Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------AHL20(2)        <---------ICU4                                                                     <---------ANAC58       <---------ATHB12                                                    ----------->HVH21 <-------     --------->YAB1                               --------->DAG2     ---------->DOF2       <---------ANAC58 <---------YAB1             <---------YAB1      ---------->DOF2<------ZmHOX2a(2) <----------DOF2   attatactaataaatccatactaacatgttatgtttttggctgtctgttcaaaagggtctaatagatcaacaaaagcttgacacttttaagttgcctatc  16394200                                                                                --------->ANAC46                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                             <---------REM1(2)                                                                         <---------YAB1                                                                        --------->AHL20(1)                                                                        --------->AHL20(2)                                                    <---------YAB1    --------->AHL20(1)                                                  <-----------GT1     <---------ARR11(3)           <-                                         <---------ANAC46             --------->ARR11(3)          <--                                       --------->MYB52(1) <---------TOE2(3) <-----------GT1   <------ --------->ANAC46                   <------ZmHOX2a(1)--------->ATHB12 <---------AHL20(1)      ------- --CCA1(2)                  <---------ATHB12 --------->ALFIN1         --------->ICU4          -------   tatgctccacaagcggatgaattgaagcaaatcatcgaggataacgggtgtttcacgattgaggtattcgaaaatattatacacgccaagggagagtatc  16394300                                              <---------ARR14(2)                                              --------->ARR14(2)                                             <------ZmHOX2a(1)                                         <------MYB46(1)                                        <---------MYB46(3)                                        --------->MYB55(2)        --------->LBD16                <--------P       --------->LBD16        <---------TOE2(3) --------MYB52(1)         <----------DOF2<------MYB83 ---------HVH21    ------->GAMYB      <-------GAMYB       <-----------------AG ---ARR14(2)      --------->ZAT6  ------------>AtMYB77    <-----------------AGL1               <----- -->ARR14(2)    <-----------GT1 <-----------HVH21    --------->At4g35610                --------->TOE2(3) -->GLK1(2)    <-----------GT1<---------TOE1(3)<------ZmHOX2a(2)               ----------->GT1 <-----   cgttagaccccgagtttttaacagtctcctttaaggtcacggttggaggatcagtagcttcactatttgggcaagatggtatggagaaaacctttgagct  16394400                                                     --------->ANAC58                                                --------->LBD16                                                --------->ANAC46                                                --------->ANAC58                                                --------->ANAC58                                                --------->ANAC55(1)                                         ----------------->AGL1                                       --------->ANAC58                           ------>ZmHOX2a(1)   <---------LBD16                                ------>ZmHOX2a(2)               --------->ANAC46        --------->ANAC58                                     <-------- ---------->DOF2          --------->TOE2(3) <---------ALFIN1 --------->TOE2(3)              --------- ----ANAC58    --------->ANAC58      ---------->DOF2 --------->ANAC58                   --------->YAB1 ----ANAC58    --------->ANAC58 --------->GLK1(1)--------->LBD16               --------->GLK1(2)   tgtgaaagagaagacacaagaaatgcttcctcagatagccaaagccaaacccggaatgcaatacctcattgtgcttcgaagaaactgttttcatgatcta  16394500     <----------DOF2    ------>ZmHOX2a(2)                   <---------ANAC46   <------ZmHOX2a(2)                  --------->YAB1  --------->ARR11(3)                 --------->ICU4                             <---------AHL20(2)  <---------ARR11(3)             ------------>CBF                               *TSS          <------  <---------AGP1              <------------CBF    <---------ANAC58              --------->AHL20(2)  --------->AGP1            <---------AHL20(2)    <---------ANAC58           <---------YAB1   <------ <---------CCA1(2)       <---------TOE2(3)        <---------ANAC46<------------CBF            <------ -ARR11(3)             <---------AHL20(2) <---------ANAC46  <-----------RAV1(1)<---------AHL20(2) >ARR11(3)         --------->AHL20(2)<---------ATHB12    ------->TEIL   <---------MYB46(3) <---------   tttagatctttgaaacgagacttaaataatgtaattgcaatgatgtgtgtttgtgtgtgtatgtgttgtattgtttgttattttaaatagtctctttcgt  16394600                                                           ----------->GT1                                                          ------->MYC4                                                          <-------MYC2                                                          <-------PIF5                                                          ------->PIF5                                                          <-------MYC4                                                          ------->MYC2                                                          <-------MYC3                                                          ------->MYC3                                                         --------->ANAC55(2)                                                         <---------O2                                                         --------->O2                                <---------ARR14(2)       --------->TGA1a                                <---------ICU4           <---------TGA1a                           --   ------->TEIL                 --------->ARR14(2)     <---------ALFIN1                          ---- ---ANAC46                  <-------TEIL             ------>ZmHOX2a(1)                          <---- ---ANAC58     <---------ANAC55(2)               --------->ARR14(2)                          -------- ---ANAC58     --------->ANAC55(2)               <---------ARR11(3)                          -------- -DOF2        <-------TEIL--------->TOE2(3)      <---------ARR14(2)   <---------MYB52(1)     --------   ttatgtatatcacaaatacatatcacaacgttcatatttgcaatgtgccaaaatcctccacgtgttaaatccatttgttcatagtttctcgttacaagac  16394700        <---------YAB1    ----------->GT1                                                         <---------ANAC46 ------->MYB46(3)  --------->LBD16                                          <---------ANAC58 ------->RAV1(1)   ----------->GT1                  <<<<<<<<<TBF1           <---------ANAC58       -- ------ID1        --------->ANAC46     --------->ANAC55(1)                <---------TOE1(2)    ------ ->ANAC46         --------->ANAC58     --------->ANAC58               <---------HSFB2a(2)   <-------- ->ANAC58         --------->ANAC58     --------->ANAC58   <<<<<<<<<TBF1  <---------CCA1(2)  --------- ->ANAC58        <---------LBD16       --------->ANAC46<<<<<<<<<TBF1  --------->HSFB2a(2)<-------TEIL   aacaaatggtatcaatgtccacggaaaaattgcatacttgcacgcaatctcttcttcttcttcttcgttcttctcgtagcttgaaataagattcatcaga  16394800                                                                                   --------->ARR14(2)                                                                                   <---------ARR14(2)                                 ----------->GT1                                  ------>MYB46(1)                             ------>MYB83                                         ------>MYB83                             ------>MYB46(1)                                 --------->YAB1                      <---------MYB52(2)                                    --------->MYB46(3)          --------->TOE2(3)<---------MYB59                                --------->WOX13(1)     --------->AHL20(2)------->GAMYB                                      --------->YAB1 --------->GT1        --------->MYB46(3)                                 --------->MYB46(3) --->At4g35610        <---------MYB111(2)                              ----------->RAV1(1)         -- -At4g35610           <---------MYB55(2)            <-----------GT1 --------->HSFB2a(2)            <- >At4g35610         ----------->RAV1(1)  <-----------HVH21          <---------HSFB2a(2)        ------   agagtaaataaacatcaaaatccaacaaaccaaactagaaaaatgtcagtagttttactctcttctacttctgcaacaatcaccaaatcccaatccaaaa  16394900                                                                                                    -                                                                                                   --                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                            <------NtERF2                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                                           <---------DEAR4(2)                                                                                           ------>NtERF2                                                                                           <---------RAP2.6(1)                                                                                           <---------RRTF1(1)                                                                                           <---------ATERF1(1)                                                                                           <---------ERF1                                                                                           <---------ORA47(2)                                                                                          <---------RAP2.6(2)                                                                                          --------->ATERF1(2)                                                                                          <---------RAP2.3(2)                                                                                          <---------RAP2.3(3)                                                                                          <---------DREB2C(2)                                                                                          <---------ATERF1(2)                                                                                          <---------DEAR3(1)                                                                                          <---------ANAC58                                                                                          <---------ANAC46                                                                                          <---------ANAC58                                                                                         <------NtERF2                                                                                         <---------ABI4(1)                                                                                        <---------ATERF1(1)                                                                                       --------->ALFIN1                                                                                       ----------->HVH21                                                                                      <-------MYC3---                                                                                      <-----------HVH21                                                                                      ------->MYC3---                              --------------->AGL15                                  <---------O2----                              <---------------AGL15                                  <---------ANAC58                             ----------------->AGL3                            ======================                             ----------------->AGL1                       <---------ALFIN1<---------RRTF1(2)                   ----------->RAV1(1)                                   <---------ALFIN1--------->ATERF1(1)                --------->ANAC46                                         --------->MYB46(3)<---------RAP2.3(1)         <-----------GT1     <-----------------AGL1                    --------->ANAC46<---------DEAR3(1)     <---------DAG2--------->AtMYB61                                   --------->HSFB2a(2)<---------RRTF1(3)     <----------DOF2         <-----------------AGL2               <----------DOF2    <---------ANAC58 ------->ARR14(2) --------->MYB46(3)  --------->ARR11(3)          <---------DAG2   <---------ANAC46-- --------GLK1(2)<---------ALFIN1      <---------ARR11(3)   <------ZmHOX2a(2)   <----------DOF2------- ---->DOF2     --------->MYB46(3) ---------->DOF2         <---------ARR11(3)   <---------DAG2--------   agattccctttttatctcccaccacaaaattcccattaaaggtctcaatttctccatcaagatcgaaacttttccacaaccctttacgcgtggcggcgcc  16395000   <---------DEAR3(2) ----->NtERF2 ------->DEAR3(1) ----NtERF2 ------>DEAR4(2) ------>RAP2.3(1) -->NtERF2 ------ATERF1(1) ---->RAP2.3(3) ---->RRTF1(2) ---->RRTF1(3) ---->RAP2.3(2) -----DEAR3(1) ---->DEAR3(1) ----ABI4(2) --->RAP2.3(1) --->ORA47(2) --->ATERF1(1) -NtERF2 --->DEAR3(2) --->ERF1 --->DEAR4(2) --->RRTF1(1) --->RAP2.6(1) ---ORA47(2) ---ERF1--------->MYB46(3) ---RAP2.3(1) ---RRTF1(1) ---DEAR4(2) ---ATERF1(1) ---RAP2.6(1) --DEAR3(1) ->RAP2.3(2)                                                    <------ZmHOX2a(1) --RAP2.3(2)                                          <---------ANAC46 >ORA47(2)                                            <---------DEAR3(1) >RAP2.3(1)                                          <---------------------WRI1 >ERF1------->TEIL                          >>>>>>>>>TBF1     <---------TOE2(3) >ATERF1(1)      --------->ARR14(2)    ================================HOX2a_HOX2a -ABI4(2)<---------ALFIN1              ------>ZmHOX2a(2)      --------->ANAC58 >RAP2.6(1)--------->TGA1a  ==================HOX2a_HOX2a     --------->ANAC58 >DEAR4(2)------>MYB46(1)   <------ZmHOX2a(1)        <---------LBD16 >RRTF1(1)------>MYB83<---------LBD16 =================================HOX2a_HOX2a ------>ORA47(2) <---------GLK1(2)    <------ZmHOX2a(2)     --------->CCA1(2)                    ---- ------>ATERF1(1)<---------ARR14(2)  --------->ARR14(2)  ----------->ARR10                      ===== ----->ABI4(1)   <XXXXXXXXXXXXXXXXXXXXXMIR4221  --------->ARR14(2)                              <---- ====================bZIP_DOF ---------->DOF2   <---------ARR14(2)                              <---- ------->RAP2.3(3)  ----------->HVH21<---------ARR14(2)--------->LBD16   --------->HSFC1(2)    ------ -->ABI4(2)--------->O2     =================HOX2a_HOX2a<------NtERF2    <---------HSFC1(2)    <----- ->DEAR3(1)==============================bZIP_DOF  --------->ANAC46 >>>>>>>>>TBF1       --------->ALFIN1   gccgtctgtacccacttcggattcgacggaggagaagcggatcgaagaagaatacggcggagataaggaagaagaagggtctgagtttaagtggagagat  16395100  Previous    Next  AGI:  At3g44870.1    Description:  S-adenosyl-L-methionine:carboxyl methyltransferase family protein. similar to FAMT (FARNESOIC ACID CARBOXYL-O-METHYLTRANSFERASE), S-adenosylmethionine-dependent methyltransferase/ farnesoic acid O-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G44860.1); similar to defense-related protein [Brassica carinata] (GB:AAK50345.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299) Range:  from: 16393204    to: 16394590    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g44880.1    Description:  ACD1 (ACCELERATED CELL DEATH 1). Identical to Pheophorbide a oxygenase, chloroplast precursor (PAO) [Arabidopsis Thaliana] (GB:Q9FYC2;GB:O04422); similar to ACD1-LIKE, electron carrier [Arabidopsis thaliana] (TAIR:AT4G25650.1); similar to pheophorbide A oxygenase 2 [Nicotiana tabacum] (GB:ABY19385.1); similar to chloroplast pheophorbide a oxygenase PaO1 [Brassica napus] (GB:ABD60317.1); similar to chloroplast pheophorbide a oxygenase PaO2 [Brassica napus] (GB:ABD60316.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains InterPro domain Pheophorbide a oxygenase (InterPro:IPR013626) Range:  from: 16394580    to: 16397297    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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