Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->ANAC58                 --------->AHL20(2)                                      --------->ANAC58                 <---------AHL20(2)                             <-----------RAV1(2)              ----------->GT1                              --------->ARR11(3)        --------->GLK1(2)                                  <---------ARR11(3)       <---------GLK1(2)                                  <---------CCA1(2)               ---------->DOF2    --------->YAB1            <---------ARR11(3)         <---------ARR11(3)             >>>>>>>>>MYB98 -------------AGL15           --------->ARR11(3)         --------->AHL20(1)           ------>ZmHOX2a(1) ------------>AGL15          <---------CCA1(2)           <---------AHL20(1)     <-------TEIL   ctaaaatcagaatctctagttaaataagtatatatctactagtttcttctcaactccaatatatcttcaggtattaagcaaatacatcctaacaaagaaa  16680100                           <---------GLK1(2)                <------MYB83               --------->MYB46(2)                   <---------At4g35610               <---------TOE2(3)                    <---------ZAT2               --------->MYB59                      --------->ZAT2               --------->MYB111(1)                  --------->At4g35610         <---------------AGL15                     ------>MYB83         --------------->AGL15              --------->YAB1        ----------------->AG               <-------TEIL                                           <--        <-----------------AGL1         --------->AHL20(1)                          --------->ANAC58        ----------------->AGL1         <---------AHL20(1)                          --------->ANAC58        ----------------->AGL3         --------->ARR11(3)              --------->ZAT18  --------->ANAC58        <-----------------AG           <---------ARR11(3)    ---------->DOF2       --------->ANAC46  --------->YAB1<------MYB46(1) ----------->GT1    ------>MYB46(1)     <---------ZAT18  --------->ANAC58   caattcataatccaaattaggtagacacagaaacttgtaaaaatattcataccaagctgaatacaaagtcaagtccaccatgttcacgccaagtactcgt  16680200                                                        --------->ARR11(3)                                                       --------->YAB1                                                       <--------ATHB1                                                      <---------ATHB12                                                      <---------YAB1                               --------->LBD16        --------->ICU4                              <---------ANAC46    <---------ATHB12                         --------->At4g35610   <---------MYB111(1)                         --------->ZAT2        --------->MYB46(3)                         <---------ZAT2        <---------MYB46(2)                         <---------At4g35610   --------->AtMYB61                 --------->ATHB12             --------->ANAC58                 --------->WOX13(1)                <---------ATHB12 --------->ZAT14 ------>MYB83                <---------ATHB12                <---------YAB1--------->ANAC55(2)------>MYB46(1)     ---------->DOF2             --------->TOE2(2)<---------ANAC58--------->ANAC46  --------->ANAC58  --------->YAB1 --------DOF2--------->TOE1(2)<---------ANAC58--------->ANAC58  --------->ANAC58 <---------ATHB12   ctttggcatttgatacctatgatttgcagctcccgtgttctcatcaacaccaaacaatgattttgaacgaaaaaaggccatcaatcagacagaaattgaa  16680300                 <---------ANAC58                 <---------ANAC58                 <---------ANAC46          <---------ZAT14          --------->ZAT14      --------->ARR14(1)     <---------ARR14(2)                                                                   <---------ICU4     --------->ARR11(3)                                                                  --------->ICU4     <---------ARR11(3)            <---------ANAC58                             <---------At4g35610     <---------GLK1(2)             <---------ANAC58   <-------TEIL              --------->At4g35610     --------->ARR14(2)     --------->DAG2     <------ZmHOX2a(1)              <-----------RAV1(2)   ----------->ARR10       ---------->DOF2  <-----------RAV1(2)    <---------ANAC46      <---------YAB1   --------->ANAC58   --------->YAB1      ----------->RAV1(1)      <---------ANAC58    --------->YAB1   --------->ANAC58 --------->GLK1(2)    --------->MYB46(3)        <---------ANAC58  ------->TEIL   cggacaagatactgtagtggcgaatcagaaaaagtttacttgaacaacaggagatgtgcatcaacatttgcctgcatttctcagatgaatcataattcaa  16680400                                                 <---------------AGL15                                                 --------------->AGL15                              -                                                 ------>ZmHOX2a(1)                                  <                                                --------->TOE2(3)                                   -                                             <---------ARR14(2)                                     <          <----------DOF2                    --------->ARR14(2)           ---------->DOF2        ----  --------->ANAC58                          <---------CCA1(2)            <---------ATHB12    <-------  --------->ANAC58                        --------->YAB1       --------->YAB1           ---------->DOF2   gctcaagctaagctttcttctctcccttcccatggctcagaaaatcatatcctcaatttagaaaatcacaatgaaatcaagccgatgggagaaagcacag  16680500            <------NtERF2                             ------>ZmHOX2a(2)           ------>NtERF2                             <------ZmHOX2a(2)           <---------ATERF1(1)                      --------->ARR14(3)          --------->DEAR3(1)                        --------->ARR11(3)          --------->RAP2.6(2)                       <---------ARR14(3)          --------->RAP2.3(2)                       <-----------ARR10          --------->RAP2.3(3)                       <---------ARR14(2)         --------->RAP2.3(1)                        --------->ARR14(2)         --------->ERF1                             <---------AGP1         --------->ATERF1(1)                   ----------->RAV1(1)         --------->ORA47(2)                    ------>NtERF2                                     <---        <---------At4g35610                    <---------RAP2.6(3)               <---------------AGL15        <---------ATERF1(1)                   ----------->HVH21                  --------------->AGL15  <------NtERF2                               --------->ETT(2)      <-----------RAV1(2)        ------ ------>NtERF2                                --------->DREB2C(2)  <------ZmHOX2a(2)         -------- -------->bZIP60(1)                           *TSS  <---------ARR11(3)          <-----------------AGL1 ---------ETT(2)                              <---------ETT(2)   --------->GLK1(1)     <---------TOE2(3) -------->ETT(2)                              --------->At1g77200<---------GLK1(1)    --------->DAG2 ---------bZIP60(1)                         ------>NtERF2 ----------->HVH21     ----------------->AGL1 ----->ALFIN1       ---------->DOF2 <---------ATHB12--------->AGP1<---------ARR11(3) ---------->DOF2 --ZAT14--------->At4g35610 --------->TOE1(2)--------->SPL7  <---------ANAC46   <-----------------AG   tgtcgccatgagccgcctctgagaaagaaaactgcgaaatcatctcggccgacagatcttgcgacggagatcagatggtaatgcccataaaggaatcgtt  16680600                                                                                                <----                       --------------->AtSPL3                                                   -----             ------>NtERF2                                                          --------->YAB1            --------->DEAR3(1)                                                      <---------ICU4            <---------DEAR3(1)                                                     <---------YAB1           --------->ATERF1(1) <-------MYC3                                     --------->AHL20(1)      --------->DAG2   <---------------AtSPL8                                   <---------AHL20(1)     ---------->DOF2<---------HSFB2a(2)         xxxxxxxxxxxxxxxx>smallRNA(i)    --------->AHL20(2)  --------->ANAC46  --------->HSFB2a(2)       ------------>CBF                  <---------AHL20(2) ------DOF5.7(2) <---------MYB52(1)<-----------GT1                       <---------ZAT6   --------->TOE2(3) --->DOF5.7(2)<------NtERF2<-------TEIL <----------DOF2                <---------ANAC46<-----------GT1 ->YAB1   <---------ATERF1(1)  ------->MYC3  <-----------GT1 XXXXXXXXXXXXXXXXXXXX>MIR869.1--------->TOE1(3)   atcgacgtaaagcgacgccgttttggaagtacacgttttactctttatttcaatttgttttttggttcaactctcgtgttattttattattaccttaatt  16680700            <----------DOF2                     ----------------->AG         <-----------GT1                        <-----------------AGL1        <---------ZAT14          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <xxxxxxxxxxxxxxxxx        --------->ZAT14     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 ------->TEIL  -------->P<---------DAG2<---------YAB1    <---------DAG2                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <-----------GT1          <-----------GT1   <----------DOF2          <----------DOF2 -----AHL20(2)          --------->YAB1------->GAMYB  --------->ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---->AHL20(2)    <---------At4g35610--------->MYB46(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   aatctaccagtttacttttcatctaattatactaaatcaacagtcacttttcccaaaactgcaagtctctccttttgccatgtatgcttaagtctaaaat  16680800                                                                               <---------ATHB12                                                                         --------->ANAC58                                                                         --------->ANAC55(2)                                                                         --------->ANAC46                                                                         <---------ANAC55(2)                                                                         --------->ANAC55(1)                                                                         --------->ANAC58                                           <---------YAB1            ------>ZmHOX2a(1)                                          <---------AHL20(1)     <---------ARR11(3)                                          <---------AHL20(2)    --------->GLK1(1)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-----------HVH21                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->TOE2(3)                          <---------At5g28300 <-----------GT1   <---------GLK1(1)          xxxxxxxxxx                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ARR11(3)       <---------HSFB2a(2)             ----------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->TOE1(3)   --------->HSFB2a(2)             --------->YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ARR11(3) --------->YAB1---            <-------TEIL <-----------GT1<---------YAB1         <---------ARR11(3)   --------->TOE2(3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxx>smallRNA(i)--------->WOX13(1)--    <----------DOF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------YAB1  --------->WOX13(1) ----- xxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  -----   tttggtctttcacattcgtaaaacaattcactgccttctactattatttttcaatcgcacttgatgatatccttcacgtaaatcaatcttagagaagaca  16680900                         ------>ZmHOX2a(2)                         ===================HOX2a_HOX2a                        ====================HOX2a_HOX2a                        <------ZmHOX2a(2)                       <---------AGP1                       --------->AGP1                                                           -----                       <---------ARR14(2)                                            <---------ICU4 --------->ARR14(2)    --------->ARR14(2)                                            --------->YAB1 <---------ARR14(2)    <---------ARR11(3)                                         --------->YAB1----- xxxxxxxxxxxxx>smallRNA(se3)    --------->YAB1       <----------DOF2           <xxxxxxxxxxxxxxxxxxxxx ------>MYB46(3)       --------->ARR11(3)         ------>MYB46(1)             --------->LBD16  <xxxxx ----->GAMYB          <---------CCA1(2)           ------>MYB83               --------->HSFB2a(2)<---- ---->MYB52(1)       ----------->ARR10<---------ARR14(2)                     <---------HSFB2a(2)----- ------>RAV1(1)    <---------MYB52(1)<------ZmHOX2a(1)                   <---------GLK1(1)    -------   acagaccctcccagttcatccattagatcttcaataagaggaattggaaacctatctttcacagtcattccattgagttcccgataatcaacacataaac  16681000  Previous    Next  AGI:  At3g45443.1    Description:  unknown protein Range:  from: 16678962    to: 16680546    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g45446.1    Description:  transposable element gene. gypsy-like retrotransposon family, has a 8.8e-37 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor) Range:  from: 16680831    to: 16682916    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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