Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               ------->GAMYB                                    <---------AHL20(2)                                    --------->MYB52(1)                        <---------AHL20(1)               <----------DOF2        <---------MYB52(1)---                        <---------ARR11(3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------      <---------ANAC55(1)        <---------AHL20(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------>MYB46(1)      --------->ANAC55(2)        --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)------>MYB83      <---------ANAC55(2)        --------->AHL20(2)<---------ARR14(2)         <---------MYB46(3)-----     xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ARR14(2)<---------MYB52(1) <---------MYB46(2)    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------MYB59   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      --------->YAB1          ------>ZmHOX2a(1) -------->P<----   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->WOX13(1)         <----------DOF2<---------MYB52(2)   acatagttaagtgtcaatacatacaatatatgtgatatattatctatcatacatatatgctttggttatcctttggttatcggttactaacctaaccgaa  16579600                                                                                             <-------GAMYB                                                                                            <------MYB83                                                                                            ---------                                                                                            <------MYB46(1)                                                                                           --------->MYB59                                                                                           <xxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <------MYB83                                                                                       <------MYB46(1)        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   <---------DEAR3(2)        <---------GLK1(2)                                                             xxxxxxxxxxxxxxx      --------->LBD16                                                                 --------->MYB59    <---------LBD16                                                                 <---------MYB52(1)  --------->ARR14(2)                                                              <---------DEAR3(2)  <---------ARR14(2)             ----------->GT1                          <-----------GT1<---------MYB52(1) -------------->AGL1     <-----------GT1                        ------>MYB83      <------MYB46(1) ->ANAC46--------->GLK1(2)    <---------ZAT2                    ------>MYB46(1)   <------MYB83<------ ---->ARR14(2)           --------->ARR11(3)                   <---------MYB59    --------->MYB59 -----ARR14(2)      --------->AHL20(2)   <---------AHL20(2)  --------->DEAR3(2)<---------MYB52(1)   accgaaaccggaatctaagacatataatatccagccggtttattttaagctatccaaactcgaaccgaactatgtttttcggttcggttcggttcggtta  16579700                                                                                             ------->MYC3                                                                                             <-------MYC3                                                                                             ------->PIF4                                                                                             <-------PIF4                                                                                             <-------MYC2                                                                                             <-------MYC4                                                                                             ------->MYC2                                                                                             ------->MYC4                                                                                           ----------                                                                                          <---------ALFIN1                                                                                   ----------->HVH21                                                                                  ------->MYC3-------                                                                                  <-------MYC3-------                                                                                 --------->ANAC46                                                                                 --------->ANAC55(2)                                                      ---------->DOF2            <---------ANAC55(2)                                                      =====================================bZIP_DOF                                                --------->At5g28300              --------->O2------->PIF5                                               --------->LBD16                   --------->TGA1a                                               ----------->GT1           --------->At4g35610---------                                              <---------DEAR3(1)         <---------ZAT2   <----------     <---------At4g35610                      --------->ATERF1(2)        <---------At4g35610<--------  <---------MYB52(1)                          <---------ANAC46         <---------WRKY12--------->MYB46(3) <-----------HVH21                            <---------ATERF1(2)    <-----------HVH21------->TEIL -->GT1                                      <---------LBD16  <---------ANAC58   <---------O2<-------PIF5 xxxxxxxxxxxsmallRNA(le3)                  --------->ALFIN1   <---------ANAC58   <---------ANAC46   - xxxxx>smallRNA(i)                     <---------ANAC58       <---------ANAC46   ==================== xxxxxxxxx>smallRNA(si3)               <---------ANAC58     <---------At5g28300  <---------TGA1a  <-- xxxxxxxxx>smallRNA(si3)               <---------ANAC46   --------->ARR11(3)  <---------REM1(2)  <--- ---MYB52(1)                      --------->ATHB12    ===============================================   atcggttagcggtttttttcccaggcctagcccaaaccattgcgagtgccggtgaataaagataccgtgaaggtcagctcttcacgtgaaccgcacgtgc  16579800     --------->ANAC58     --------->ANAC46     --------->ANAC58   <-----------GT1 -->OsbHLH66 -->ALFIN1                                <----------DOF2                 ----------->RAV1(2) ---->HVH21                         <---------ARR14(2)                    --------->ZAT2            = >TGA1a                             <---------ARR11(3)                   -------->P                 < --OsbHLH66                         --------->ARR14(2)                   ------>MYB83              <- -TGA1a                             --------->ARR11(3)                   ------>MYB46(1)         ---- -------->ARR14(2)                 --------->GLK1(1)                   --------->AtMYB61         <--- =bZIP_bZIP                       ----------->ARR10           <---------AHL20(2)    <------ZmHOX2a(2) -------DEAR3(2)               --------->ANAC46               --------->AHL20(2)   <---------ARR11(3) ------ANAC46           <-----------GT1 ------>ZmHOX2a(1)    --------->AHL20(2)    --------->ARR11(3) =bZIP_DOF    <-------TEIL   --------->ANAC46      --------->ARR14(2) --------->MYB46(3)        <----   cggtttcacgctacggttcacattttttactacgcgaaaatcctctttctccatattttcaaatttaaaaaaaccaacctggcaagatcaagtgtttcgc  16579900                            <-----------HVH21                 --------->ANAC46                         ======================================bZIP_DOF                         --------->TGA1a                      --------->RAP2.6(2)                         <---------TGA1a                   --------->ARR14(2)----------->GT1                         --------->O2                      <---------ARR14(2)--------->YAB1                         <---------O2                   <---------ANAC58     ------>ZmHOX2a(2)                         <---------ANAC58               <---------ANAC58    <------ZmHOX2a(2)                         <---------ANAC46           <---------DAG2 <---------ARR14(2)                         <---------ANAC58           <----------DOF2--------->ARR14(2) ==================================bZIP_DOF     <---------ZAT18    --------->GLK1(2)        <-------- ----------DOF2          --------->ANAC55(2)    <---------ZAT14--------->LBD16              --------- --------DAG2            <---------ANAC55(2)  <---------SPL7 --------->RAP2.3(1)          --------->TOE2(3) --->TEIL               <---------TOE1(2)   --------------->AtSPL8 <-----------ARR10    <-------TEIL ------TOE1(2)         ------>ZmHOX2a(1)    --------------->AtSPL3--------->GLK1(1)--------->AHL20(2) -----ALFIN1          --------->TOE2(2)     <---------------AtSPL8<---------CCA1(2)--------->YAB1   acctttctctatttccatacgtttcctacgtgtcacaatctcattagtcgtacacttttcgtagccgcaaatctagcgatcgtaataatattcattaatt  16580000                                      --------->GLK1(1)                                      <---------GLK1(1)                                      <------ZmHOX2a(2)                                     <-----------ARR10                                     <---------ARR11(3)                                     --------->ARR11(3)                                     --------->AGP1                                     <---------AGP1                                     <---------ARR14(2)                                     --------->ARR14(2)                              ------>ZmHOX2a(2)                                    *TSS                                            <------ZmHOX2a(2)                           ------>MYB46(1)                                          <---------GLK1(1)                   ------>ZmHOX2a(1)<---------CCA1(2)                              <---------AGP1                   ==========================HOX2a_HOX2a     --------->YAB1        --------->ARR11(3) -AHL20(2)         ===========================HOX2a_HOX2a    <---------ICU4        <---------ARR11(3) >AHL20(2)<----------DOF2  ------>MYB83------>ZmHOX2a(2)  --------->YAB1       ---------->DOF2   ctctcttcttctctttcactcctaaaaccaacttctccagatctctcttcttctacttactcatcatcacaacttctcagagaaagatctcagaaaaaaa  16580100                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                           ----------                                                                                          <----------                                                                                          <----------                                                                                         --------->bZIP60(2)                                                                                         --------->ANAC46                                                                                        <------NtERF2                                                                                       ------>NtERF2-                                                                                       <---------ATERF1(1)                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                 --------->YAB1                                 <---------ALFIN1 <---                                <---------YAB1                                 ======================                        <-----------RAV1(1)                                    ------>ZmHOX2a(1)-----                       <---------YAB1                           --------->ARR11(3)   --------->ZAT2<-                     --------->ATHB12                           <---------ARR11(3) --------->DEAR3(1)                     --------->ATHB51                         ----------->ARR10======================                     <---------ICU4                       --------->LBD16  --------->ARR14(2) <------                    --------->ICU4          --------------->AtSPL3   <-----------GT1<---------ATERF1(1)        ------->TEIL<---------YAB1 <---------YAB1       <---------LBD16    <---------ARR14(2) <------   cttgaaaatgaagctcgaattcattattgttgctatgatgctaagtctcgtactcgtctccggtgagattttaactaaatcctcaccggctccgtcaccg  16580200       <---------GLK1(2)       --------->ARR14(2) ------>ARR14(2) ------>ARR11(3) -------ARR11(1) -------ARR14(2) ---------ARR10 -------ARR11(3) ------>AGP1 -------AGP1                                          <---------ICU4 ------ARR14(1)                                      <---------YAB1 ->HVH21--------->ARR14(1)                       ------>ZmHOX2a(2) -HVH21<---------ARR14(2)                       --------->GLK1(1) -TGA1 --------->ARR11(1)                       <---------GLK1(1) ----->ZmHOX2a(2)                 --------->AtMYB61  --------->ICU4          --------->AHL20(2) ------CCA1(2)                   --------->MYB46(3)--------->YAB1   --------->ARR14(2) ======HOX2a_HOX2a             <---------ALFIN1<---------AGP1  <---------LBD16 ---->LBD16            --------->ANAC58        --------->ARR14(2)  --------->ARR14(2)              -- -----ZmHOX2a(2)       --------->ANAC58        <---------ARR14(2)  <---------GLK1(2)           ------ =====HOX2a_HOX2a      --------->ANAC46       <---------CCA1(2)<---------At4g35610            <------ ---LBD16<-------TEIL <---------LBD16      <---------LBD16     --------->At4g35610            ------- ---At4g35610 <----------DOF2 --------->MYB46(3)<------ZmHOX2a(2)  <---------ARR14(2)       ------>ZmHOX2a(1)   gatctagcagattcgcctttaatccacgcatcaccaccatcgaaactcggatctcataattctccagcggaatctccaattgaatactcttctcctccag  16580300                                    --------->ARR14(2)          <---------ZAT14           <---------ARR14(2)          <---------ZAT18      --------->LBD16                       <---------GLK1(2) --------->RAV1(2)             ------>NtERF2             --------->AtMYB61                    <------ --->LBD16--------->ZAT14     <---------DEAR3(1)         <---------ICU4                     <-------- ---HSFB2a(2)                <---------LBD16          --------->ANAC46            ------>ZmHOX2a(1) -->HSFB2a(2)            ------>ZmHOX2a(1)      --------->ARR14(2) <---------ATHB12  ----------------   agcctgaaacagaacactctccatctccttctccggcgaattctccatcggtttctccaccattaccgaatgattctcaatctccttcttcgtctgcttc  16580400                                                                                 <---------AtMYB61<--                                                                                 --------->ALFIN1----                                                                              <---------DEAR3(1) ----                --------->At4g35610                                           --------->ALFIN1  <----                <---------At4g35610                                      <------NtERF2         <-----               --------->ANAC58                                         <---------HSFB2a(2)    <-----               --------->ANAC58                                         --------->HSFB2a(2)   <------          <---------LBD16                                             <---------MYB52(1)      <------       ----------->HVH21                                              <------NtERF2          <-------      <-----------HVH21                                              <-----------HVH21       <-------      <-----------TGA1                                               ------>NtERF2<---------MYB46(3)     --------->ANAC46   <---------ANAC46                             <---------RAP2.6(3)    --------- ----DOF2 --------->At4g35610        --------->YAB1                  <---------SPL7   <------ZmHOX2a(1) -At4g35610  <---------MYB52(1) <---------At5g28300                 --------->ATERF1(2)     <-------- ----->WRI1 --------->LBD16    --------->YAB1      ------>ZmHOX2a(2)<---------ATERF1(2) <---------KAN4(2)   tccgtctccgtcaccggaagctagcgatgtgaatcacagtgatattactgggatcgaaggggagaagttgccgtcgggaagcggtggaggaatgagcggc  16580500  Previous    Next  AGI:  At3g45230.1    Description:  hydroxyproline-rich glycoprotein family protein Range:  from: 16580036    to: 16580812    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version