Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     <---------ANAC46                                                                                   <---------ANAC58                                                                                   <---------ANAC58                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                              <------MYB83                               --------->HSFB2a(2)                            <---------MYB46(3)                               <---------HSFB2a(2)                        --------->ATHB12                         <-----------RAV1(1)                      --------->MYB46(3)     <---------TOE2(3)--------->GLK1(2)                           <---------MYB52(2)     <---------YAB1   --------->ARR14(2)                     <----------DOF2  <------MYB46(1) <----------DOF2      <---------ARR14(2)      <---------------AGL15      <---------YAB1 ------>GLK1(2)      ------>MYB46(1)          --------------->AGL15 --------->MYB52(1) ------GLK1(2)       ------>MYB83    <------ZmHOX2a(1)    <---------MYB52(1) <---------AtMYB61 <-----   aatctttatggtagtctttcaccaaatctgttgctagaaggacgttttctattagtagccggtctttaacaaacgacgattggttgcctgcgataaactg  16222800                                          --------->TOE1(3)          <----------DOF2   <---------GLK1(2)                     --------->CCA1(2)     ---------->DOF2        --------->ARR11(3)                 --------->ANAC58  --------->At4g35610       <---------ARR11(3)       <---------ANAC58  <------NtERF2           <---------TOE2(3)          <---------ANAC58         --------->GLK1(2)  <---------At4g35610     ----------->ARR10          <---------ANAC55(2) <---------ETT(2) <----------DOF2 ------RAV1(1)        --------->At4g35610 --------->TOE2(3)    --------->ANAC58       <---------CCA1(2)   tggcagcaaaagctttaatctattagctaagattttggagataaccttatacattacgttgcagcacgatataggtcgataatctttcatctctttggac  16222900                                                           --------->ANAC58           --------->AHL20(1)                          <---------MYB46(3)               --------->ANAC58           <---------AHL20(1)                        >>>>>>>>>ARR1              <---------GLK1(1)                  --------->AHL20(2)                        >>>>>>>>>ARR2              --------->GLK1(1)                 --------->AHL20(2)                        >>>>>>>>>ARR1             --------->ARR14(2)                 <---------AHL20(2)                        >>>>>>>>>ARR2             <---------ARR14(2) <------ZmHOX2a(1)<---------AHL20(2)                  <---------ZAT2          <---------MYB52(1)  ---------->DOF2      --------->YAB1<---  <---------GLK1(2)    <------ZmHOX2a(1) <----------DOF2 ---------->DOF2     ----------->GT1  <------ZmHOX2a(1)   tccagtttcttagggatgagagctaggattgttgagttaacacctttaggcagaaaccccaaagcaaagaaggattgaattgctaaaataaattcaggac  16223000                               --------->O2                               <---------O2                               <---------TGA1a                                                    ---                   ---------->DOF2                                                                <--                   ======================bZIP_DOF           --------->ATHB12                      ---                 ------>ZmHOX2a(1)      <-----------HVH21   <---------ICU4               <-----------GT1          ----------->HVH21    --------->TGA1a              <--------HAHB4              <-----------GT1  <---------ARR11(3)           <---------ANAC46             --------->YAB1         <----------DOF2<--  --------->ARR11(3)    <---------GLK1(1)      <---------ANAC46                <------ZmHOX2a(1)  --- ------MYB59    --------->TOE2(3)     --------->MYB46(3)   <---------YAB1  ---------->DOF2     <-----   ctaaaatctcccatgactccttaaagaattcagacgtgaaaccatcagggcctggagatttatcattaggcatagagaaaaggaccttttttatctcttc  16223100                                                     --------->DEAR3(2)                                               --------->DAG2                                          --------->At4g35610         <---------LBD16               <---------ZAT14       <---------REM1(2)               --------->ABI4(2) ------>ZAT2    --------->ANAC58       --------->ZAT14 -------ZAT2    --------->ANAC58      --------->ALFIN1 -------->RAV1(2)               <---------ARR14(2)   --------->MYB46(3)                         <---- -------At4g35610               --------->ARR14(2) *TSS               <---------ZAT14    --------->GLK1(2) ------>At4g35610     <---------MYB46(3)  <---------At4g35610     <-----------GT1    --------->YAB1 ----At4g35610<--------P     ------>ZmHOX2a(2)---------->DOF2<----------DOF2   <---------ALFIN1 <----   tgctgagacaacacgggtaagcatttgttgatcggtttcggtgcagcgaaaaggaacagaccgcttattttctccactgaaacaccttcataatctgtag  16223200                                                            ----------->RAV1(2)                                                          <---------ANAC58                                                       --------->GLK1(2)                                                      --------->ARR14(2)                                                 <---------ANAC46                                                 --------->ALFIN1                                       ------>ZmHOX2a(1)  <---------ANAC58                                     <---------ANAC58 <---------GLK1(1)                        --------->ANAC58       --------->ALFIN1                                   ---                        <---------ANAC55(2)   --------->ALFIN1     --------->ANAC58         <--------                        --------->ANAC46  <-----------RAV1(2) ----------->HVH21             <--------                        --------->ANAC58<-----------HVH21 <---------ANAC46                  ---------            <---------GLK1(1)        <---------ANAC58 <---------ARR14(2)                    ---------     <---------REM1(1)  --------->ANAC55(2)>>>>>>>GRF7--------->GLK1(1)   <-----------------------TaNAC69(2) --MYB83  <------ZmHOX2a(1)     <---------ANAC58--------->ATERF1(1)--------->ANAC46     <-----------HVH21 --MYB46(1) --------->GLK1(1)   <---------ANAC58--------->ALFIN1   --------->ANAC58--------->GLK1(2)   gtatgagttgtaggaactctctaaatacgaaatagcatgtcctgtcaggggggggggattccgtctgacacgcagagacatagagaagctcgtcagctcg  16223300                                                                                       <---------ZAT2                                                                                      ------->TEIL                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                             <-----------HVH21    ---                                                                        ------>ZmHOX2a(2)         ---                                                                       <------ZmHOX2a(2)       ------ ------>SPL7                                    <---------WRKY18(1)   <---------ARR14(2)       <----- -At4g35610            ----------->RAV1(2)  <---------At4g35610       --------->ARR14(2)       ------ -ZAT2                 <---------ANAC58     <---------ZAT2           --------->At4g35610       <----- >ZAT2                 <---------ANAC58     --------->At4g35610      <---------At4g35610   <--------- >At4g35610       ------>ZmHOX2a(1)     <-----------HVH21        <-----------HVH21 --------->ANAC46   tccgtctcaagaagctcgtcctctcgcctgcctcaagaagctcgtcagcttgtccgttcaagtagctcgtcagatcgcccgtctcacgaagctcgtcagc  16223400             <---------ZAT2            ------->TEIL   <-----------HVH21    --------->TOE1(1)              --------->YAB1 ------>ANAC58          --------->TOE2(1)         --------->ANAC58                           <------- ------>ANAC58   <-----------HVH21                --------->ANAC58                          --------- --->At4g35610  --------->ANAC58               <---------ZAT2                            --------->YAB1 ----At4g35610  --------->ANAC58               --------->ZAT2                           <---------YAB1 --->ZAT2--------->ANAC58                      --------->At4g35610           <---------AHL20(2) ----ZAT2--------->ANAC46    ------>ZmHOX2a(1) <---------At4g35610           --------->AHL20(2) --HVH21 --------->ANAC58 ---------->ID1   <-----------HVH21     ---------->ID1        --------->AHL20(2)   tcgcccgtctcacgaagctcgtcacctcgtccttctcaagaagctcgtcagctcgaaacataattttgtcattttcttataaatttcaatattataaaat  16223500                                                                                                  <--                                                                                                <----                                                                                               ------                                                                             --------->AHL20(1)<-----                                                >>>>>>>>>ARR2                <---------AHL20(2)------                                    --------->ATHB12           <---------ARR11(3)              <-----                                    <---------ICU4             --------->ARR11(3)           ---------                                   <---------YAB1 ----------->GT1            <---------AHL20(1)<-----                                   --------->ICU4<---------WOX13(1)          --------->ARR11(3)------         --------->AHL20(2)      --------->YAB1--------->ATHB12<---------GLK1(2)      <---------ANAC55(2)         <---------AHL20(2)     <-------TEIL  <---------YAB1 <---------TOE2(3)        --------->ANAC55(2) --AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------TOE1(3)        <---------ANAC46 >AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------YAB1  ------>ZmHOX2a(1)    <--------   ttgaaacttaaaaaaatacaatatcgacccaaaattcatcattgaattttgattgttatatttaagatttttcctgtaatatatcgtctcgtattaatat  16223600       <---------AHL20(2)      --------->AHL20(1)      <---------AHL20(1)   --------->AHL20(2) -------AHL20(2)           <---------ANAC58 -----AHL20(2)             <---------ANAC46 --->AHL20(1)       <---------AHL20(2) ----AHL20(1)       --------->AHL20(2)                    --------->TOE2(3)           ---------->DOF2 --->AHL20(2)   --------->ICU4                  --------->ICU4                       <---------AHL20(2) ----AHL20(2)  <---------AHL20(1)         --------->AHL20(2)                     <---------AHL20(2) >AHL20(2)     <---------AHL20(2)         <---------AHL20(2)                     --------->AHL20(2) ----ARR11(3) --------->YAB1 ----------->GT1 <---------YAB1                  <---------YAB1 --->ARR11(3)<---------YAB1<---------ANAC58  <---------AHL20(2)            --------->YAB1          <- -AHL20(2) --------->YAB1--------->ARR11(3)--------->YAB1----------->GT1   --------->AHL20(2)     ---   attttttatatatttataatatttaaatttcttgtaaaattcaatttataatttttaaaacgttataagttttaaaattataaatatttaaagcattttt  16223700  Previous    Next  AGI:  At3g44650.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 5.1e-43 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus) Range:  from: 16220836    to: 16223151    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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