Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                      <-------MYC3                                                                                      ------->MYC3                                                                                     <---------ANAC46                                                                                     <---------ANAC55(2)                                                                                     --------->O2                                                                                     <---------O2                                                                                     <---------TGA1a                                       <---------AHL20(1)                            ----------->GT1                      <----------DOF2  <---------AHL20(2)                            --------->TGA1a-                  <---------GLK1(2)    --------->AHL20(2)                            --------->ANAC55(2)                 ------>MYB46(1)      --------->AHL20(2)                          <------ZmHOX2a(2)-- -------->DOF2   ------>MYB83       --------->TOE2(3)                            <-----------HVH21<-- ---->WRI1     <---------MYB59<----------DOF2                              <---------AHL20(2)  <-----   aaaaagagaaacttgaaccaaattctttatctcttttacattaaatttcaattttggtgtttcgatgttcgatgtttttaatggatcacgtgaaattgag  16480700                          --------->ZAT6                          <---------ICU4                       --------->YAB1                      <---------AHL20(2)                             --------->MYB52(2)                     <---------AHL20(1)                            <---------MYB52(1)                     --------->AHL20(1)                 --------->ANAC58 ----YAB1            --------->AHL20(2)                 ----------->GT1 -------->YAB1      --------->YAB1                ---------->DOF2<---------ANAC58                 <-- --------->GT1 <---------ATHB12                --------->CCA1(2) <---------ANAC58      <----------DOF2 -------WOX13(1)--------->AHL20(2)          ----------->GT1      <---------ANAC46  ------->GAMYB  --- ----TOE2(3) --------->WOX13(1)      ---------->DOF2    --------->ANAC58        <-----------GT1  ----   attgataaatcgttccaatcaaatataatcactacaaacaaaagtatggatataaagctcgtaatttgcgttagttttagtttaaccccctttgaaatga  16480800                                                                              --------->ANAC58                                                                              --------->ANAC58            <---------AHL20(2)                                          --------->ANAC46            --------->AHL20(2)                                       --------->KAN4(2)        --------->ICU4                <---------ALFIN1               <---------ARR14(2) -------HSFC1(2)               <---------ANAC46            --------->ANAC46 ---------->DOF2 ------>HSFC1(2)      --------->At4g35610      --------->ANAC46      --------->ARR14(2) --->TEIL<---------ICU4  <------ZmHOX2a(1)     --------->AtLEC2    <---------KAN4(2)              ---   agcttctctactaattaatctctcagaggaatttcgtcgaacaccttacatgcagcaattccagccaagaatatactcaaaagctactaaaatttcaaaa  16480900                                                                                --------->RVE1(1)                                                                               <---------ARR11(3)                                                   <---------GLK1(1)           --------->ARR11(3)                                                   --------->GLK1(1)           --------->GLK1(2)                              ---------->DOF2    <------ZmHOX2a(1)       --------->ANAC58         ----------->GT1  ---------->DOF2    <---------O2                --------->ANAC58       ----- ------>AHL20(2)       --------->ZAT6      --------->CCA1(2)           ---------->DOF2          -----   ttaaaactgaaatgagaaaacaataacacaaagaaagaagctaagacacgaggaaatcaacaattcgtagcacaaaagcaaaatctctgtctagataaca  16481000                                                   <-------GAMYB                                      --------->AHL20(2)                                      --------->AHL20(1)  <----------ID1               --------->ANAC46   <---------MYB46(3) ---->TOE2(2)                <-----------GT1   <----------DOF2                            <---------ATHB12 ---->TOE1(2)     ----------->GT1     <---------AHL20(2)                             <---------At4g35610   taagacaacaaatcgtagaagagaaaaaattttacgaaaattttttgaactttggttgaacttacaagttaagggggattgaacttgagctaatcaagaa  16481100                                                   ----------->HVH21                                         <------MYB46(1)                                      *TSS --------->ALFIN1                                     -----                                      <------ZmHOX2a(1)            <---------DEAR3(2)<---------ANAC46                                    <---------TOE1(3)              <------MYB46(1) <-----------HVH21<                                    <---------TOE2(3)              ----------->GT1 <---------ARR14(2)                              --------->ICU4       ----------->TGA1<------MYB83    --------->ARR14(2)                         <----------ID1  <------MYB83 <----------ID1       --------->ANAC46   -------      <---------ANAC46  <---------ZAT18 <---------AtMYB61        <---------------------WRI1 <--------   gaaacgttgcgacgagaaatcaccagagcgccaagattaaggaaggtggacgagtgacgacgaagaagtcggtataaacgaagcgggtcgggttttacac  16481200                                                                               --------->TOE2(3)                                                                              ----------->GT1                                                                          --------->At4g35610                                   --------->YAB1                        --------->RAP2.6(2)                                  <---------ATHB12                     <---------At4g35610 ------->CBF                  ------------>CBF                         --------->At4g35610       ---- ---------ATHB12        <---------ANAC58        <---------AHL20(2)  --------->SPL7               ---- -->ANAC46              <---------ANAC58        --------->AHL20(2)  ---------->DOF2    <---------YAB1 ---GT1               <-----------GT1        <----------DOF2        <-------TEIL<---------MYB52(1)   caataaccaagtatccatgttgttttacttggtccaatcgtaatgggcttttaatttgggctaaaaccggtacagcagcaacgttatttatcagagagca  16481300                                                <---------AHL20(2)                                             --------->AHL20(1)                                           <---------TOE2(3)                                          --------->YAB1                                          --------->AHL20(2)                                        <---------YAB1                                     <---------AHL20(2)                                     --------->AHL20(2)           --------->ARR11(3)     <---------ARR11(3)           --------->ARR14(2)     --------->AHL20(1)           <---------ARR14(2)     <---------AHL20(1)           <---------ARR11(3)     --------->ARR11(3)       <---------------AGL15           <---------GLK1(2)      --------->AHL20(2)       ==========================================         ----------->ARR10        <---------AHL20(2)    --------->AHL20(2)     <---------ANAC58          --------->AHL20(2)       <---------AHL20(2)                      <----     <---------ANAC58         <---------YAB1 <---------AHL20(1)                      <---------------AtSPL8 ----->GLK1(1)              --------->YAB1<---------AHL20(2)<---------AHL20(2)       --------------->AtSPL8 ----->At4g35610        <-------TEIL <---------YAB1 <---------YAB1----------->GT1    <---------------AtSPL3   tctccattcgtgagatactccatgagtacatcataatatattattaatatttttatgtttaatttaagtagaaaaacttatactaaaattgtacttccat  16481400                  <---------ARR11(3)                                  --------->ZAT6           --------->YAB1                                           --------->ARR11(3)        <---------------AGL15              <---------AHL20(2)       <---------ARR11(3)           ----        --------------->AGL15             --------->AHL20(2)       --------->RVE1(1)             <---    --------->ARR11(3)                --------->AHL20(2)        <---------AHL20(2)               ----    <---------GLK1(2)                 <---------AHL20(2)       --------->AHL20(1)                <---    --------->ARR14(2)       --------->TOE1(3)                 <---------AHL20(2)                ----    <---------ARR14(2)       --------->TOE2(3)                 --------->AHL20(2)               <----    <---------ARR11(3)     <---------YAB1<---------YAB1    <---------AHL20(2)                   <----  ----------->ARR10        <---------TOE2(3)               --------->AHL20(2)                 ------- =======================MADS_MADS<---------TOE2(3)         <---------AHL20(1)        <-----------GT1< -----MYB52(1)    --------->ARR11(3)  <---------YAB1      --------->AHL20(2)     <----------DOF2-----   tagtgagatactcttataagtatctcattaacattaacatattattatatgttttttatattaaatttaatatctctacaatacttttaaacatatcaat  16481500                               --------->AHL20(2)       <-----------GT1 <---------AHL20(2)                   <---------ICU4   <---------YAB1     --------->AHL20(2)                   <---------YAB1 --------->AHL20(2)   <---------AHL20(2)             <---------AHL20(2) <---------AHL20(2)  <---------YAB1               <---------ICU4 ----->AHL20(2)   <---------YAB1                  --------->ATHB51                                  - ------AHL20(2)   --------->AHL20(2)              <--------HAHB4                                    < ----->ATHB51  <---------AHL20(2)              --------->TOE1(3)                                   -- -----HAHB4    --------->AHL20(2)              --------->YAB1      <---------ICU4                ---- ---->ATHB1    --------->AHL20(1)              --------->TOE2(3) <-----------GT1             -------- -----ATHB51   <---------AHL20(1)    <---------YAB1  --------->AHL20(2)                      -------- -----ATHB12  <---------AHL20(2)    <---------AHL20(2)     --------->ICU4                 --------->YAB1 -->WOX13(1)  --------->AHL20(2)  <---------YAB1 --------->ICU4--------->AHL20(2)      --------->YAB1 ---------AHL20(2)<---------AHL20(2)<---------AHL20(1)   --------->YAB1  <----------DOF2 <---------YAB1 ---->ICU4    --------->YAB1   <---------AHL20(2)<---------YAB1<---------AHL20(2)    <---------ARR11(3)   tatttatttttacaaattatattattaaatagttttattatttttaaaaccataattaaacataattaaacattactttacatacaaaatcataataaaa  16481600  Previous    Next  AGI:  At3g45020.1    Description:  50S ribosomal protein-related. similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33746.1); similar to hypothetical protein OsJ_029063 [Oryza sativa (japonica cultivar-group)] (GB:EAZ45580.1); similar to hypothetical protein OsI_031223 [Oryza sativa (indica cultivar-group)] (GB:EAZ09991.1); contains InterPro domain Ribosomal protein L18/L5; (InterPro:IPR005484) Range:  from: 16479946    to: 16481138    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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