Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ----------->RAV1(2)                                                                    <-            --------->At4g35610                                                                    --         ------>ZmHOX2a(1)                                                                    -------       ------>ZmHOX2a(2)                          --------------->AGL15                      <-------     <---------ARR11(3)                           <---------------AGL15                   --------->GLK1(2)   ----------->ARR10                             ----------------->AGL3                  <---------GLK1(2) <---------ANAC58                        --------->ARR14(2)                            ----------->ARR10 <---------ANAC58                        <---------ARR14(2)                 --------->TOE2(3)<------- <---------ANAC46                --------->ARR11(3)                      <-----------GT1 --------->ARR14(2) ->RAV1(1)  <---------At4g35610  <---------ARR11(3)            <-------TEIL --------->TOE1(3)--------   atggcttgatcctcatctgagactaaaacatttaagttctctaaatctgctactatatgaagaaattcatcgatattaccttcaatagagagattctcgg  16707400                                                                                               <-----                                                                                               ------                                                                                             <-------                                    --------->LBD16                                         <--------                                  ----------------->AGL1                                    --------- --------ARR11(3)                 <---------LBD16                                          ---------- ------->ARR11(3)               --------->ARR14(2)                                       --------->At4g35610 -->TOE1(1)                     <---------ARR14(2)                                       <---------ZAT2 --HSFB2a(2)                 --------->CCA1(2)   <----------DOF2               --------->HSFB2a(2) --LBD16             --------->At4g35610      --------->ARR11(3)   <---------ARR14(2)    <---------At4g35610 ->HSFB2a(2)         <---------At4g35610      <---------ARR11(3)   --------->ARR14(2)    --------->ZAT2   acatcttgaagctatagagcttctgcttcagatatatccggtttgggagagctttagacatgtagagcctatccaaggcttccagcatcgcagcagcaga  16707500      --------->TOE2(3)              --------->ANAC46      --------->YAB1         ------>ZmHOX2a(2)   <----------DOF2          <------ZmHOX2a(2) ----At4g35610             --------->ARR14(2) --->At4g35610             <---------ARR14(2)               <----------DOF2 ----RAV1(2)     ------>ZmHOX2a(1)   --------->ANAC58      <---------ANAC58                <--------- -At4g35610      ===================HOX2a_HOX2a     <---------ANAC58              <---------HSFC1(2) >At4g35610      ==================HOX2a_HOX2a      <---------ANAC58              --------->HSFC1(2) ->RAV1(1)      --------->TOE2(3)    --------->ANAC58      <---------ANAC58    ---------->DOF2   tgtctctttcttaatcttcctcaaaacccgatctgaaacactcaacacgatggtgcttctggcttttctcttcttctcttcaaaagcttccatcttttct  16707600                                                              --------->GLK1(1)                                                             --------->ARR14(2)                                                             <---------ARR14(2)                                                             <---------GLK1(2)                                                            --------->At4g35610                                ------->TEIL           <------NtERF2                               <---------GLK1(2)      ------>NtERF2                       --------->GLK1(1)          <---------DEAR3(1)     <----------DOF2   <---------GLK1(1) <----------DOF2    <---------At4g35610        ----------->RAV1(1) -DOF2            <---------At4g35610<----------DOF2 <---------DEAR3(1)         ---------->DOF2     -   cgttcttctttctcatcttcatcagatttctctgaatctctttctttccccatcggcgtctcagattcccttagaacagcacttaagcccaacatatcaa  16707700                    <---------ALFIN1                                                             ----                   ----------------->AGL1                                                  <---------MYB46(3)        <---------ARR11(3)            --------->MYB46(3)                                 <---------MYB52(1)        --------->ARR11(3)            --------->ANAC58                               <---------At5g28300      ----------->ARR10               --------->ANAC58                              <-----------GT1 -  <---------At4g35610               --------->ANAC46                              *TSS<------------MYB.PH3(1)  --------->At4g35610    <---------ANAC46 --------->AtMYB61             <---------HSFB2a(2)--------->MYB52(2) -------->ZAT18  ------>ZmHOX2a(1)  <---------ALFIN1      --------->TOE2(3)    ----------->GT1 <-----   tgtgagctaagagcttctccttccacatcgtgtaatccccacgaccatcaaacttctcaacctctattcttgctccagacatggtttaaccgtttgttaa  16707800                                                              --------->YAB1       --------->MYB46(3)                                   --------->ANAC58     <---------ARR14(2)                             <---------GLK1(1)     --------->ARR14(2)                             --------->GLK1(1)  --------->ANAC46                                 <---------ARR14(2)  --------->ANAC58                                 --------->ARR14(2)  --------->ANAC58                                <------ZmHOX2a(1)                                 -  --------->ANAC55(2)                    --------->GLK1(2)  --------->ANAC58                     ----  <---------ANAC55(2)                    ------>MYB83       --------->ANAC46          --------->MYB46(3) <---------LBD16                         ------>MYB46(1) <---------ZAT18      <---------ANAC58 ------ ----->ZAT6 --------->MYB52(1)          --------->WOX13(1)<---------ALFIN1    <---------ANAC58 ------ -------->MYB52(1)      --------->MYB46(3)       --------->ICU4           <---------DAG2     ------>MYB46(1) ------GT1<---------MYB52(2)          ------------>CBF   --------->ZAT18  <----------DOF2    ------>MYB83   cactacggaaccacaaacggactgtaaccaaggctctaataccaatctgtaaggatttgcccactcaaaacgtcgacttttcttgagaacaaaccaaaca  16707900       --------->ANAC58       --------->ANAC46       --------->ANAC58                           --------->ANAC58    ---------->DOF2   --------->AtMYB61                              --------->ANAC46 <---------------AGL15 -------->ANAC46        <-------GAMYB             --------->ANAC58 --------------->AGL15 ----->ANAC46          <-----------RAV1(1)     --------->ZAT14     --------->TOE2(3) --->ANAC46--------->ANAC58         <---------ZAT14                --------->TOE1(3) --------->DAG2 --->YAB1  --------->ANAC58        --------->ALFIN1                <----------DOF2  ---------->DOF2 -   caacaccacaagcaagaaaacctctctgttggacagagtgttgagacagaacacacaacaagacccaaactttaaagagaaacacagaaagtgcaagaac  16708000                                                                                  --------->ANAC46                                                                               --------->ZAT18                                                                             <---------ARR14(2)                                                                         --------->ANAC58                                                                        <---------LBD16                                                                      --------->ZAT2                                  --------->ZAT14                     --------->ZAT14                       <------MYB83                   ----------->RAV1(2)--------->ANAC58                       <------MYB46(1)     --------->MYB46(3)       <---------ZAT14                      --------->MYB46(2) ----------->RAV1(1)  <------NtERF2  --------->ARR14(2)              --------->ANAC58    <---------ZAT18   --------->TGA1a --------->ZAT14              --------->ANAC58    <---------ZAT14   --------->O2  xxxxxxxxxxxxxxxx>smallRNA(i)            ---------->DOF2      <-----------HVH21  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---            ==================================================bZIP_DOF<---------ZAT14         xxxxxxx -------->MYB52(1)    --------->MYB59    =========================RAV <---------ZAT2       <---------ZAT6   acaaacagagaacacaaagcaagtttggtaacccagttcacatcaacagatgctacgtctgggccgagactgtgctcggaatccactaaattagagatag  16708100                   ----------->HVH21                           <-----------GT1                      <          <---------ICU4                            --------->ZAT18         --------->TOE1(2)  <-----       --------->YAB1  <---------ALFIN1             <---------ZAT18    ------>ZmHOX2a(1)       ------ ------ZAT6      --------->ANAC46   --------->ZAT14 <---------ZAT14    <---------HSFB2a(2)    ------- xxxxxxxxxxxxxxx>smallRNA(l2)     --------->ANAC46  --------->ZAT14    --------->HSFB2a(2)    -------   tgtttacaagaagaattacaagtgaccactcgatacccttcactagtactcgagttcactctgtatcactctcctagacctaagaaactctgttacaagc  16708200       --------->YAB1       <-----------GT1    --------->YAB1    <---------ICU4   <---------YAB1                   <----------DOF2 --------->YAB1                  ------>NtERF2 ---------YAB1                  --------->ANAC46 ----HSFC1(2)                   --------->ANAC58 --->HSFC1(2)                   --------->ANAC58                          <----------DOF2 -->ANAC58            <---------ARR11(3)                           <---------ZAT18 -->ANAC58            --------->ARR11(3)                        ---------->DOF2<-----------GT1   ttctgataataacaagtctctcaatatctcttagacgcctttgttctcacaactctctcaataacctagagcacctcttttatactgaatacaactaggg  16708300  Previous    Next  AGI:  At3g45520.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.0e-308 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 16703691    to: 16707782    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g45525.1    Description:  similar to nucleic acid binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G45480.1) Range:  from: 16708258    to: 16708813    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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