Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->GLK1(2)------>MYB46(1)                                          --------->ARR11(3)                                          --------->ARR14(2)     ----------->GT1      --------->ARR11(3)                  <---------ARR14(2)   <---------MYB52(1) -------->HSFB2a(2)                       <---------ARR11(3) ------->GAMYB -----ANAC58  ------>ZmHOX2a(2)          <---------ARR14(1)------>MYB83 --------->DAG2 -----ANAC58 <---------GLK1(1)        --------->ZAT6       -------->P  ---------->DOF2 ---YAB1    <---------ARR11(3)      <-----------GT1       --------->MYB52(1)                     <---   ttgtagaataacttgatctctgaaatgtgtccattgtataacagtatcttgagttttggccaaccgtgagtaaaaaagtagccaaaatttcttcgacgca  16219600                                                                                                  <--                                                                                                <----                                                                                                <----                                                                                         --------->GLK1(1)                                                                                         ---------->DOF2                                                                                        <---------ARR14(2)         ------->TEIL                                                                   --------->ARR14(2)        <---------CCA1(2)                                                              <------NtERF2    <---------ANAC58                                                                 <---------ANAC46    <---------ANAC46                                                                <---------LBD16    <---------ANAC58      --------->ZAT14                <---------ALFIN1--------->ANAC46<---------GLK1(1) ------CCA1(2)            <---------ZAT14           <---------YAB1      --------->SPL7--------->LBD16   tatatatcgtgtatctcttagccatgtcttcactcttacaacatcacagagtttatgaaacacttctggttccatacgatataactggcggaaatgcgca  16219700                                   ------>MYB46(1)                                   ------>MYB83                                 <---------MYB59                                --------->ANAC58                                --------->ANAC46                                --------->ANAC58                              <-----------GT1                            --------->YAB1                        <------ZmHOX2a(2)    --------->ZAT6          <---------ICU4              <---------ARR14(2)  --------->MYB52(1)       <---------YAB1          ------>ZmHOX2a(2)  <-----------GT1        --------->YAB1           --------->DEAR3(2)               <---------MYB46(3) ----ZmHOX2a(1)         <---------YAB1            <------ZmHOX2a(2)                <-----------RAV1(1) -----TOE1(2)           <---------AHL20(2)       <---------ARR14(2)     ---------->DOF2            -- -----TOE2(2)           --------->AHL20(2)       --------->ARR14(2)    --------->YAB1             <--   ggattaactgtaagagcagtttggatataattatacccaactcttgagacggatcgacgaactggacgatcaataaaagtactcgttgttgcattttcca  16219800                                                <-----------GT1            <-----------TGA1                  --------->ARR14(2)         --------->AHL20(2)            <-----------HVH21                  <---------ARR14(2)   <----------DOF2<-----------HVH21   --------->ANAC46 ------->YAB1     --------->GLK1(2)  <---------At4g35610        --------->ARR11(3) -------ATHB12    <-----------ARR10  --------->At4g35610        <---------ARR11(3)   ataacaaaacatgatgtccaaatctgactcaccatcttctgcttcaattttttctctgtcatttaagttctcttcttcgtcaccaatgttctccatgtta  16219900                                                     <---------AHL20(2)                                                 <---------CCA1(1)     ------->TEIL                                                 <---------RVE1(1)     --------->SPL7                                                --------->ARR11(3)  <---------ANAC55(2)                               <-------TEIL     <---------ARR11(3)  --------->ANAC58                   ----------->GT1              --------->AHL20(1)  --------->ANAC55(2)               <---------AHL20(2)               <---------AHL20(1)  --------->ANAC46              <---------AHL20(2)              ----------->ARR10     --------->ANAC58              <---------ARR11(3)       <---------ANAC55(2)         --------------->AtSPL8              --------->AHL20(2)       --------->ANAC58            --------------->AtSPL3              --------->ARR11(3)       --------->ANAC46     <-------TEIL             <---------REM1(1)              --------->AHL20(1)       --------->ANAC55(2)  ------->TEIL    --------->YAB1              <---------AHL20(1)       --------->ANAC58 <---------------AtSPL8       --------->ANAC46   aacaccttcaaaagaatatatttgttaaatatgttcatagcacgtagtaagatattaatatgtacatagcacgtaccatcatattagacgtagcacatag  16220000                 --------->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(s)   <---------YAB1       <---------TOE2(3)     --------->ANAC58               --------->ICU4      ----------->GT1      ---------->DOF2        --------->ANAC58            ---------->DOF2     ------>MYB83    <------- --------->ARR11(3)     <----------ID1               ---------->DOF2         ------>MYB46(1) -------- <---------ARR11(3) --------->AHL20(2)       *TSS---------->DOF2    --------->YAB1         ----------   catgatattaaagaagacatcataaaatgacaagtctcgagccatcttaaaaaaagaaagaaagtattattcataaaccaaatagaaaaaccaaaaagaa  16220100                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                      ----------->HVH21                                              <---------------AGL15                 --------->At4g35610                                           <---------YAB1                           <---------At4g35610                                        --------->ICU4                             --------->GLK1(2)                                    <---------YAB1                                 <---------ARR14(2)                                  -------->HAHB4                                   --------->ARR14(2)                                  <---------ICU4                               <---------ANAC55(2)                                  --------->YAB1                               --------->ANAC46                                 --------->ICU4                                --------->ANAC58                                 <---------ATHB12   --------->DAG2             --------->ANAC58                                 <---------YAB1   ---------->DOF2              --------->ANAC55(2) ---ID1                      <---------ZAT14--------->YAB1       ---------->DOF2  <---------GLK1(2) --->GT1                    <---------ZAT6 ----------->GT1  ----------->GT1    --------->ANAC55(1) >DOF2                    ----------->GT1--------->YAB1  --------->MYB52(1)   <---------LBD16   aaactaaaacaaaaaaccatgaaacaaatagtgtaatgatgaatgatgataaaaaaggcaaacagataaaagtattgtatcacggaatctgacatattct  16220200                            <---------YAB1                         <---------AHL20(2)                    <---------ANAC46                         <---------YAB1           --------->AHL20(2)                      --------->AHL20(1)          <---------ICU4         --------->MYB52(2)                      <---------ARR11(3)         <---------AHL20(2)   <----------DOF2 --------->GLK1(2)    --------->ARR11(3)         --------->AHL20(2)<---------YAB1 -ARR14(2)         <------ZmHOX2a(1)         <---------AHL20(2)<---------ANAC58             --------- >ARR14(2)       <---------TOE1(3)           --------->AHL20(2)<---------ANAC58            --------->AHL20(2) -GLK1(2)        <---------TOE2(3)         <----------DOF2<---------MYB52(1)               <---------AHL20(2)   cacaatctttctcattcttaaggatatattattgtagagcatgctctttaaataatttcagtttggcttatgctttagttgctcaatctctatttaaaga  16220300                                          <---------HSFB2a(1)                                          <---------KAN4(1)                                          --------->KAN4(1)                                       ---                                          --------->HSFB2a(1)                                     <--                                          --------->HSFC1(2)                          <---------At4g35610                              <---------AHL20(1)                                      --------->At4g35610                              --------->AHL20(2)                   ------>ZmHOX2a(2)  <---------ZAT2                              <---------AHL20(2)             <---------ANAC58      <---------ANAC58                             --------->AHL20(2)         <---------DAG2  <-----------GT1   <---------GLK1(2)                     <---------TOE2(3)    <---------HSFC1(2) --------->TOE2(3)<---------DAG2    -----                     <---------TOE1(3)   <---------KAN4(2)   <---------ANAC58 <----------DOF2   <---- ->DOF2      <----------DOF2 <---------AHL20(2)<----------DOF2   <---------ARR11(3)<---------ANAC58<-   gcatgctctgttcttctttatttcaggtttattaaatttagagaacgttcttttcaaacctttccttgatctcattaccacttttgctagctgattctga  16220400        --------->AHL20(2)                                                                          <        --------->YAB1                                                           --------->AtMYB61  -   <---------ANAC46                 <---------ANAC58                            --------->ANAC58 ---- --->ZmHOX2a(2)              <---------AHL20(2)                                 --------->ANAC58<---- -------ICU4                --------->AHL20(2)                         <---------ANAC58       ------- ---->ARR11(3)       --------->AHL20(2)                                <---------ANAC58       <------ -----ARR11(3)   ----------->GT1    <---------ANAC58                  <---------TOE2(3)----------->GT1 ---------DOF2   <---------ANAC46   <---------ANAC46     ---------->DOF2   ----------->HVH21 --------   tctttgcgaataatatgcaacgtataaatataaaatttgcgtcgagttttcagaaatagcaaaggaagcatttacgtttgacacctaaactgaaaattaa  16220500  Previous    Next  AGI:  At3g44640.1    Description:  transposable element gene. transposase IS4 family protein, contains Pfam profile: PF01609 transposase DDE domain Range:  from: 16218527    to: 16220045    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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