Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------ANAC55(2)                                                      --------->At4g35610         ----------->GT1  --------->MYB52(1)                                      <---------At4g35610         --------->ANAC55(2)                       --------->At4g35610      ---------->DOF2 ---->MYC3              --------->MYB46(3)         <---------At4g35610   --------->AtLEC2           < -----MYC3 ----------->HVH21         <---------STY1(2)  --------->ANAC46 ------>ZmHOX2a(1)          -   catgtctgaaaacgtgacaaatttgaacaaacagatgctagatagatttgatcagcatacacaagtatgctcttcctgcaaaggagcttacaacagtttc  16397000                                                   <------MYB46(1)                                                   <------MYB83                                                  --------->MYB55(2)                                                  <---------MYB46(3)                                                <---------ZAT2                                              --------->O2                                              --------->ANAC58                                              --------->ANAC58                                              --------->TGA1a                                             ------>NtERF2                                            <---------ALFIN1                                            --------->DEAR3(1)                                           --------->ATERF1(1)                                           <------NtERF2                                           ----------->HVH21                                          ------>NtERF2                                          <------NtERF2                                          <---------RAP2.6(3)                                          <---------ATERF1(1)                                         --------->DEAR3(1)                                         --------->ATERF1(2)                                         <---------ATERF1(2)                                         <---------ATERF1(1)                                         --------->ANAC58                                         --------->RRTF1(3)                                         --------->RRTF1(2)                         ----------->HVH21<-----------HVH21                         <------NtERF2   --------->RAP2.6(2)                        ------>NtERF2    --------->RAP2.3(3)           --------->HSFC1(2)            --------->RAP2.3(2)                            <---------ANAC58           <---------HSFC1(2)            --------->ANAC58                           <---------ANAC58           --------->HSFB2a(1)          --------->RAP2.3(1)                         <---------ANAC58           <---------HSFB2a(1)          <---------RAP2.6(2)               <-------TEIL  <---------ANAC46    ------>ZmHOX2a(1)  <---------ANAC58 --------->ERF1                  <---------GLK1(2)   --------->TOE2(3)   <---------ANAC58 --------->ATERF1(1)             --------->ARR14(2)       ---- ---------ARR14(2)    <------NtERF2 --------->HSFB2a(2)                 <---------ARR14(2)      <---- -------->ARR14(2)  <---------DEAR3(1) <---------ATERF1(1)            ----------->ARR10 <---------ANAC58   caaatcctcaagaagtttctcgttggcgcgacggttttctgggccgccacggctggtgttccttctgatgttcagattcgactggttcttgctggtttat  16397100        ----------->RAV1(2)        <---------At4g35610        --------->At4g35610        --------->ZAT2        <---------ZAT2   --------->bZIP60(1)       <---------AtLEC2                                                    <---   <---------bZIP60(1)   <----------DOF2                                     <<<<<<<<<<GATA-1    ----   --------->GLK1(1) <-------MYC2                            --------->GLK1(2)                <------   <---------GLK1(1) ------->MYC2              <----------DOF2     ------->TEIL             <-------- ----->ZAT6          ------->MYC3           --------->ARR11(3)     <-------TEIL     ----------->ARR10 -----YAB1           <-------MYC3           <---------ARR11(3) <---------------AtSPL8 <---------ARR14(2)   cactgatatcagctgcttctgcatatgctttacatgaacaagagaagaactttgtgtttagagattatgtacattctgaaatcgagtagatttgttgtgt  16397200                                                                                              -------                                                                                           <---------ZAT18        --------->YAB1                                                                    <---------ANAC58       --------->ICU4                                                                    ------------     --------->YAB1                              <---------ARR14(2)                      <----------- ------ARR14(2)  <---------------AtSPL8         <------ZmHOX2a(1)               <---------MYB52(1) ----->ARR14(2) ---------->DOF2     --------->YAB1        --------->ZAT6      ----------->GT1 ------- ---ANAC46<---------YAB1         --------->WOX13(1) <----------DOF2         <---------At5g28300 -ANAC46<---------ICU4       ----------->GT1--------->LBD16                <-----------GT1<---------ANAC58   atatgtataatcatcatacaaagtacaaacattgtaaatcaaaatccagaggaacttttagcactataaaaccgatttaaccgttaaattttgggtactc  16397300                                                     <--------ZAP1                                                 <---------ANAC55(2)                                                <---------LBD16                                               <-----------GT1                                            <--------HAHB4                                            --------->ATHB51                                            <---------ICU4                                            --------->YAB1     <----------DOF2                       --------->ICU4                               --------->ZAT14     <---------DAG2                        --------->AHL20(2)                     <-----------TGA1 -->ANAC58                               --------->YAB1            --------->TOE2(2)    <---------ZAT14 --->AtSPL8                         ----------->GT1 ----------->GT1--------->TOE1(2)  --------->O2 ----AtSPL8                        --------->DAG2<---------ANAC46 --------->YAB1  <-----------HVH21-- -->ANAC58     <----------DOF2    ---------->DOF2--------->ANAC55(2)            <-------TEIL       --   aattgaactttataaaacttttaagtaagaaaacagaaaagtagaataattacggggtcaaattcgaaacataagaaaaacattcgtcacttcacttgag  16397400              <---------RAP2.6(3)         --------->DAG2        ---------->DOF2     --------->ANAC58                      --------->ZAT18     --------->ANAC46                      <---------ZAT18                                 <---------     --------->ANAC58                      --------->ZAT14                                <---------ANAC58  --------->ZAT18                   --------->REM1(1)                                     <---------ANAC58 ------->ANAC58                <---------ICU4                                  <----------DOF2 ------->ANAC58    *TSS     <---------ICU4 <---------ZAT14    <----------DOF2--------->At4g35610-----   caagcacacgaaaagccgataagaagataacaattactacaactgtgcgctcttgttatctctgctttgaagtgaaatcagctttggctatggcttcttc  16397500                                    <-----------HVH21                                       <-------TEIL                                   <------MYB46(1)     <---------DEAR3(2)                <---------HSFB2a(1)                                   <------MYB83        <---------ORA47(2)                --------->HSFC1(2)                                   <---------MYB46(3)  <---------MYB46(3)     --------->ARR14(2)                                 <--------P           <---------DREB2C(2)     <---------ARR14(2)   <----------DOF2       ------>ZmHOX2a(1)            <---------DEAR3(1)      <-----------ARR10 <---------ZAT2     --------->GLK1(1)         <----------DOF2                 --------->GLK1(2) --------->At4g35610<---------At4g35610     --------->At4g35610              --------->RVE1(1) <---------At4g35610<---------GLK1(1)       --------->ZAT2               ---------->DOF2 <---------HSFC1(2) -DOF2 ---------->ID1   <---------ALFIN1    <---------At4g35610      --------->TOE1(3)  <---------TOE1(2) ------>HVH21       --------->At4g35610 <---------ALFIN1<------NtERF2--------->TOE2(3)  <---------TOE1(3)   gacagctttgtctctctcatggagctcctctccttgttggtcacacagcttcaatggcggtgcaaatgaaaccctaaaagtatctgagcgaaggttcaat  16397600                                          ---------->DOF2                             --------->HSFC1(2)                             <---------HSFB2a(1)                                               ------                  ---------->DOF2     ----------->GT1          --------->GLK1(1)             <-------             --------->LBD16 <---------HSFC1(2)<---------ICU4  <---------GLK1(1)       <----------DOF2            <---------HSFB2a(2)      --------->ANAC58  <-----------HVH21              <---------ANAC58            --------->HSFB2a(2)      --------->ANAC58 <----------DOF2                 <---------ANAC58           <---------LBD16   --------->HSFB2a(1)  <-----------GT1                    ---------->ID1   tttgaagttgtttcccagaagaaagctaagaaacttcgcaaggtaaaagtcattacctttcatgggtttccttcaaaaatttgatttggcttttagttag  16397700          <---------ANAC58          <---------ANAC58               ---------->DOF2                        ----------->GT1  --------->ATHB12                   --------->At4g35610                        <---------ZAT6 --->MYB52(2)                        <---------At4g35610     ----------->GT1  <---------ANAC46 --MYB52(1)                   <---------AtMYB61---------->DOF2      <---------AHL20(2)         <-----   tttttgatttgagcttgtgtttctgaagaattttggtggagatgaaagtaaaagacttgaagatgcttaatttatgggtttagtgtaaaaacatcgtctt  16397800                                                     ------>NtERF2                                                    --------->ANAC58                        ---------->DOF2             --------->ANAC46                    <------ZmHOX2a(1)        --------->DAG2                  --------->MYB59     --------->TOE2(3) <----------DOF2            --------->ZAT14       --------->YAB1    --------->ANAC58  --------->ZAT14      --------->AHL20(2) -----DOF2--------->At4g35610   ------->TEIL---------->DOF2    <-----------GT1         ----------->GT1   tgttcttgtatcagcgtagttaggaagaaagatgaatcaacattagaaaagtagacgcctttatattaccagtttagtttcaagtagtgaagataaattg  16397900  Previous    Next  AGI:  At3g44880.1    Description:  ACD1 (ACCELERATED CELL DEATH 1). Identical to Pheophorbide a oxygenase, chloroplast precursor (PAO) [Arabidopsis Thaliana] (GB:Q9FYC2;GB:O04422); similar to ACD1-LIKE, electron carrier [Arabidopsis thaliana] (TAIR:AT4G25650.1); similar to pheophorbide A oxygenase 2 [Nicotiana tabacum] (GB:ABY19385.1); similar to chloroplast pheophorbide a oxygenase PaO1 [Brassica napus] (GB:ABD60317.1); similar to chloroplast pheophorbide a oxygenase PaO2 [Brassica napus] (GB:ABD60316.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains InterPro domain Pheophorbide a oxygenase (InterPro:IPR013626) Range:  from: 16394580    to: 16397297    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g44890.1    Description:  RPL9 (ribosomal protein L9); structural constituent of ribosome. Identical to 50S ribosomal protein L9, chloroplast precursor (RPL9) [Arabidopsis Thaliana] (GB:P25864); similar to unknown [Populus trichocarpa] (GB:ABK96065.1); contains InterPro domain Ribosomal protein L9; (InterPro:IPR000244); contains InterPro domain Ribosomal protein L9 N-terminal-like (InterPro:IPR009027) Range:  from: 16397419    to: 16399451    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version