Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                      --------->YAB1                                                    --------->ATHB12            <---------TOE2(3)                                             <---------WRKY18(1)      --           <---------DOF5.7(2)                                           --------->WRKY38(1)     <---          --------->WRKY12                                               --------->WRKY12        <---          --------->WRKY45                         <--------P            --------->WRKY45     <------          --------->WRKY38(1)             <---------MYB52(1)      ------->TEIL   <-------TEIL <------       <---------ANAC46 <---------YAB1   <-------GAMYB ----------->HVH21 ----------->HVH21    <------ ---DOF2 --------->DOF5.7(2)  <---------YAB1   <------ZmHOX2a(1) <---------CCA1(2)     <---------YAB1   tgtttgattacgttgacgatgtaatcatatttgtcattgagcccgttgaggaggtaagtgaccagatgtatctcgttgaccggtgcatcaacattggcga  16514600        --------->ANAC58        --------->ANAC58     --------->At4g35610  <------ZmHOX2a(2) --------->ARR14(2) <---------ARR14(2)                                                    --------->AHL20(2) -------->At4g35610                                              --------->ANAC46 --------->ARR10                                                 --------->ANAC58 ------ZAT2                                                <---------YAB1 ------At4g35610                            <---------MYB46(3)   <---------ANAC55(2) ---ANAC46                                  --------->MYB52(2)   --------->ANAC58                   = ---ANAC58                                 <---------TOE1(2)     --------->ANAC55(2)                < ---ANAC58                                <---------MYB52(1)--------->ATHB12            ------>ZmHOX2a(2)   gcagatcagcaagcgatttgagtttttgacaataagcctgaatcgtttgttctccaatctcttgattacgcaattcattatctagttggatcgctcgagc  16514700                                                <---------ANAC58                                                <---------ANAC58                                              --------->ZAT18                                              <---------ZAT14                                              <-------TEIL                                              --------->ZAT14                                            ------->MYC4                                            <-------MYC3                                            <-------MYC2                                            ------->MYC2                                            <-------PIF5                                            <-------MYC4                                            ------->PIF5                                            ------->MYC3                                            <-------PIF4                                            ------->PIF4                                           --------->TGA1a                                           <---------TGA1a                                           <---------O2                                           --------->O2                                           <---------bZIP60(2)                                           --------->ANAC55(2)                                           <---------ANAC58                                           <---------ANAC46                                           <---------ANAC55(2)                                           <---------ANAC58                                          <-----------------------TaNAC69(2)           --------->LBD16                ------------>OsbHLH66          <---------ANAC58             <-----------TGA1                           <------ZmHOX2a(2)          <---------ANAC46             <-----------HVH21                          --------->CCA1(2)          <---------ANAC55(2)         --------->ANAC58                           <---------ARR14(2)          <---------ANAC58            --------->ANAC46                           --------->ARR14(2)          --------->ANAC55(2)         --------->TGA1a                            <---------AGP1         <---------LBD16              --------->ANAC58                           --------->ARR11(3)     <---------MYB46(3)               --------->O2                             ----------->ARR10     <---------REM1(1)           ------>ZmHOX2a(2)                      --------->At4g35610     <-----------RAV1(1)        <------ZmHOX2a(2)                  --------->ATHB12           -------  <-----------RAV1(1)          --------->ARR14(2)                 --------->ICU4 --------->AGP1 ===============================================bZIP_DOF         <---------WOX13(1)------>ZmHOX2a(2) ----------DOF2                <---------ARR14(2)     ------>NtERF2--------->YAB1<---------ARR11(3)   ctctttgttgttgcggaattagttttcgattcggatccaaacgtcacgtgcagtgcctccagtcttgaatgatgagcggaacagatctggagcaagagtt  16514800                                                                                                   <-                                          <---------HSFC1(2)                                      ---                                          <---------HSFB2a(1)                                     ---                                      --------->ANAC58                                           ----       --------->LBD16                --------->ANAC58                                <---------HSFC1(1)    <------ZmHOX2a(2)      <---------ANAC58     <---------MYB52(1)                    ------>ZmHOX2a(1)   --------->ARR11(3)      <---------ANAC58     --------->DOF5.7(2)                   --------->HSFC1(1)   <---------ARR14(2)      <---------ANAC46    --------->TOE2(3)                      <---------HSFB2a(2)   --------->AGP1       <---------MYB52(1)--------->HSFC1(2)       --------------->AtSPL8<<<<<<<ZML2   --------->ARR14(2)  <-----------HVH21  --------->MYB46(3)     --------->YAB1       --------->HSFB2a(2) -->GLK1(1)   <-----------GT1     <---------At4g35610  <---------ALFIN1             <---------ANAC46   ccatagatccagagtttaacgagtccgtcgcgtttcagccaagaaccatcgttatctccactgggaaacatagtaccatcaaggtgtcctagaacatcga  16514900                                            <---------YAB1                                          --------->YAB1                                       --------->ATHB51             <---------ANAC46          <---------ICU4           <---------ARR14(2)         --------->ICU4        <---------ANAC58        <---------ATHB12        <---------ANAC58       --------->ANAC58 <---------ICU4        <---------ANAC46       --------->ANAC58 --------->ATHB12  ----------->HVH21--------->DAG2     <---------YAB1 ----------HVH21  ---------->DOF2   --------->YAB1        --------->HSFB2a(2) ------>ANAC58--------->HSFB2a(2)  <---------YAB1       <------ZmHOX2a(2)         --------->YAB1  --- ------>ANAC58<---------HSFB2a(2)--------->YAB1<---------YAB1                  <----------DOF2------- ----->SPL7--------->ARR14(2)  --------->ANAC46--------->ICU4           <-----------RAV1(1)<---------   acgtcagacagcgtgtctggaaaagctctctccaagcatcataattgtgatcattgagatcgagaattaagagtatgtgggctttgatatttgtaacccc  16515000                                        <----------DOF2                                       *TSS                            <<<<<<<<<<<<<<<<<LFY                             <----------ID1                            >>>>>>>>>>>>>>>>>LFY           --------->CCA1(2) ----------->GT1  ------- ------->DOF2              --------->RAP2.3(3)        ---------->DOF2      ------------------------>ANAC81 >GAMYB                  --------->At4g35610     ----------->GT1       ---------->DOF2 ---------->DOF2 --GT1 <----------DOF2   <---------At4g35610    >>>>>>>>>TBF1  ---------->DOF2    ---------->DOF2   aaacgctcgctctatcgctggaagttgagcagccattggagacttttgaagaagaaaaaagagatgaaagaaggaaagaaggaaaaaaggaaagaagaaa  16515100                                                                         <-------GAMYB                                                                      --------->ARR14(2)                              --------->ZAT14                         --------->ARR11(3)                              --------->ZAT18                         <---------ARR11(3)                              <---------ZAT14                         <---------ARR14(2)                          --------->ALFIN1             <---------GLK1(1)<---------MYB46(3)                          <---------AtMYB61            --------->GLK1(1)------>ZmHOX2a(2)                    <------ZmHOX2a(1)              <---------TOE2(3) <------ZmHOX2a(1) --------->CCA1(2)<---------TOE2(3)       <---------YAB1    ===================HOX2a_HOX2a    ------- --->DOF2   --------->DAG2<---------DEAR3(1)---------->DOF2 ------>ZmHOX2a(1)   ----------->HVH21>>>>   gagaaatgagagaaaaggttaaggagcgatggtgctctgataccatgaaagttaatgaattcctcttgagaggatcgttgaattgacaaggctatataaa  16515200                                                                                                   --                                                                                                   <-                                                                                                 ----                                                                                               <-----                                                                                               ------                                                                                             <-------                                                               <-----------GT1        --------->YAB1     ----------->GT1                           --------->AHL20(1)     --------->HSFB2a(1)    -------- --->DOF2   --------->ANAC46             --------->ANAC46 <---------GLK1(2)          <---------ATHB12 >>>>>>>>>>>>>LFY                --------->YAB1<---------ARR11(3)     <---------HSFB2a(1)  ------->TEIL   gccaatgttgttacacaaaatcagggattaaaaaatcatatatacagaatatataaaacagattgtaacagaacgtccctatattctatcatggatgtgt  16515300      <---------AHL20(2)                                                          --------->SPL7     <---------AHL20(1)                                                           --------->RAP2.6(3)     <---------AHL20(2)                                                          --------->MYB52(1)     --------->AHL20(2)                                                 <---------O2                - --------->AHL20(2)                                    <---------AtLEC2 --------->TGA1a            -- <---------AHL20(2)                              ----------->RAV1(2)    ============================= ------->TOE2(3)                                 <---------ZAT2         <---------TGA1a <---------ALFIN1 ---------DOF2                                   --------->ZAT2         --------->O2<-----------TCP11(1) --->TEIL                                       --------->MYB52(1)      ============================= ----ZAT18                                      ------>MYB46(1)         <---------bZIP60(2)     ----- --->ZAT18                                   --------->ANAC46       <-----------HVH21   ----------->RAV1(1) --------AtSPL3                 ----------->GT1 ------>MYB83 =====================bZIP_DOF     ------ ------->AtSPL8                ----------->GT1<---------MYB59---------->DOF2------>NtERF2    --------   actttaattttttttagtagtaaatgaatgaaggtgttaaaaaaaaaacccaactgggcatggcaaagaatgtcacgaggcccaaacggcccacagaaag  16515400                                                  <---------At4g35610                                                  --------->At4g35610                       <------NtERF2                                                  <---------LBD16                          --------->ABI4(2)                                               ----------->HVH21                           <---------MYB46(3)                                             --------->ANAC58                              ------>NtERF2                                             --------->O2                         <---------ARR11(3)                                             --------->ANAC58                     --------->ARR11(3)                                             *TSS--------->MYB52(1)               <---------ARR14(2)                                          --------->WRKY18(1)                     --------->ARR14(2) ----------->GT1                       --------->LBD16                       <---------ANAC46 -------->DAG2                       <---------LBD16--------->LBD16         <---------AtMYB61 -------->DOF2                       ------>ZmHOX2a(2)             --------->ANAC58    <---------DEAR3(1) ===bZIP_DOF                        <------ZmHOX2a(2)              --------->ANAC46   ------>ZmHOX2a(1) ===bZIP_DOF             --------->ALFIN1<-----------HVH21         --------->ANAC58 ------>ZmHOX2a(2) ------>GT1    <-----------RAV1(2) --------->ARR14(2)      <---------At4g35610  <---------MYB46(3) --->DAG2  --------->WRKY12  <---------GLK1(1)<-----------HVH21  --------->MYB52(1)<------ZmHOX2a(2) -->DOF2   --------->WRKY38(1)     <---------ARR14(2) ----------->HVH21   <----------DOF2 <---------DEAR3(1)   gtaaagtaaaacgttggccagaaggaagtggagttcggatccgggtcaagtcaccggagacagcgactcacggcctctttggtggatcctcggtggctct  16515500  Previous    Next  AGI:  At3g45095.1    Description:  transposable element gene. copia-like retrotransposon family, has a 2.4e-140 P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element) Range:  from: 16510695    to: 16515039    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g45100.1    Description:  SETH2; transferase, transferring glycosyl groups. similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G73160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21493.1); similar to putative Phosphatidylinositol N-acetylglucosaminyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAC10070.1); contains InterPro domain PIGA, GPI anchor biosynthesis (InterPro:IPR013234); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) Range:  from: 16515445    to: 16518389    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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