Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->ARR11(3)                                 <---------ARR11(3)                               <---------ZAT6                            <--------P                    <---------DAG2                    <----------DOF2------>ZmHOX2a(2)                                               <-                  <---------At4g35610                                                              --          <---------ALFIN1 <---------MYB52(1)                            --------->ZAT6            --         --------->ANAC46<---------HSFB2a(2)      <---------ZAT18      <---------WRKY18(1)         --       --------->REM1(1) --------->HSFB2a(2)--------->TOE2(3)         --------->WRKY38(1)    --------    --------->TOE1(3)   <---------LBD16     --------->TOE1(3)         --------->WRKY12       <-------    --------->TOE2(3)   <---------ANAC46  --------->GLK1(2)      --------->PCF5           ------>ZmHOX2a(1)   agtataccttcaccacagggagcttttcgggtagtgatcttgagaaccttagtgggcattctcactggtcccttgactctaagtctcttgtccttagctc  16483000                                                                               --------->ARR11(3)                                                                      -------->ATHB1                                                                      --------->ATHB51                --------->ANAC58                                      <------------ATHB5                --------->ZAT6                                        <--------ATHB1             --------->ZAT18                                          <---------ICU4             --------->ZAT14                                          >>>>>>>>>>AGL22         <---------ICU4                                               --------->ATHB12        <---------ATHB12                                              >>>>>>>>>>AGL20      ------>MYB83                                                    >>>>>>>>>>AGL24      ------>MYB46(1)                                                 --------->YAB1  ------->TEIL  --------->ANAC58                                     <---------ATHB51 --------MYB52(2) --------->ANAC46                                   --------->ICU4 ------->ANAC58 --------->ANAC46                                     <---------ATHB12 ------->ANAC46--------->ZAT18           ------->GAMYB             <---------------AGL15 ------->ANAC58<---------ZAT18        ----------->RAV1(1)          --------------->AGL15     -------- ->At4g35610 <---------ZAT18        --------->At4g35610           <-----------------AGL3 --------->GLK1(1) --At4g35610 <---------ZAT14        <---------At4g35610<---------AHL20(2)      <---------ARR11(3)  --   cacgaaccaaatcagtgcacactacatatatcatttgcagcaacagagcaaaaacatttattcagtattcaataattggaacatctctcagatagcctca  16483100                             --------->ANAC58                             --------->ANAC58              --------->TOE2(3)           <<<<<<<ZML2              --------->TOE1(3)        --------->HSFB2a(2)              --------->TOE1(2)       --------->LBD16                    <-----------GT1       <---------TOE2(3) --------->ZAT18  <---------ARR11(3)   ---------->DOF2                  ----- ->TOE2(3)    --------->TOE2(2)  --------->GLK1(1)          <---------TOE2(3)           <-------TEIL ------->ARR14(2) --------->ZAT6 <---------GLK1(1)  ----------->GT1 ----------->GT1    --------->ARR11(3)   aaatactctaatgtaacctaagactagtgcaacgcatttccctagaacttagagaggtgattaagaaaagaagtaaaacctttctcaaggttcttgacat  16483200                                 --------->At4g35610                             --------->ARR14(2)                             <---------ARR14(2)                                               <------                             --------->GLK1(2)                                            <------NtERF2                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           ------>NtERF2                        ----------->GT1                         --------->LBD16 --------->ARR14(1)                    --------->ARR11(3)                          ------>ZmHOX2a(1)       <---------ETT(2)                    <---------ARR11(3)                     <----------DOF2  <---------WOX13(1)<------                  ------>ZmHOX2a(1)                       <---------DAG2    <--------P  --------->ETT(2)     ========================HOX2a_HOX2a                ------>MYB46(1)   <---------MYB46(3)  -------     <------ZmHOX2a(1)------>ZmHOX2a(2) --------->ALFIN1------>MYB83   --------------------->WRI1 ---->GLK1(2)  --------->ICU4------->TEIL          --------->ANAC46   --------->ATHB12<---------ATERF1(1)   tcttggaggagagagtaatcctgatcttgtgaatctgctcgagtggctcttccaaaccagcctttcctggtttcattggttgatacgctgtcgccatatt  16483300                                     <----------DOF2                                     <---------DAG2                                 --------->GLK1(1)                                --------->ARR14(2)                                <---------ARR14(2)                               <------NtERF2                            <---------LBD16                            <------NtERF2                           ------>NtERF2                           <---------RAP2.3(1)                          <---------DEAR3(1)                          <---------RAP2.3(2)                         --------->ATERF1(1)                        <---------ATERF1(1)                        --------->TOE2(2)                       <---------WRKY38(1)                         --------->TOE1(3)               <---------ZAT2 <---------MYB46(3)                   --------->TOE1(2)     --------->CCA1(2) ----------->HVH21                        <-----------GT1    <----------ID1     --------->ETT(2)                      --------->YAB1 ---ICU4 --------->MYB52(1)<---------ATERF1(1)               <---------ICU4 ---ARR14(2)   --------->ZAT2<---------ANAC46        <---------ZAT2--------->TOE2(3)      ----------- -->ARR14(2)  ------->TEIL<---------RAP2.3(3)        --------->At4g35610      *TSS --------->ANAC55(2)   tgcagagagacgaacgaagctcgagtcgacggcggatagctttttgcttcaagagagctcgaattataacctaagaagacgttttatgtaatataaaaac  16483400                          <---------MYB55(2)                          --------->MYB46(3)                          ------------>CBF                          <---------ATHB12                         --------->ANAC58                         ------>MYB83                         --------->ANAC58              <---------MYB46(3)             <----------DOF2               <---------ICU4                              --------->DAG2            <---------ANAC58     ---------->DOF2                                      ---------->DOF2    --------->AHL20(2)   -------->P   ------------>CBF<---------YAB1         --------->YAB1    <---------AHL20(2)   ------>MYB46(1)  <---------ATHB12       <---------MYB52(1) <---------HSFB2a(2) >TBP       <---------ANAC58  ----------->TBP     <---------At4g35610     <----------DOF2         <--   cctcatttatatgggcttgttgggcccaaccaatataaagcccaataactacagctatgtttgctctgtttgttttctttcatattccaaaagtgtttga  16483500                                                                               <---------MYB46(3)                                                                          <---------TOE2(3)                           <---------YAB1                                 <---------YAB1         ----------------->AGL1            <----------DOF2 <-------TEIL  <<<<<<<<<<<<<<<<<LFY   ----- -------ICU4<---------ARR14(2)           <---------At4g35610             <-----------GT1       <-----   taagtacttgggccaatatgggccttgttatttttagatgggctgctattttgttagcatgttcatctctgtatttaacattggtttgtcaaacagagga  16483600                                                                                              <------                                                                                          --------->WOX13(1)                                                                                      --------->ANAC46                                  <------ZmHOX2a(1)                                   --------->ANAC58                                  ============================HOX2a_HOX2a             --------->ANAC58                                <---------TOE2(2)                                   --------->ARR14(1)          <---------ANAC58    --------->TOE1(2)                                     --------->CCA1(2)          <---------ANAC58    --------->TOE2(2)                                    --------->ARR14(2)      <------MYB46(1)        --------->ANAC55(2)                                   <---------ARR14(2)      <------MYB83           <---------ANAC55(2)                                   --------->ARR11(1)      <---------MYB46(3) --------->YAB1                                           --------->CCA1(2)  --------->ATHB12       -------->HAHB4       --------->DAG2                     <---------------AtSPL3 ----->DOF2             <---------YAB1       ---------->DOF2           ---------->ID1<-------TEIL -ZmHOX2a(1)          --------->YAB1 ----------->GT1   <------ZmHOX2a(2)     ---------->DOF2<--------   aagaagattggttcttgcagagaataataatacgtaggaaggaaacaaaaagttgagatcaaaaaacacatttgtctcttaaagagatacggcaattaac  16483700                                    ------->TEIL             --------->MYB52(2)     <-------TEIL                                              <------ZmHOX2a(1)        <---------YAB1--------->ARR11(3)                                               --------->ANAC58  <------ZmHOX2a(1) ----------->ARR10                                                  --------->ANAC58 -----GT1----------->GT1  <----------DOF2   ----------->GT1      --------->ZAT6        --------->ANAC46 -MYB52(2) <--------P <---------ARR11(3)  ----------->GT1     --------->WRKY38(1)  <-----------GT1   aagaggaagtatggttagtagtaagatactttgttatgtacatgaagtgaaaaaacgtagaatgttgactctaggcttaactaatttacaagcagaggag  16483800                                              <---------At4g35610                                              <---------HSFC1(2)                                              --------->HSFB2a(1)                                              --------->At4g35610                                          --------->REM1(2)         ----------->HVH21                                        --------->LBD16        <---------MYB46(3)                                       <---------ANAC46        --------->MYB55(2)                                       <---------ANAC58        ------>NtERF2                                       --------->DEAR3(1)     --------->ALFIN1                                       <---------ANAC58       <---------DEAR3(1)                  <--                                      <-----------------------TaNAC69(2)                          >>>                                      <------NtERF2          <---------MYB52(1)              ------>MYB46(1)                                     ------>NtERF2          --------->LBD16 ------>NtERF2  <---------ALFIN1                                   --------->ZAT18         --------->LBD16  ----------->RAV1(1)------                                >>>>>>>>>MYB1 <---------HSFB2a(1)  <-----------HVH21       --------->AtMYB61                  ---------->DOF2<------------AtMYB77     <---------LBD16 --------->MYB46(3) ------>MYB83             ----------->GT1    >>>>>>>>>MYB2 --------->HSFC1(2)<------NtERF2          --------->MYB46(3)     <----------ID1            --------->MYB52(1)     --------->MYB46(3)--------->ANAC46--------->AtMYB61   tgagtagaagacaagaggtataaaggcattgtctaactgcgccgtgtaagcttccaacatcccggtggctgtcacagccaccagaagcgaccaccatcct  16483900  Previous    Next  AGI:  At3g45030.1    Description:  40S ribosomal protein S20 (RPS20A). Identical to 40S ribosomal protein S20-1 (RPS20C) [Arabidopsis Thaliana] (GB:P49200;GB:Q42168;GB:Q9FPI1;GB:Q9LDG8); similar to 40S ribosomal protein S20 (RPS20C) [Arabidopsis thaliana] (TAIR:AT5G62300.1); similar to 40S ribosomal protein S20 (RPS20C) [Arabidopsis thaliana] (TAIR:AT5G62300.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN62522.1); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848); contains InterPro domain Ribosomal protein S10, eukaryotic/archaeal; (InterPro:IPR005729) Range:  from: 16482371    to: 16483378    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g45040.1    Description:  phosphatidate cytidylyltransferase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO16781.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) Range:  from: 16483647    to: 16486738    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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