Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->YAB1                                                                --------->ARR11(3)      ---------->DOF2                                                                  <---------ARR11(1) --------->DAG2           <---------HSFB2a(2)                                         <---------CCA1(2) --------->DOF2           --------->HSFB2a(2)          --------->At4g35610         <------ZmHOX2a(2) ----->YAB1             --------->At4g35610            <---------At4g35610        <---------ARR11(3) ---->RAV1(1)        <---------HSFC1(2)         ---------->DOF2                   --------->ARR11(3) >MYB46(3)           --------->HSFC1(2)  ----------->GT1                      ---------->DOF2     ---   aataaagtcaaagataaactccaagcttctgcaaaacagggtaatgtaacaaaagtcagcaaacaagaattgatacacattaaagatcaaatctttcgaa  16584300                                <<<<<<<<<GATA-1                                <<<<<<<<<GATA-2                                <<<<<<<<<GATA-3                                          --------->ICU4          <----------DOF2       <<<<<<<<<GATA-4                                        <---------At4g35610  <----------ID1              --------->WOX13(1)                             --------->TOE2(3)  ----------->GT1        <---------YAB1                                     ----------->GT1 ------->DOF2 --------->ANAC55(2)                     <---------CCA1(2)     --------->YAB1   gaaagggataaactttacataatccatatgatcaatccacatagaaatcaacatttgtatccaaaaccctcacaaaaatcgtaaatttgaactgatgaag  16584400                                  ------->GAMYB                                --------->RAP2.6(3)                --------->ANAC58                              <---------ATHB12           ---------->DOF2                          ----------------->AG           <---------AHL20(2)                          ----------------->AGL2         --------->AHL20(2)                     -----                         --------->ANAC58               <---------ATHB12           ----------->GT1                <----------DOF2--------->MYB52(1)       --------->AHL20(2)  --------->ZAT6      -----    ---------->DOF2      --------->ANAC58 <---------ANAC46         --------->ANAC58--------->ANAC46   aacatcaaaagacgaagactttaagaaacccaataacggcaatttcgagtaaaccccaataaatcacaaacccaattgactctagacgtaaaaaaaaacc  16584500                                                 -------->P                                                 ------>MYB46(1)                                                 ------>MYB83                               ---------                                                --------->MYB55(1)                          <--------                   ------->MYC3    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     ---------        <---------ARR11(3)  --------->CCA1(2)  --------->MYB46(3)                       --------->YAB1 ---->TOE2(3)      <-------MYC3<---------------AtSPL8     --------->GLK1(1)            ----------->GT1 ---->TOE1(3)--------->ANAC46 --------->ICU4<-----------GT1                       --------->YAB1   ctaatttcaatatccatggcacatgagaagaaatgagtaccacgattcaccaactggaagaaatctaacaaaaactcatatgaataagaatgaaaatctc  16584600                                                                          <---------STY1(1)                                                                       --------->ANAC58                                                                    ----------->HVH21                                                                    <---------SPL7            <------                                                             --------->ARR11(1)               <------                                                             --------->ARR14(2)               <------                                                             <---------ARR14(2)           <---------ANAC58                                                             <---------GLK1(2)            <---------ANAC58                                                        =========================================bZIP_DOF                                                        ---------->DOF2--------->ANAC58   <---------ANAC46                                                 ----------->GT1    --------->LBD16      --------->ALFIN1    <---------AHL20(2)                           <----------ID1    --------->DEAR3(1)   <-----------HVH21   --------->AHL20(2)                        ---------->DOF2<------ZmHOX2a(1)          <---------TGA1a >GLK1(2)                             ------------------------>ANAC81 --------->SPL7   --------->TGA1a -ARR11(3)                       ------------------------>ANAC81  <---------LBD16      --------->O2 >ARR11(3)                     ---------->DOF2 ----------->GT1--------->ARR14(1)       <---------O2   acatataaaattgaatttgattcgaaatgaagcaaaaggaaatgaagaaaagagaaaaaaaaggattcgccggacgctagggctcagagacgtcgtgcgt  16584700                                                                                          <-------GAMYB                                               *TSS       ---------->ID1                  -----------                                           --------->ANAC58                              ----------->GT1 ---ANAC46                           <---------LBD16    <-----------RAV1(1)        ---------->DOF2 ---ANAC58                  <----------DOF2--------->ANAC58                       --------->AHL20(2) ---ANAC58               *TSS     <------------CBF  <---------YAB1           --------->AHL20(2) -----   gagaactgagaaatgtggaatttgtagtttcttttctattggggaaggcaacttatttttgttgttttctaatgaccaaaaaaataaaagacagttaaaa  16584800                                                                                                    <                                                                                                  ---                                                                                                  ---                                                                        <---------HSFB2a(2)       <--                                                                        --------->HSFB2a(2)   <------                    <---------MYB52(2)                   --------->ARR11(3)                   -------                    --------->MYB46(3)                   <---------ARR11(3)    <---------AHL20(2)----          --------->YAB1<---------ICU4                   --------->AHL20(1)    --------->AHL20(2)<---         --------->ICU4 --------->YAB1                   <---------AHL20(1)   <---------AHL20(2) ----         <---------ATHB12                               <---------AHL20(2)    --------->AHL20(2) <---       --------->WOX13(1)       --------->At4g35610 ------>ZmHOX2a(1)   <---------HSFC1(1)    ------- >GT1------------>CBF------->GAMYB           --------->MYB52(2) <-----------HVH21        ----------->GT1 ----->DOF2 <---------YAB1      <---------At4g35610--------->TOE2(3)    --------->HSFC1(1)    <------   aagaagtatcaattatcaaacaacaaacatcaccagctaatgtgagttcgtttcctaaatattttctgtcatttctagaatttaattcaaatggaataaa  16584900        <---------ANAC58        <---------ANAC58      <-----------GT1   <---------YAB1  <---------AHL20(2) ---------YAB1 ------>YAB1                              ------>ZmHOX2a(2) ----->ATHB1                      <---------AHL20(2) -------ICU4                     --------->AHL20(2) ---AHL20(1)                     <---------AHL20(2)     --------->YAB1 -->AHL20(1)                     <---------AHL20(1)    <---------YAB1                          ------ ----->AHL20(2)                 --------->AHL20(2)  --------->AHL20(2)                        ------- ------ATHB51             --------->At4g35610       <---------AHL20(2)                        <------ ----->ICU4       <----------DOF2--------->AHL20(1) --------->AHL20(1)                        <------ ------AHL20(2)   --------->TOE2(3)      <---------GLK1(1)     <-----------HVH21        --------->DAG2 -->AHL20(2)      --------------->AGL15 --------->ARR11(3)<---------YAB1              ---------->DOF2 ---AHL20(2)  <---------CCA1(2) <---------AHL20(2) --------->AHL20(2)       <-----------GT1 <--------P   ttattattttacttgtttatctttaatgagctaaattaatttgatctctgcaattttattatcaatgtcatttctgaataactatttcaaaagggtaagg  16585000    --------->YAB1                                                                               ----   <---------YAB1                                                                                <--- ----->GT1                                             ---------->DOF2                           ---- -->DAG2  --------->YAB1                   <---------AHL20(2)                                    <--- ---TOE1(3)       <---------HSFB2a(2) --------->ARR11(3)                                 --------->YAB1 ---TOE2(3)       --------->HSFB2a(2) <---------ARR11(3)                      --------->YAB1  -------   ttattttcataaacatatttccaaaacaatagtataagatgatatttattccaaactaaaagtatcgatttagaaccgaatcaaaaccgaataaaaattc  16585100             --------->ARR14(2)             <---------ARR14(2)             ------->TEIL                                                  <---------GLK1(2)             <---------ARR11(3)                                     --------->AHL20(2) --------->ARR14(2)                                                 --------->AHL20(1) ----->HSFC1(1)                                                     <---------AHL20(1) ------HSFB2a(2)                                                   <---------AHL20(2) ----->HSFB2a(2)--------->TOE2(3)                              --------->AHL20(2)     --------->CCA1(1) ------HSFC1(1) <----------DOF2       --------->TOE2(3)        <---------AHL20(2)     --------->RVE1(1) -->GLK1(2) <---------CCA1(2) ----------->GT1             <---------AHL20(2)  <---------ANAC55(2)   tagaatactctagtgtatctttaacttgagaactgaaaaaacttaaaaccaagtcgctgttaaatttaaatattttagatacttaaaaatatccaaaata  16585200  Previous    Next  AGI:  At3g45240.1    Description:  GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1); kinase. similar to GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G60550.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21831.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 16581463    to: 16584725    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g45242.1    Description:  CPuORF61 (Conserved peptide upstream open reading frame 61). similar to CPuORF62 (Conserved peptide upstream open reading frame 62) [Arabidopsis thaliana] (TAIR:AT5G60548.1) Range:  from: 16581463    to: 16584747    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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