFB2a(2)                    <---------LBD16==============     <-----------GT1             ------>ZmHOX2a(1) --------->ANAC55(1)<---------ARR14(2)   --------->YAB1   <----------DOF2               --------->HSFB2a(2)                  --------->ARR14(2)  <---------YAB1 ------>TEIL          <-----------GT1    <---------AHL20(2)      <-----------GT1    <---------TOE1(3) --------CCA1(2)    <----------DOF2 ------------>CBF       ------------>CBF        <-----------GT1   tgtatctttactgtttttgagtctttacagttctcctagacaatttatcgaacacttaatgtgcaattttcagttctgggttttttaagcttttgataac  16737200                ----------->HVH21              --------->ANAC46              --------->ANAC55(2)              --------->O2              <---------O2              <---------TGA1a              --------->TGA1a              =================================================bZIP_DOF              <---------ANAC55(2)        --------->ZAT18                        ----------->GT1    --------->DAG2                  <---------ANAC58  <----------ID1   ---------->DOF2         <-----------GT1     <----------ID1  --------->MYB52(1)--------->LBD16   =====================bZIP_DOF    <---------ANAC58  ----------->GT1    <---------ARR11(3)       <-- =======================bZIP_DOF    <---------ANAC46---------->DOF2      <-----------GT1  -----------   caaaaaaaagttccctacgtgaccatgtttatcagtttgtgtgtgtaaaacgaaaaaagaaaaaaaaacggagattatctctccgaaaaaaaaacaattt  16737300                                      ----------->TBP                                      --------->AHL20(2)                                      <---------AHL20(2)                                  <---------AHL20(2)                 <------------CBF --------->AHL20(2)                                      ---------->DOF2               --------->ICU4     <-----------TBP            ---------->ID1             --------->YAB1 ----------->GT1--------->ATHB51<-----------TBP             <-----------GT1       --------->YAB1 -------AtLEC2 <---------YAB1  ------->TEIL          --------->YAB1          <---------YAB1  -------- ->CBF  ---------->DOF2 ------>ZmHOX2a(1)         --------->GLK1(1)       --------->GLK1(2) ---------   gaatggtggaaaaagacattattgtcctctatgtatatatataaattcggagaaatcatatttttcgtcttcagaaattctgaatcagaatcaaaaggta  16737400                                         --------->ARR14(2)                                        <-                                   --------->ARR14(2)                                              --                               --------->HSFB2a(2)                  --------->ARR11(3)           ----                               <---------HSFB2a(2)                  --------->GLK1(2)          ------                              ------>ZmHOX2a(2)                     <---------ARR11(3)         <-----                            --------->ARR11(3)                     --------->RVE1(1)         <-------  <---------DAG2            <---------AGP1                       --------->AHL20(2)          --------  <----------DOF2 <---------ANAC58 <---------ARR14(2)    <----------ID1                    --------->AHL20(2) --->GT1          <---------ANAC58 --------->GLK1(2)     ----------->GT1                   <---------AHL20(2) >DAG2          --------->ARR11(3)<---------GLK1(2)    ---------->DOF2           <---------ANAC46<---   attccttttccattgaaatttcttgatattgatctggaatctggtttcgcacaaaaaaaaagaaaaaaaaaatctgtaatctggtttggatatatatata  16737500                                                 <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <-----------GT1                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------AHL20(2)                   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->AHL20(2)               <---------AHL20(2) <---------AHL20(2)                --------->AHL20(2) --------->AHL20(2)                <---------AHL20(1)                          <---------ANAC46 --------AHL20(2)                  --------->AHL20(1)                          <---------ANAC58 ------->AHL20(2)                 <---------AHL20(2)               --------->AHL20(1) ----->AHL20(2)                  --------->ICU4<----------DOF2     <---------AHL20(2)   --------->AHL20(1) --->AHL20(2)               ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->AHL20(2) ----AHL20(2)            <-----------RAV1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)----------->GT1 --AHL20(2)           --------->ARR11(3)  <-----------GT1          --------->AHL20(2)   <---------AHL20(2) ->AHL20(2)           --------->GLK1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ANAC58 ------AHL20(2)<----------DOF2   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        --------->ARR11(3)     <   tatatatataaataacccttttaaaatctgttgtaaatattttaaaacccttttaaaatcccttgtaaattttttaaaatttcttgtaaattttttaaaa  16737600  Previous    Next  AGI:  At3g45570.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G45580.1); similar to zinc finger family protein, putative [Solanum demissum] (GB:AAT40530.2); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 16736079    to: 16737101    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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