Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->AHL20(2)                                          --------->AHL20(2)                                     ----------->RAV1(1)                                     ------>NtERF2                                     <---------RAP2.6(3)      --------->AHL20(2)             <---------DDF1      <---------AHL20(2)            <---------ETT(1)     <---------ATHB12               --------->RAP2.3(3) ------->GAMYB                      --------->DEAR3(1) ------>P                           ----------->HVH21 ---->MYB46(1)                      --------->RAP2.3(2) ---->MYB83                         --------->DREB2C(2) --->MYB46(1)                       --------->RAP2.6(2)                                      <------- --->MYB83                         --------->DEAR3(2)                                       xxxxxxxxx ------ALFIN1             --------->AHL20(2)                             <-----------GT1  xxxxxxxxxxx -----MYB55(2)            <---------AHL20(2)                    --------->GLK1(1)      xxxxxxxxxxxxxx -----MYB59              --------->AHL20(2)<---------AHL20(2)   <---------GLK1(1)    <---------DEAR3(1) ---->MYB46(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->CCA1(2)     <---------ETT(1) --->ANAC46     <---------MYB59    --------->RAP2.3(1)  <---------ARR14(2)     >>>>>>>>>>AtTINY2 -ETT(1)    <---------ETT(1)      <---------At4g35610   --------->ARR14(2)     ----------->HVH21   caacccaattaattccgacccaattcatttaattcgagccgacatttaattccgacgagataggcgatttccgattaacttccgacatcggcgattttcg  16647100                                                                                   <---------ANAC46                                                                                   --------->ANAC55(2)                                                                                   <---------ANAC55(2)                                                                                   <---------ANAC58                                                                                   ==================                                                                                   ==================                                                                                   <---------ANAC58                                                                                   --------->O2                                                                                   <---------TGA1a                                                                             <---------ZAT18                                                                            <---------ANAC58                                                                            <---------ANAC46                                                                            <---------ANAC58                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                        <---------ZAT2                                                                        --------->ABI4(2)                                                                        <---------At4g35610                                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <---------GLK1(1)    --------->TGA1a                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       xxxxxxxxxxxxxxxx>smallRNA(s)     --------->At4g35610         <---------MYB52(1)          <---------At4g35610  <------NtERF2 --------->ZAT2       <---------ANAC46              --------->At4g35610--------->DEAR3(1) <xxxxxxxxxxxxxxxxsmallRNA(s)      <------NtERF2                  <---------ZAT2    --------->SPL7  --------->ALFIN1      --------->ATERF1(1)          <---------WRKY12   ------>NtERF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----GT1<-----------HVH21        <-----------HVH21   --------->LBD16  <---------MYB52(1)    <-------- xxxxxxx>smallRNA(s)            <------MYB46(1)      ------>NtERF2   --------->LBD16 xxxxxxxxxxxxxxxx xxxxx>smallRNA(s)       <----------DOF2           <---------LBD16 <---------LBD16 <---------O2 <---- xx>smallRNA(s)  <---------LBD16<------MYB83     <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   acattggctccgtcgagtctggggagcctttgctaggtcagctaatccaattctccggccgtcgatttctccggtgctgcgtgctacgtgagtcgatact  16647200                             ------>NtERF2                            <---------RAP2.6(2)--------->HSFB2a(1)                            <---------ANAC46   <---------HSFC1(2)                            <---------DEAR3(1) --------->HSFC1(2)                           <---------LBD16    ===============================HOX2a_HOX2a                        <---------At4g35610  <---------ARR14(2)                        --------->At4g35610  --------->ARR11(3)                    ====================================HOX2a_HOX2a                    ------>ZmHOX2a(2)        <---------ARR11(3)                  --------->ARR11(3) <---------HSFB2a(2)    ------>ZmHOX2a(2)  <-----------RAV1(1)   --------->ARR14(2)                      <---------------AtSPL8 =====================bZIP_DOF    --------->GLK1(2)                              <---------YAB1 =====================bZIP_DOF<---------At4g35610------>ZmHOX2a(1)             --------->YAB1 -ARR14(2) <----------DOF2 <---------At4g35610<------ZmHOX2a(2)               <---------YAB1 xxxxxxx>smallRNA(i2)<----------DOF2 --------->HSFB2a(2)                   --------->ICU4      <----- -------RAV1(1)   <---------ARR11(3)<---------LBD16 <----------DOF2   ------>ZmHOX2a(1)  <---------ZAT14   gttggatcgaattctttatcgatctttgctgcggctaatctggaaacgatccttctttagttcttccatctcctgtaagtattatagttagtacaatgta  16647300                                                                                               ------                                                                                             <-------                                                                                           <---------ARR11(3)                                                                                           --------->AHL20(1)                                                                                           <---------AHL20(2)                                                                                           --------->AHL20(2)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                      --------->At4g35610                                <---------MYB46(3)<---------AHL20(1)                   --------->At4g35610                                <---------ANAC46     --------->ARR11(3) ----AHL20(2)      <---------At4g35610                          <-------TEIL   <---------At4g35610   attgaattgaatcaatgtgtaagcagcatcaaaccatggacgacctgaaattgaatcagacactgatacatctcgtggttcaactggtactaatatattg  16647400                                           --------->REM1(1)                                           <---------ALFIN1                                          ------>MYB46(1)                                          ------>MYB83                                      ------->TEIL                               --------->HSFB2a(2)                               <---------HSFB2a(2)                              ------>ZmHOX2a(2)                            <-----------ARR10                            <---------ARR11(3)                            --------->ARR14(2)                            <---------AGP1-------->P             <------NtERF2  <---------ARR14(2)                                     <---------ZAT14           <---------DEAR3(1)<------ZmHOX2a(2)                                    --------->ALFIN1          <------ZmHOX2a(1) --------->ARR11(3)             ----------->GT1     --------->ATHB12   <-----------TBP          --------->GLK1(2)            *TSS         --------->At4g35610 <---------YAB1            <------ZmHOX2a(1)  <----------DOF2         <---------At4g35610 ----->GT1===========================HOX2a_HOX2a         <---------ANAC46     <---------YAB1     ---- -----CBF ==========================HOX2a_HOX2a --------->WRKY45    --------->ANAC46    ----------->GT1   tttatatttgtaggaggcgatgaagaagaggatctagacgaacctacactttgactatggagggtaatatacagcagaccatgagtggagttgcaaaaat  16647500                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                   --------->CCA1(2)                                                                  <---------ARR11(3)                                                                  --------->AGP1                                                                  <---------ARR14(2)                                                                  --------->ARR11(3)             <---------ZAT6                                       --------->ARR14(2)         --------->ZAT14                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------ZAT14                               <---------AHL20(2)     --------->ANAC46                                 --------->AHL20(2)   <-----------GT1                                  --------->ARR14(2)                    -----------  --------->ARR14(2)                                <---------ARR14(2)       --------->ATHB12    ----  <---------ARR14(2)         <----------DOF2      --------->LBD16 <---------AGP1          <---------MYB46(3) ----->AHL20(2)            <---------YAB1       <---------LBD16 ----------->ARR10        --------->ALFIN1   tcaatatacggtatagtgtttaagacatcatctttggagagaataacatatgcggatttaatagataagatctgtagaaagattgctctaggtggtgaga  16647600                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->ATHB12                           >>>>>>>>>RAP2.2                                           <-----------TGA1                         <---------ARR11(3)                                          <-----------HVH21                         --------->ARR11(3)                                         --------->ANAC46                        <---------RVE1(1)                                          <---------TOE2(3)                        --------->CCA1(1)                                    <---------AHL20(2)                        --------->RVE1(1)                                   <---------AHL20(1)                        <---------CCA1(1)                            --------->ALFIN1--------->TOE2(3)    --------->At4g35610 <---------GLK1(1)                        <------ZmHOX2a(1)<-----------GT1   --------->GLK1(2)    --------->GLK1(1)                      <---------TOE2(3)  <---------DOF5.7(2)  <---------GLK1(2)    <---------ARR11(3)                     --------->YAB1<---------ARR11(3) >GT1                  --------->ARR11(3)                    --------->ICU4 --------->AHL20(1) ------>DOF2  ----------->GT1---------->DOF2             --------->ARR11(3) --------->ARR11(3) ------   aaaggaatctgaaattgagttacaagatatctaaagcatggagagagtcttatattgtagataatgaggatgtgttgatatatttaacgtcattggataa  16647700                                                    -------->HAHB4                                                    <---------ICU4                                                    --------->YAB1                                                   <---------YAB1                                                   --------->ICU4                            --------                          <---------ZAT6         --------->YAB1                              <-------                      --------->REM1(2)       --------->ANAC58                               --------                   <---------ANAC58           ----------->GT1                              <---------ANAC58                   <---------ANAC46           --------->ANAC58                             <---------ANAC46                   <---------ANAC58         ---------->DOF2                          <-------TEIL ---->DOF2         <---------AtLEC2  --------->ATHB12           ----------------->AGL3     <---------ANAC58   agagggatttagacctgttttgcatgtagagttatgcagtgatttggaaagtaataatagccaagttccaatagtagagcgaagaagttcatgcggtgtg  16647800                                   --------->LBD16                                  <---------ANAC58                                  <---------ANAC46                                  <---------ANAC58                        --------->ATHB12               ------>NtERF2 <---------MYB46(3)        <---------YAB1     -------->ATHB1          ---            --------->At4g35610  <---------LBD16   <---------GLK1(1)      --------->ATHB51    <------   <---------LBD16           --------->ATHB12      --------->GLK1(1)     <---------YAB1      <------- ->ALFIN1   <---------ANAC58<---------YAB1 <---------ARR14(2)    <---------ATHB12            <------- --ANAC46   <---------ANAC58--------->ICU4 --------->ARR14(2) --------->ICU4                 <------- --->GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <------ZmHOX2a(1)  ------->TEIL       <------ZmHOX2a(1)   aattttggggaattggctgccaatgttgtaatggttgcggatgcaaatacaggaattctgagtactaatgaacctattattgaactagaggaacagcgtg  16647900                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                            ---------                                                                                     --------->GLK1(2)                                                                                    <---------GLK1(2)                                                                         ----------->GT1    <--------                                                                      --------->ALFIN1     --------->ICU4                                                                    --------->ALFIN1<---------ARR14(2)        <---------ZAT18                                <---------At4g35610          --------->ARR11(3)   <---------MYB52(1)                                  --------->At4g35610          --------->ARR14(2)  <-------GAMYB --------->YAB1                       --------->MYB46(3)  <---------ANAC46--------->YAB1 --------->AtMYB77<---------YAB1             <---------YAB1       <---------ANAC58----------->ARR10 -----HVH21    <---------ATHB12              <---------MYB52(1)   <---------ANAC58<---------YAB1    < --ANAC46   --------->TOE1(2)        --------->HSFB2a(2)    <---------YAB1<-------GAMYB <---------YAB1 --ANAC58   --------->TOE2(2)        <---------HSFB2a(2)  <---------At4g35610 <---------TOE2(3)------ --ANAC58 ------->TEIL            --------->GLK1(2)xxxxxxxxxxxxxxxx>smallRNA(s) --------->YAB1<------   agacagttagtgaacctatgatgctagagaatggagtttctgaaactgttattgaaccgctgatgatagagtgtggggttaatgaagattctgataatga  16648000  Previous    Next  AGI:  At3g45340.1    Description:  transposable element gene. Mutator-like transposase family, has a 3.3e-47 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 16647457    to: 16649820    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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