Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ------>MYB46(1)                                                                  <         --------->ANAC58                                                                   <--------         <---------YAB1                            --------->ANAC46                      <---------AHL20(1)         --------->ANAC58                          --------->ANAC58                      <---------ARR11(3)         --------->ANAC46    <---------REM1(1)     --------->ANAC58                    <---------ARR11(3)   ----------->HVH21      --------->ALFIN1         ------->GAMYB                       --------->AHL20(1) --------->At4g35610     ------->MYC3            <---------ALFIN1                      <---------AHL20(1) <---------At4g35610     <-------MYC3       <----------ID1               --------->ALFIN1--------->AHL20(1) -HSFB2a(2)        ------>MYB83           --------->CCA1(2)   ------->MYC3         --------->TOE2(3)< >HSFB2a(2)      <---------MYB59       <---------TOE2(3)      <-------MYC3----------->GT1--------->ARR11(3)   ttgagatgaccacgatagaccgaaccatgtgttgaagggttgagataggccaaacgccaaaccatgtgttcgaatgtggtgataaccaaaatattttttt  16126300                                                                --------->At4g35610                                                             --------->ZAT2                                                             <---------ZAT2                                                             --------->At4g35610                                                         --------->ZAT2            --------->ALFIN1                                                         <---------STY1(2)   --------->ZAT18                                                         --------->STY1(2) <-------PIF4                                                         <---------ZAT2    <-------MYC3                                                       ------>NtERF2       ------->PIF4                               <-----------RAV1(1)    <---------ANAC58     ------->MYC3                           ----------->HVH21          <---------ANAC58     ------->MYC2         <---------YAB1  <---------At4g35610         --------->ATERF1(1)   ------->MYC4   <---------ANAC46      --------->At4g35610         <------NtERF2         ------->PIF5 -----------RAV1(1)    <-----------RAV1(2)--------->MYB46(3) <---------At4g35610 <-----------RAV1(1) -AHL20(2)             ====================RAV  <-----------RAV1(1)        <-------PIF5   --------->REM1(2) ---------AtMYB61   <------ZmHOX2a(1) <-------TEIL  ------>NtERF2          <-------MYC2<---------ANAC46   ttttggtgggcatgatactcgaggaccagatgactgtgggttcaacaactatggtgccgagctagctgctcgaggcatgtgcaatgtggccgtgaacaag  16126400                             --------->MYB46(3)                           <-----------GT1                         ----------->GT1                        --------->ANAC55(2)                      --------->ARR11(3)                        <---------ANAC55(2)          --------->CCA1(2) --------->MYB59                      --------->CCA1(2)         ----------->GT1<---------YAB1                     <---------ARR11(3)   --------->ANAC58     <---------TOE2(3)                    <    --------->ZAT6   --------->ARR11(3)   --------->ANAC58<----------DOF2    --------->ICU4     <XXXX   ggtttgtcactaaatgacctagagatatgtaaccaatttgaaacaagaaaatgtgatatgcttttaagatagttaagtcattagcaaacatctaacaaca  16126500                                                              ---------->DOF2                                                       --------->GLK1(2)                                                       <-----------ARR10                                                       <---------ARR11(3)          --------->YAB1                               --------->ARR14(2)   <--------P                     <---------WOX13(1)   <---------ARR14(2)               ---------->DOF2  <-------GAMYB                 --------->ATHB12      <---------GLK1(2)         <----------DOF2 ---------TOE2(3)     --------->MYB46(3)           --------->HSFB2a(2)     --------->ARR11(3)       < XXXXXXXXXXXXXXXXMIR869.1      <---------YAB1      <---------HSFB2a(2)     <---------ARR11(3)    ----   ttggggttgcattaataagacttaacaaacattgtgattgaaaaaaacttcatcgagaatcttacaaagaagtcgaagagctcttttctccaaagtccaa  16126600                                                                      ===============================        <---------YAB1                                                ----------------->AG   ----------->GT1                                                   *TSS  <------MYB46(1)                                                 ---------->ARF1  <------MYB83           <---------ATHB12              --------->ANAC58                   --------->TOE2(3) --------P             --------->WOX13(1)              --------->ANAC58        ---------->ID1 ----->DAG2          ------------>CBF                  --------->ANAC46       <-----------HVH21   aggtagggtttttattctcacatatcaatcagttacacaaatacacaaacaaaacacacacaactcttgtcttccaaatttgtcacatttagcctaaaac  16126700                                                                           --------->ICU4                                                                      ----------->GT1                                                                    <------ZmHOX2a(1)                                  <---------TOE2(3)        <---------------AGL15                                  <---------TOE1(3)        <---------MYB59 <---------AHL20(2)                        --------->ANAC58                   --------------->AGL15                        --------->ANAC58                  ----------------->AG                --------->At4g35610                       ----------------->AGL1                <---------At4g35610                      <---------At5g28300    <-----------GT1         ---------->ID1 ----------->GT1                 <-----------GT1    --------->AHL20(2)     <----------DOF2    --------->ANAC46     ---------->DOF2      <---------TOE2(3)--------->TOE2(3) ==========================================================================MADS_MADS   tcttctactttgtctctctgctaaacacgaaaaattagggtttttttaaaagaaaattttaccgaattgaggaagaaaaaattaacctcgaaattgactt  16126800                                                                           <---------ANAC46                                                                           <---------ANAC58                                                                           <---------ANAC58                          <---------ARR14(2) <----------DOF2         <---------ATHB12                          <-----------GT1   <---------ANAC58       --------->WOX13(1)        <---------At5g28300   ------>ZmHOX2a(1)                   <<<<<<<<<WRKY18       <-----------GT1    --------->ARR14(2)<---------ANAC58    --------->TOE2(3)   <<<<<<<<<TBF1      ------>ZmHOX2a(1)   <---------TOE1(2)    <---------ANAC46              <-------   cattcttcttcaccgtttcagttcctagtatccttctctcgtcgtagctttctgggtttttggtttcgtcaatgaattcgtgttttttgcagagtctttg  16126900                                           <---------AHL20(2)                                          <---------AHL20(1)                                          --------->AHL20(2)                                          <---------AHL20(2)                                          --------->YAB1                                    ------>ZmHOX2a(2)                                   --------->At4g35610                                  --------->ARR11(3)                                  <---------ARR11(3)                 <-----------GT1            <---------ANAC58<---------ANAC58              ------->TEIL ---DOF2    <---------ANAC58<---------ANAC58             <---------CCA1(2)   <-----------GT1   actctctgtaacttccttgagcttgttcatgggtgtgatctcaataaaatttcagtcttgaatcttggttttttctgtttttcgatttttagttcgaatt  16127000                      --------->ANAC58                      --------->ANAC58                    ---------->DOF2                 --------->LBD16                                              ------>MYB46(1)                <---------ANAC58                       --------->GLK1(1)      --------->MYB52(1)                <---------ANAC58                       <---------RVE1(1)      ------>MYB83                <---------ANAC46                      --------->ARR14(2)    --------------->AGL15               <---------LBD16                        <---------GLK1(2)     <---------------AGL15             <---------WOX13(1)                       --------->ARR11(3)    <---------MYB59           --------->ATHB12     ----------->GT1       <---------ARR14(2)   ----------------->AGL1          <---------YAB1=====================================================================MADS_MADS          --------->ICU4<-----------------AG          <---------ARR11(3)   ----------------->AG        <---------At4g35610<----------DOF2    ----------->GT1      <---------TOE2(3)              <--   gagagaagagagatgattgcggagaagcccttttgggttaaacatgaagggttacagatattctccattgatgttcaacctaatggagaaaggtttgcta  16127100       ----------->HVH21     <---------MYB46(3)    <---------DEAR3(1)    <---------AtMYB61    --------->ALFIN1   <---------ABI4(1)                              <---------TOE2(3)   <-------GAMYB                                  <---------TOE1(3)                          <------MYB83   <------NtERF2                              <---------DAG2                                 <------MYB46(1)  <---------MYB46(3)               <<<<<<<<<TBF1  <---------YAB1                            <-------- <---------ANAC46             <------------------------ANAC81                               <-------- <---------DREB2C(2)      <-----------GT1     <----------DOF2       <---------ANAC46       <---------WOX13(1) <---------DEAR3(1)   <---------AHL20(2)     <---------ANAC58       <---------ANAC58     --------->ATHB12 ---------RAV1(1)     --------->AHL20(2)     <---------ANAC58       <---------ANAC58    <---------YAB1   ctggcggtggtgaccacaaggtttttaatttctcttcttcttctattgctttatggttcaagatgagtttgcttatgttatgtagttcgtttgattggtg  16127200  Previous    Next  AGI:  At3g44530.1    Description:  HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA); nucleotide binding / protein binding. Identical to Protein HIRA (HIRA) [Arabidopsis Thaliana] (GB:Q9LXN4); similar to FAS2 (FASCIATA 2), nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G64630.2); similar to HIRA [Zea mays] (GB:NP_001105835.1); similar to hypothetical protein OsI_031364 [Oryza sativa (indica cultivar-group)] (GB:EAZ10132.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22304.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain TUP1-like enhancer of split; (InterPro:IPR011494); contains InterPro domain WD40/YVTN repea Range:  from: 16126669    to: 16132471    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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