Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           ------>ZmHOX2a(2)                                                                        --------->CCA1(2)                                                                        <------ZmHOX2a(2)                                                                        --------->ARR14(1)                                                                       --------->ARR11(3)                                                                       --------->AGP1             ----------->GT1                                           <---------ARR14(2)             --------->LBD16                                           --------->ARR14(2)           <---------LBD16       <---------MYB52(2)                    <---------ARR11(3)   --------->LBD16            <----------ID1                     --------->CCA1(2)      --------->YAB1 -------->MYB52(1)         ------------------------>ANAC81     --------->YAB1          <---------YAB1 ------->MYB52(1)         ---------->DOF2                     <---------YAB1       <---------WOX13(1) ----->MYB46(3)     ---------->DOF2                           <---------ATHB12  <---------YAB1 ------   caaaccggacttagccggtaaacaaagaaaaagaaacaaaccaatacaaaatcggaagataacaatgatacaagatccgattttgatttatgaaaacaaa  16353900                                                                                    --------->MYB46(2)                                                                                    --------->MYB59                                                                           <---------LBD16                                                                           --------->At4g35610                                                                          --------->MYB52(1)                                                                      <---------TOE2(3)                               <----------DOF2                  --------------->AGL15                       ---------->DOF2                          <----------DOF2     ----------->GT1               ------>ZmHOX2a(1)       ---------->DOF2        ---------->ID1     ------------>MYB.PH3(2)         <---------ANAC58  <---------GLK1(2)                 <-----------GT1<---------ANAC46 --------         <---------ANAC58  <---------ARR11(3)     <----------DOF2    ---------->DOF2--------->MYB52(2) ---->DOF2<----------DOF2  --------->ARR11(3)     <---------DAG2<---------------AGL15    <---------YAB1   agaagattgtagctttcctctctctaaaagatactttagaagaaagagaaaactttttttttttttctttttaaagtagcggaagttagttaatattgta  16354000                                          <---------At4g35610                                          --------->At4g35610                                       <---------ANAC58                                       <---------ANAC58             --------->YAB1        <------------CBF                             <---------YAB1           <---------ZAT14         <---------GLK1(2)--------->GLK1(2)        <---------AHL20(2)           --------->ZAT14 ------>ZmHOX2a(2)   --------->ANAC58        --------->AHL20(2)   --------->AHL20(2)    --------->ARR11(3)    --------->ANAC58    --------->ZAT6  <---------REM1(1) --->GT1 <---------YAB1  <---------ARR11(3) ----------->TGA1  --------->YAB1--------->AHL20(2)<------   gaaaaaaaaatactatagtgattttgtgatctctatagattgtttgctgacgaaattctacagataataacacttaaattttatgatgtagttttttttc  16354100                                                     --------->AHL20(2)                                          ---------->DOF2                                      --------->TOE2(3)      ----------------->AGL1                                      ----------->RAV1(1)  <----------ID1                    <-----------GT1   ------->GAMYB<<<<<<<<<MYB98        --------->TOE2(3)            --------->MYB46(3)   --------->MYB59                    --------        --------->YAB1              -------->P   ----------->GT1                  <---------ATERF1(1)     --------->WOX13(1)            --------->WOX13(1)<---------AHL20(2)           <------NtERF2  <--- -----GT1     <---------AHL20(2) <---------ATHB12<---------YAB1     ----------->GT1          --------   attttgtcaaccatattttttttaactatttccaaatcaaccacaaaagttatgttaaattaggccaaaatggtaaaatcgggccgaagcctataaccaa  16354200                            <---------TOE1(3)                            <---------TOE2(3)                                  ------>ZmHOX2a(2)    -                          <<<<<<<<<WRKY18                                  --------->WRKY38(1)      -    <---------ANAC46     --------->WRKY18(1)                             <-------GAMYB              -  --------->ZAT14    ---------->DOF2                                    <---------ANAC58          <-- ---->CBF        --------->ANAC58                                       <---------ANAC46     -------- ------ATHB12    --------->ANAC58      --------->MYB52(1) <---------TOE2(3)--------->WRKY12 <-------- ->MYB46(3)   ----------->HVH21 <-------TEIL      ----------->HVH21     <---------ANAC58  <----------DOF2   taagtgaagtagacgagcgacgcaaaagtcaaggttcgacataacagtgccagtgacagtgaggttatagggtttcgttgatcgtcttcaagctttgata  16354300            --------------->AGL15 <------MYB46(1)                                                                        --------->ARR11(3) <------MYB83------------>CBF                    <---------GLK1(2)                      <---------ARR11(3) -------->MYB59                                  <---------ICU4                <---------AHL20(2) -------->MYB111(1) <---------ANAC58           <---------TOE2(3)              --------->AHL20(2) -------->MYB46(2)  <---------ANAC46   <---------ANAC46               --------------->AtSPL8       <- -------MYB52(1)    <---------ANAC58   <---------ANAC58     <----------DOF2 --------->TOE2(3)      -- ->YAB1     <---------------AGL15      <---------ANAC58    <---------ICU4 <-------TEIL  <---------AHL20(1) -YAB1      =========================================================================================   gttaggttgtcttacttcaatggggtatgagaaattcacttgggtgattaagaatttctcatctttgcaatctgagtacattaaatctgatatattcgtg  16354400             ----------->GT1       <------NtERF2      <---------------AGL15      --------------->AGL15     <-----------------AGL2     <-----------------AGL1                                               --------->KAN4(2)    <------NtERF2                                 <---------ANAC58       --------->HSFC1(2)    --------->At4g35610                       <----------DOF2            <---------HSFC1(2)   <---------ATERF1(1)                       <---------DAG2              <---------HSFB2a(1)   ------>NtERF2                           ------>NtERF2                 --------->HSFB2a(1)   --------->MYB55(2)                   <---------ANAC58                 <---------KAN4(1)   --------->ABI4(2)                    <------MYB46(1)                  --------->KAN4(1)   <---------MYB46(3)                   <------MYB83                    <---------KAN4(2)  <---------DEAR3(1)                    <---------ANAC58     <---------TOE2(3) --------DEAR3(1)                      <-----------RAV1(1)   <---------TOE1(3)                     <- ---->ZmHOX2a(2)              ----------->GT1<----------DOF2 --------->MYB59  >>>>>>>>>>>>>>>>>LFY -- =====================MADS_MADS    <---------YAB1 <---------ANAC58 ---------->DOF2     <---------AHL20(2)   atcggtggctgcaaatggtaagaagaagacaactgttatatttggtgccttttcgttcaattttaggttgaaagaacattctccattgttttaatggttt  16354500           <---------At4g35610                                                   --------->TOE2(3)           --------->At4g35610                                   --------->ARR14(2)         <-----------RAV1(2)                                     ------->TEIL ------>ZmHOX2a(1)<-----     <---------ANAC58     <---------ARR14(2)                     <---------ARR14(2)            <-----     <---------ANAC58     --------->ARR14(2)                    <---------CCA1(2)<----------DOF2 --------AHL20(2)     ---------->ID1                      ---------->ID1 <------MYB83          <----- ------->AHL20(2)<----------DOF2                    <---------AHL20(2)   <------MYB46(1)  <----------DOF2   tttaaatgcttgcaggtgtcttttggcctatcccaatggaaaacagaatgctagttatttgtctctgtatctggatggtcctactttaaaaactttgcct  16354600                                   ----------->GT1                     --------->ALFIN1                                <-----------RAV1(1)                   <------ZmHOX2a(1)   <---------REM1(1)         --------->MYB52(1)                 ------>NtERF2                     --- ----ANAC46         --------->ARR11(3)                         --------->LBD16            <----------DOF2 ----ANAC58         <---------ARR11(3) --------->WOX13(1)      ----------->HVH21      <---------TOE2(3) ----ANAC58  <-------TEIL  <---------MYB46(2)      --------->LBD16  --------->ALFIN1  <---------TOE1(3)   tgtggatgtagaaggcgcataagatttcgcctaactgttgtaaatcaactctccgaaaacctctcccgacgaggaggtgagttctattaaggcttttgga  16354700        <-------TEIL     --------->HSFC1(2)                       <----------DOF2     <---------HSFB2a(1)               <---------MYB52(1)                                        ----     <---------HSFC1(2)          --------->bZIP60(1)                                   <---------HSFC1(2)     --------->HSFB2a(1)         <---------bZIP60(1)    <---------ETT(2)               --------->HSFC1(2)   ---------->DOF2               --------->REM1(1)      --------->ETT(2)            ---------->DOF2 ------->DOF2   <---------YAB1  <-------TEIL---------->ID1                <---------MYB46(3) ------>ZmHOX2a(1)   caaaggaaagttcgtattttgtttgtgtttgagttacatcagttttgtctttttatggtctacagaaggaaaacgatggtttgataaaaagcttcctctg  16354800  Previous    Next  AGI:  At3g44798.1    Description:  other RNA Range:  from: 16353282    to: 16354001    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g44800.1    Description:  meprin and TRAF homology domain-containing protein / MATH domain-containing protein. similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G44790.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 16354320    to: 16357014    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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